View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6918_low_3 (Length: 780)

Name: NF6918_low_3
Description: NF6918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6918_low_3
NF6918_low_3
[»] chr6 (17 HSPs)
chr6 (366-687)||(5385571-5385891)
chr6 (18-238)||(5385230-5385450)
chr6 (675-765)||(5392199-5392289)
chr6 (546-677)||(31979668-31979799)
chr6 (546-677)||(31936732-31936862)
chr6 (561-677)||(31076746-31076863)
chr6 (556-642)||(24435817-24435903)
chr6 (567-677)||(21801152-21801265)
chr6 (580-677)||(5017306-5017404)
chr6 (556-642)||(18233012-18233097)
chr6 (546-642)||(14521828-14521925)
chr6 (589-677)||(22709208-22709297)
chr6 (590-677)||(31086284-31086372)
chr6 (715-748)||(5332860-5332893)
chr6 (573-630)||(10077026-10077083)
chr6 (589-642)||(22963897-22963950)
chr6 (589-642)||(23824443-23824496)
[»] scaffold0294 (1 HSPs)
scaffold0294 (20-215)||(6995-7194)
[»] chr5 (14 HSPs)
chr5 (546-677)||(24553337-24553469)
chr5 (546-680)||(28832412-28832547)
chr5 (546-677)||(31300405-31300537)
chr5 (561-677)||(10281922-10282041)
chr5 (561-677)||(11181642-11181759)
chr5 (561-677)||(17003769-17003886)
chr5 (546-621)||(42127277-42127352)
chr5 (561-620)||(2630401-2630460)
chr5 (561-677)||(19588915-19589032)
chr5 (590-677)||(42127180-42127268)
chr5 (567-677)||(11916782-11916892)
chr5 (590-673)||(9353146-9353230)
chr5 (590-677)||(14520429-14520517)
chr5 (590-677)||(15464733-15464821)
[»] chr7 (18 HSPs)
chr7 (546-677)||(20284244-20284376)
chr7 (552-677)||(23402823-23402949)
chr7 (546-677)||(2580545-2580676)
chr7 (546-677)||(9184984-9185116)
chr7 (546-677)||(9189816-9189949)
chr7 (552-677)||(5817080-5817206)
chr7 (556-642)||(49091828-49091914)
chr7 (561-677)||(4796478-4796595)
chr7 (546-677)||(2647507-2647639)
chr7 (567-677)||(33332260-33332371)
chr7 (567-642)||(35960993-35961068)
chr7 (567-677)||(46516115-46516226)
chr7 (561-642)||(29159975-29160056)
chr7 (556-621)||(56114-56179)
chr7 (561-642)||(9235428-9235509)
chr7 (590-677)||(2479535-2479623)
chr7 (594-641)||(18408967-18409014)
chr7 (567-676)||(21989085-21989194)
[»] chr3 (24 HSPs)
chr3 (561-677)||(1417290-1417407)
chr3 (556-677)||(1736103-1736225)
chr3 (561-677)||(40592581-40592698)
chr3 (556-677)||(21711388-21711509)
chr3 (561-642)||(3715837-3715918)
chr3 (546-677)||(3323490-3323622)
chr3 (546-678)||(8126785-8126918)
chr3 (561-677)||(36029264-36029380)
chr3 (546-677)||(40844805-40844942)
chr3 (561-677)||(47649740-47649859)
chr3 (556-676)||(47923704-47923825)
chr3 (556-677)||(48438381-48438502)
chr3 (546-642)||(18552720-18552816)
chr3 (546-677)||(24694965-24695097)
chr3 (590-677)||(33386474-33386562)
chr3 (608-677)||(4386776-4386846)
chr3 (561-677)||(35925649-35925765)
chr3 (546-642)||(25795935-25796031)
chr3 (590-677)||(27986255-27986343)
chr3 (561-677)||(8370288-8370404)
chr3 (562-677)||(3328156-3328272)
chr3 (590-677)||(16264548-16264636)
chr3 (590-677)||(26928398-26928486)
chr3 (580-677)||(26299177-26299275)
[»] chr2 (18 HSPs)
chr2 (546-677)||(31056198-31056332)
chr2 (556-677)||(21630110-21630232)
