View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6918_low_14 (Length: 244)

Name: NF6918_low_14
Description: NF6918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6918_low_14
NF6918_low_14
[»] chr4 (10 HSPs)
chr4 (19-230)||(8040925-8041136)
chr4 (19-211)||(8417073-8417255)
chr4 (19-135)||(8411468-8411584)
chr4 (21-105)||(8035636-8035720)
chr4 (23-169)||(43144043-43144189)
chr4 (19-226)||(9138132-9138320)
chr4 (22-226)||(8404441-8404648)
chr4 (160-230)||(8035562-8035632)
chr4 (48-153)||(8418917-8419022)
chr4 (19-66)||(8358836-8358883)
[»] chr2 (2 HSPs)
chr2 (19-226)||(33084614-33084821)
chr2 (19-66)||(24845661-24845708)
[»] chr7 (1 HSPs)
chr7 (22-226)||(5477004-5477211)


Alignment Details
Target: chr4 (Bit Score: 208; Significance: 1e-114; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 19 - 230
Target Start/End: Complemental strand, 8041136 - 8040925
Alignment:
Q  19 caatcttcttaagatggctgcaagtgctggccaatgtaaagattttgagatttgactattctgtcattgaaacaatacaaaaggtaggtgactgttgtgt 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8041136 caatcttcttaagatggctgcaagtgctggccaatgtaaagattttgagatttgactattctgtcattgaaacaatacaaaaggtaggtgactgttgtgt 8041037  T
Q  119 actttgacatctatattttgattacacaaacatttgggtccttgaatatgttaatccgtgtaagtagtctttgaatgtattacaaaaacatatccgaatt 218  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8041036 actttcacatctatattttgattacacaaacatttgggtccttgaatatgttaatccgtgtaagtagtctttgaatgtattacaaaaacatatccgaatt 8040937  T
Q  219 tgtcattttctt 230  Q
    ||||||||||||    
T  8040936 tgtcattttctt 8040925  T

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Target: chr4; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 19 - 211
Target Start/End: Original strand, 8417073 - 8417255
Alignment:
Q  19 caatcttcttaagatggctgcaagtgctggccaatgtaaagattttgagatttgactattctgtcattgaaacaatacaaaaggtaggtgactgttgtgt 118  Q
    |||||||||||||||||||||||||| | ||||||||||||||||||| | ||| || | ||||  ||||||| ||||| || ||| |||| |           
T  8417073 caatcttcttaagatggctgcaagtgtttgccaatgtaaagattttgaaagttggctctgctgttcttgaaacgatacacaatgtaagtgaat------- 8417165  T
Q  119 actttgacatctatattttgattacacaaacatttgggtccttgaatatgttaatccgtgtaagtagtctttgaatgtattacaaaaacatat 211  Q
       || |||| ||||||||| |||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  8417166 ---ttcacatatatattttggttacacaatcatttaggtccttgaatatgttaatcggtgtaagtagtctttgaatgtattacaaaaacatat 8417255  T

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Target: chr4; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 19 - 135
Target Start/End: Original strand, 8411468 - 8411584
Alignment:
Q  19 caatcttcttaagatggctgcaagtgctggccaatgtaaagattttgagatttgactattctgtcattgaaacaatacaaaaggtaggtgactgttgtgt 118  Q
    |||||||| ||||||||||||||||||| ||||||||||||||||||| ||||| |  ||||||| || ||||||||||| ||||| |||||| | ||||    
T  8411468 caatcttcgtaagatggctgcaagtgcttgccaatgtaaagattttgaaatttggcggttctgtccttcaaacaatacaagaggtaagtgactttagtgt 8411567  T
Q  119 actttgacatctatatt 135  Q
    ||||| |||||||||||    
T  8411568 actttcacatctatatt 8411584  T

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Target: chr4; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 21 - 105
Target Start/End: Complemental strand, 8035720 - 8035636
Alignment:
Q  21 atcttcttaagatggctgcaagtgctggccaatgtaaagattttgagatttgactattctgtcattgaaacaatacaaaaggtag 105  Q
    ||||||||||  |||||||||||||| ||||||||||||||||||| ||||| ||||||||||||||| ||||| ||||||||||    
T  8035720 atcttcttaaattggctgcaagtgcttgccaatgtaaagattttgaaatttggctattctgtcattgatacaatccaaaaggtag 8035636  T

