View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6918_low_15 (Length: 239)
Name: NF6918_low_15
Description: NF6918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6918_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 183; Significance: 4e-99; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 9162402 - 9162626
Alignment:
| Q |
1 |
atgattagacctgttgactagttttggccaattcattctggttcagcaaggaatatgnnnnnnnnnnnnnnggacagtatctatgtctaactccaatcta |
100 |
Q |
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| T |
9162402 |
atgattagacctgttgactagttttggccaattcattctggttcagcaaggaatatgtttttcttttttttggacagtatctatgtctaactccaatcta |
9162501 |
T |
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| Q |
101 |
tagttgaaacggtctagtctggttttcaaaattggctacaaatcagcaaatcatggttaaaagtatttttaaatgttatgtattaatacatgaccacctc |
200 |
Q |
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| T |
9162502 |
tagttgaaacggtctagtctggttttcaaaattggctacaaatcagcaaatcatggttaaaagtatttttaaatgttatgtattaatacatgaccacctc |
9162601 |
T |
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| Q |
201 |
aggctaaggattcgtatatccaatt |
225 |
Q |
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| T |
9162602 |
aggctaaggattcgtatatccaatt |
9162626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 147 - 208
Target Start/End: Original strand, 9149875 - 9149936
Alignment:
| Q |
147 |
caaatcatggttaaaagtatttttaaatgttatgtattaatacatgaccacctcaggctaag |
208 |
Q |
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| T |
9149875 |
caaatcatgagtaaaactatttttaaatgttacatattaatacatgactgcctcgggctaag |
9149936 |
T |
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