chr2 (556-677)||(33528434-33528556)
chr2 (561-669)||(10707070-10707179)
chr2 (561-677)||(34389021-34389138)
chr2 (546-677)||(14698819-14698951)
chr2 (556-677)||(17865370-17865492)
chr2 (567-677)||(33118311-33118422)
chr2 (580-677)||(10445277-10445375)
chr2 (561-673)||(13569499-13569612)
chr2 (546-677)||(2869502-2869634)
chr2 (590-677)||(36757572-36757660)
chr2 (580-642)||(8040253-8040315)
chr2 (556-677)||(39483098-39483220)
chr2 (546-620)||(40015080-40015154)
chr2 (546-677)||(15903700-15903832)
chr2 (590-677)||(40739033-40739121)
chr2 (561-677)||(8389959-8390076)
[»] chr1 (17 HSPs)
chr1 (552-677)||(47102649-47102775)
chr1 (546-677)||(40816624-40816758)
chr1 (556-677)||(29651978-29652100)
chr1 (561-677)||(13598570-13598687)
chr1 (573-677)||(47098635-47098740)
chr1 (556-642)||(16124360-16124446)
chr1 (567-677)||(27104212-27104322)
chr1 (585-677)||(9022716-9022809)
chr1 (567-677)||(9476438-9476549)
chr1 (567-677)||(19073104-19073217)
chr1 (567-677)||(19120994-19121107)
chr1 (573-673)||(22819613-22819714)
chr1 (590-677)||(3281906-3281994)
chr1 (590-677)||(26644708-26644796)
chr1 (546-677)||(32889595-32889725)
chr1 (561-677)||(47703743-47703862)
chr1 (590-677)||(13604432-13604520)
[»] chr8 (13 HSPs)
chr8 (546-642)||(7493019-7493115)
chr8 (561-677)||(4696418-4696535)
chr8 (546-677)||(19752204-19752335)
chr8 (567-677)||(26403037-26403150)
chr8 (556-677)||(6127388-6127512)
chr8 (573-677)||(5702290-5702395)
chr8 (573-677)||(23799386-23799491)
chr8 (590-677)||(4456227-4456315)
chr8 (590-677)||(7412539-7412627)
chr8 (552-677)||(3051281-3051407)
chr8 (561-677)||(5990373-5990488)
chr8 (585-641)||(9054267-9054323)
chr8 (573-642)||(28307744-28307813)
[»] chr4 (14 HSPs)
chr4 (556-677)||(5269010-5269132)
chr4 (573-677)||(25861843-25861948)
chr4 (561-676)||(5112407-5112523)
chr4 (561-677)||(3777719-3777836)
chr4 (561-642)||(24333981-24334062)
chr4 (561-641)||(3793927-3794007)
chr4 (556-677)||(10047546-10047668)
chr4 (552-677)||(42599384-42599510)
chr4 (573-677)||(16623103-16623207)
chr4 (573-677)||(16628682-16628786)
chr4 (575-677)||(5396481-5396583)
chr4 (552-642)||(39774151-39774241)
chr4 (556-676)||(6743226-6743346)
chr4 (580-621)||(54867371-54867412)
[»] scaffold0006 (3 HSPs)
scaffold0006 (561-677)||(5855-5972)
scaffold0006 (573-642)||(2676-2745)
scaffold0006 (590-677)||(133089-133177)
[»] scaffold0148 (1 HSPs)
scaffold0148 (585-677)||(10925-11020)
[»] scaffold0087 (1 HSPs)
scaffold0087 (590-677)||(43771-43859)
[»] scaffold0036 (1 HSPs)
scaffold0036 (589-677)||(85881-85970)
[»] scaffold0140 (1 HSPs)
scaffold0140 (590-677)||(8227-8315)
[»] scaffold0078 (1 HSPs)
scaffold0078 (588-677)||(23729-23819)


Alignment Details
Target: chr6 (Bit Score: 246; Significance: 1e-136; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 366 - 687
Target Start/End: Original strand, 5385571 - 5385891
Alignment:
Q  366 ttaaaatctcacagttacacatatgtttctgctgacaattcnnnnnnnnttatatggaaaaaggatgttgagatataaatgattagtcaatggctgtatc 465  Q
    |||||||||||||| |||||||||||||||| |||||||||        ||||||| ||||| |||||||||| ||||||||||||||||||||||||||    