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Target: chr4; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 23 - 169
Target Start/End: Complemental strand, 43144189 - 43144043
Alignment:
Q  23 cttcttaagatggctgcaagtgctggccaatgtaaagattttgagatttgactattctgtcattgaaacaatacaaaaggtaggtgactgttgtgtactt 122  Q
    |||||||||||||||||||||||| ||||| ||||||||||||| | |||  |||||| ||||| ||||||||||||| ||| || ||| |  | |||||    
T  43144189 cttcttaagatggctgcaagtgcttgccaacgtaaagattttgaaaattggttattctctcattcaaacaatacaaaatgtaagttactttaatatactt 43144090  T
Q  123 tgacatctatattttgattacacaaacatttgggtccttgaatatgt 169  Q
    | || ||| ||||||||||| ||||  ||||||||| |||| |||||    
T  43144089 tcacctctttattttgattatacaattatttgggtctttgagtatgt 43144043  T

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Target: chr4; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 19 - 226
Target Start/End: Complemental strand, 9138320 - 9138132
Alignment:
Q  19 caatcttcttaagatggctgcaagtgctggccaatgtaaagattttgagatttgactattctgtcattgaaacaatacaaaaggtaggtgactgttgtgt 118  Q
    |||||||||||||||||||||||||||| |||||||| |||||||||  |||||  ||| ||||| |||| | ||||||||| ||| || ||| | ||||    
T  9138320 caatcttcttaagatggctgcaagtgcttgccaatgtcaagattttggaatttggttatgctgtctttgagaaaatacaaaatgtaagtcactttagtgt 9138221  T
Q  119 actttgacatctatattttgattacacaaacatttgggtccttgaatatgttaatccgtgtaagtagtctttgaatgtattacaaaaacatatccgaatt 218  Q
    |||||                   ||||| ||||| ||||||||||||||||  || |||| |||||||||||||||||||||||||||||||| ||| |    
T  9138220 acttt-------------------cacaatcattttggtccttgaatatgttggtcggtgttagtagtctttgaatgtattacaaaaacatatctgaact 9138140  T

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Target: chr4; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 22 - 226
Target Start/End: Original strand, 8404441 - 8404648
Alignment:
Q  22 tcttcttaagatggctgcaagtgctggccaatgtaaagattttgagatttgactattctgtcattgaaacaatacaaaaggtaggtgactgttgtgtact 121  Q
    |||||||||| ||||| |||||||| ||||| ||||||||||||| | |||  || ||||||||| || ||||| |  | ||| || ||| | || ||||    
T  8404441 tcttcttaagttggcttcaagtgcttgccaacgtaaagattttgaaaattggttactctgtcattcaagcaatagactatgtaagtcactttagtatact 8404540  T
Q  122 ttgacatctatattttga-ttacacaaacatttgggtccttgaatatgttaatccgtgtaa--gtagtctttgaatgtattacaaaaacatatccgaatt 218  Q
    || || ||| |||||||| ||| |||| ||| ||||||||| |||||||||  |  ||| |  |||||||||||||||||||||||||||| |  ||||     
T  8404541 ttcacttctttattttgatttaaacaatcatctgggtccttaaatatgttagacgatgtcagcgtagtctttgaatgtattacaaaaacatttatgaatc 8404640  T
Q  219 tgtcattt 226  Q
    ||||||||    
T  8404641 tgtcattt 8404648  T

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Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 160 - 230
Target Start/End: Complemental strand, 8035632 - 8035562
Alignment:
Q  160 ttgaatatgttaatccgtgtaagtagtctttgaatgtattacaaaaacatatccgaatttgtcattttctt 230  Q
    |||||||||||| |  |||| ||||||||||||||||||||| |||||||||| ||| |||||||||||||    
T  8035632 ttgaatatgttagttggtgttagtagtctttgaatgtattacgaaaacatatctgaacttgtcattttctt 8035562  T