T  5385571 ttaaaatctcacagctacacatatgtttctgatgacaattcaaaaaaaattatatgaaaaaaagatgttgagaaataaatgattagtcaatggctgtatc 5385670  T
Q  466 tgaacatatcattaaaactgtaggatcaatatttttctaatatcaatggctggataaaatggtcacatagtctaatttctcccactctcttaataaatcc 565  Q
    |||||||||||||||| ||| |||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  5385671 tgaacatatcattaaagctgcaggatcaatatttttctaatatcaatcgctggataaaatgg-cacatagtctaatttctcccactctcttaataaatcc 5385769  T
Q  566 caagaggaaacactaaagaaagctttttgatccttttaatggtgaaatctcactacttaaggtgattgcaatgtttcttagcccaatgaacctcactaca 665  Q
    |||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  5385770 caagaggaaacactaaagaaagcttttttatccttctaatggtgaaatctcactacttaaggtgattgcaatgtttcttaacccaatgaacctcactaca 5385869  T
Q  666 aagacactcaactctttttgta 687  Q
    ||||||||||||||||||||||    
T  5385870 aagacactcaactctttttgta 5385891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 18 - 238
Target Start/End: Original strand, 5385230 - 5385450
Alignment:
Q  18 atcagtactgctttgagtaaataaatgttaggagagaggaacctctgaatttgaaagaaacaatnnnnnnnnttctcatgtaagtaattcttttatatat 117  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||    
T  5385230 atcagtactgctttgagtaaataaatgttaggagtgaggaacctctgaatttgaaagaaacaataaaaaaaattctcatgtaagtaattcttttatatat 5385329  T
Q  118 ttttacctatgatacctcaagagtaactttcttcaaggagctactgttgtaagagaaatatcaatcttcacaaagctcaaaaagaagataagattaaaca 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5385330 ttttacctatgatacctcaagagtaactttcttcaaggagctactgttgtaagagaaatatcaatcttcacaaagctcaaaaagaagataagattaaaca 5385429  T
Q  218 tcttctgatgccctcatttat 238  Q
    ||||||||||||||| |||||    
T  5385430 tcttctgatgccctcgtttat 5385450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 675 - 765
Target Start/End: Original strand, 5392199 - 5392289
Alignment:
Q  675 aactctttttgtatttccaaagggtatgatctactgtaccaagtgatagtatttctttagtggaaattatgatgtccaccaactaccaaca 765  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  5392199 aactctttttgtatttccaaagggtatgatccactgtaccaagtgatagtatttctttagtggaaattatgatatccaccaactaccaaca 5392289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 546 - 677
Target Start/End: Original strand, 31979668 - 31979799
Alignment:
Q  546 cccactctcttaataaatcccaagaggaaacactaaagaaagctttttgatccttttaatggtgaaatctcactacttaaggtgattgcaatgtttctta 645  Q
    ||||| |||| ||| ||||| ||||| |||||| |||| |||||||| |||||||  |||||||||||||||||||  |||||| || |||||||||| |    
T  31979668 cccacactctcaatgaatcctaagagaaaacacaaaaggaagctttt-gatccttccaatggtgaaatctcactacccaaggtgtttacaatgtttctca 31979766  T
Q  646 gccc-aatgaacctcactacaaagacactcaac 677  Q
     ||| || |||||||||||||||||||||||||    
T  31979767 acccaaaagaacctcactacaaagacactcaac 31979799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 546 - 677
Target Start/End: Original strand, 31936732 - 31936862
Alignment:
Q  546 cccactctcttaataaatcccaagaggaaacactaaagaaagctttttgatccttttaatggtgaaatctcactacttaaggtgattgcaatgtttctta 645  Q