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Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 48 - 153
Target Start/End: Original strand, 8418917 - 8419022
Alignment:
Q  48 gccaatgtaaagattttgagatttgactattctgtcattgaaacaatacaaaaggtaggtgactgttgtgtactttgacatctatattttgattacacaa 147  Q
    ||||| ||||||||||||  |||||  |||  | ||||| |||||||| |||| ||| |||||| | ||||||||| |||| ||||||||||||||||||    
T  8418917 gccaacgtaaagattttggaatttggttatggtatcattcaaacaataaaaaatgtaagtgactttagtgtactttcacatatatattttgattacacaa 8419016  T
Q  148 acattt 153  Q
     |||||    
T  8419017 tcattt 8419022  T

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Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 66
Target Start/End: Complemental strand, 8358883 - 8358836
Alignment:
Q  19 caatcttcttaagatggctgcaagtgctggccaatgtaaagattttga 66  Q
    |||||||||||| ||||||||||||||| ||||||||  |||||||||    
T  8358883 caatcttcttaaaatggctgcaagtgcttgccaatgtcgagattttga 8358836  T

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Target: chr2 (Bit Score: 108; Significance: 2e-54; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 19 - 226
Target Start/End: Original strand, 33084614 - 33084821
Alignment:
Q  19 caatcttcttaagatggctgcaagtgctggccaatgtaaagattttgagatttgactattctgtcattgaaacaatacaaaaggtaggtgactgttgtgt 118  Q
    |||||||| |||||||||||||||||||  |||||||||||||||||  |||||  |||||| ||||||| | ||||||||| ||| |||||| | ||||    
T  33084614 caatcttcctaagatggctgcaagtgctttccaatgtaaagattttggaatttggttattctatcattgagaaaatacaaaatgtaagtgactttagtgt 33084713  T
Q  119 actttgacatctatattttgattacacaaacatttgggtccttgaatatgttaatccgtgtaagtagtctttgaatgtattacaaaaacatatccgaatt 218  Q
    |||||  |||||||||||||||||||||| |||||||||| |||||||||||| || |||| ||||||||| || ||||||||||||||||||| ||| |    
T  33084714 actttcgcatctatattttgattacacaatcatttgggtcgttgaatatgttagtcggtgttagtagtcttcgattgtattacaaaaacatatctgaaat 33084813  T
Q  219 tgtcattt 226  Q
    ||||||||    
T  33084814 tgtcattt 33084821  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 66
Target Start/End: Original strand, 24845661 - 24845708
Alignment:
Q  19 caatcttcttaagatggctgcaagtgctggccaatgtaaagattttga 66  Q
    |||||||||||| |||||||||||||||  ||||||| ||||||||||    
T  24845661 caatcttcttaaaatggctgcaagtgctttccaatgtgaagattttga 24845708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 22 - 226
Target Start/End: Original strand, 5477004 - 5477211
Alignment:
Q  22 tcttcttaagatggctgcaagtgctggccaatgtaaagattttgagatttgactattctgtcattgaaacaatacaaaaggtaggtgactgttgtgtact 121  Q
    |||||||||| ||||| |||||||| || || ||||||||||||| | |||  || ||| ||||| || ||||| | || ||| || ||| | || ||||    
T  5477004 tcttcttaagttggcttcaagtgcttgcgaacgtaaagattttgaaaattggttactctatcattcaagcaatagacaatgtaagtcactctagtatact 5477103  T
Q  122 ttgacatctatattttgatt-acacaaacatttgggtccttgaatatgttaatccgtgtaa--gtagtctttgaatgtattacaaaaacatatccgaatt 218  Q
    || || ||| |||||||||| | |||| ||||||||||||| |||||||||  |  || ||  |||||||||||||||||||||||||||| |  ||||     
T  5477104 ttcacttctttattttgattaaaacaatcatttgggtccttaaatatgttagacgatgcaagtgtagtctttgaatgtattacaaaaacatctatgaatc 5477203  T
Q  219 tgtcattt 226  Q
    ||||||||    
T  5477204 tgtcattt 5477211  T

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