    ||||| |||| ||| ||||| ||||| |||||| |||||| ||||||||||||||  |||||||||||||||||||  |||||| || |||||||||  |    
T  31936732 cccacactctcaatgaatcctaagagaaaacac-aaagaa-gctttttgatccttccaatggtgaaatctcactacccaaggtgtttacaatgtttccca 31936829  T
Q  646 gcccaat-gaacctcactacaaagacactcaac 677  Q
     |||||| || ||||||||||||||||||||||    
T  31936830 acccaatagatcctcactacaaagacactcaac 31936862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 561 - 677
Target Start/End: Complemental strand, 31076863 - 31076746
Alignment:
Q  561 aatcccaagaggaaacactaaagaaagctttttgatccttttaatggtgaaatctcactacttaaggtgattgcaatgtttcttagcccaatg-aacctc 659  Q
    ||||| ||||| ||||||||||||||  ||||||||| ||  ||||||||||||||| ||| ||||||| || ||| |||||| | ||||| | ||| ||    
T  31076863 aatcctaagagaaaacactaaagaaatttttttgatcattccaatggtgaaatctcaatacctaaggtgtttacaaagtttctcaacccaaggcaacgtc 31076764  T
Q  660 actacaaagacactcaac 677  Q
    ||||||||||||||||||    
T  31076763 actacaaagacactcaac 31076746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 556 - 642
Target Start/End: Complemental strand, 24435903 - 24435817
Alignment:
Q  556 taataaatcccaagaggaaacactaaagaaagctttttgatccttttaatggtgaaatctcactacttaaggtgattgcaatgtttc 642  Q
    |||| ||||| ||||| |||||| |||| ||||||||||||||||  |||||||||||||||||||  |||||| || |||||||||    
T  24435903 taatgaatcctaagagaaaacacaaaaggaagctttttgatccttccaatggtgaaatctcactacccaaggtgtttacaatgtttc 24435817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 567 - 677
Target Start/End: Complemental strand, 21801265 - 21801152
Alignment:
Q  567 aagaggaaacactaaagaaagctttttgatccttttaatggtgaaatctcactacttaaggtgattgcaatgtttcttagccc---aatgaacctcacta 663  Q
    ||||| |||||| |||| ||||||||||||||||  |||| ||||||||||||||  |||||| || |||||||||  | |||   |  |||||||||||    
T  21801265 aagagaaaacacaaaaggaagctttttgatccttccaatgttgaaatctcactacccaaggtgtttacaatgtttcccaaccctcaagagaacctcacta 21801166  T
Q  664 caaagacactcaac 677  Q
    ||||||||||||||    
T  21801165 caaagacactcaac 21801152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 580 - 677
Target Start/End: Complemental strand, 5017404 - 5017306
Alignment:
Q  580 aaagaaagctttttgatccttttaatggtgaaatctcactacttaaggtgattgcaatgtttcttagcccaa-tgaacctcactacaaagacactcaac 677  Q
    |||| |||||||| |||||||  ||||||||||||||| |||  |||||| || |||||||||  | |||||  || ||||||||||||||||||||||    
T  5017404 aaaggaagcttttcgatccttccaatggtgaaatctcattacccaaggtgtttacaatgtttcccaacccaagagatcctcactacaaagacactcaac 5017306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 556 - 642
Target Start/End: Original strand, 18233012 - 18233097
Alignment:
Q  556 taataaatcccaagaggaaacactaaagaaagctttttgatccttttaatggtgaaatctcactacttaaggtgattgcaatgtttc 642  Q
    |||| ||||| ||||| |||||| |||| |||||||| |||||||  |||||||||||||||||||  |||||| || |||||||||    
T  18233012 taatgaatcctaagagaaaacacaaaaggaagctttt-gatccttccaatggtgaaatctcactacccaaggtgtttacaatgtttc 18233097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 546 - 642
Target Start/End: Original strand, 14521828 - 14521925
Alignment:
Q  546 cccactctcttaataaatcccaagaggaaacactaaagaaagctttttgatccttttaatggtgaaa-tctcactacttaaggtgattgcaatgtttc 642  Q
    ||||| |||| ||||||||| ||||| ||||| ||||| ||| ||||| ||||||  |||||||||| |||||||||  |||||| || |||||||||    
T  14521828 cccacactctcaataaatcctaagagaaaacattaaaggaagattttttatccttccaatggtgaaattctcactacccaaggtgtttacaatgtttc 14521925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 589 - 677
Target Start/End: Original strand, 22709208 - 22709297
Alignment:
Q  589 tttttgatccttttaatggtgaaatctcactacttaaggtgattgcaatgtttcttagcccaa-tgaacctcactacaaagacactcaac 677  Q
    ||||||||||||  ||||||||||||||||||   |||||| || |||||||||  | |||||  || ||||||||||||||||||||||    
T  22709208 tttttgatccttccaatggtgaaatctcactatccaaggtgtttacaatgtttcccaacccaagagatcctcactacaaagacactcaac 22709297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 590 - 677
Target Start/End: Complemental strand, 31086372 - 31086284
Alignment:
Q  590 ttttgatccttttaatggtgaaatctcactacttaaggtgattgcaatgtttcttagcccaa-tgaacctcactacaaagacactcaac 677  Q
    |||||||||||  |||||||||||||||| ||  |||||| || |||||||||| | || ||  || ||||||||||||||||||||||    
T  31086372 ttttgatccttccaatggtgaaatctcacaacccaaggtgtttacaatgtttctcaacctaagagatcctcactacaaagacactcaac 31086284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 715 - 748
Target Start/End: Complemental strand, 5332893 - 5332860
Alignment:
Q  715 aagtgatagtatttctttagtggaaattatgatg 748  Q
    |||||||||||||| |||||||||||||||||||    
T  5332893 aagtgatagtatttgtttagtggaaattatgatg 5332860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 573 - 630
Target Start/End: Complemental strand, 10077083 - 10077026
Alignment:
Q  573 aaacactaaagaaagctttttgatccttttaatggtgaaatctcactacttaaggtga 630  Q
    |||||| |||| ||||||||||||||||  |||||| ||||||||||||  |||||||    
T  10077083 aaacacaaaaggaagctttttgatccttccaatggtcaaatctcactacccaaggtga 10077026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 589 - 642
Target Start/End: Original strand, 22963897 - 22963950
Alignment:
Q  589 tttttgatccttttaatggtgaaatctcactacttaaggtgattgcaatgtttc 642  Q
    ||||||||||||  |||||||||||||||||||  |||||| || |||||||||    
T  22963897 tttttgatccttccaatggtgaaatctcactacccaaggtgtttacaatgtttc 22963950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 589 - 642
Target Start/End: Complemental strand, 23824496 - 23824443
Alignment:
Q  589 tttttgatccttttaatggtgaaatctcactacttaaggtgattgcaatgtttc 642  Q
    ||||||||||||  |||||||||||||||||||  |||||| || |||||||||    
T  23824496 tttttgatccttccaatggtgaaatctcactacccaaggtgtttacaatgtttc 23824443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294 (Bit Score: 127; Significance: 4e-65; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 127; E-Value: 4e-65
Query Start/End: Original strand, 20 - 215
Target Start/End: Complemental strand, 7194 - 6995
Alignment:
Q  20 cagtactgctttgagtaaataaatgttaggagagaggaacctctgaatttgaaagaaacaatnnnnnnnnttctcatgtaa----gtaattcttttatat 115  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||        ||||||||| |    |||||||||||||||    
T  7194 cagtactgctttgagtaaataaatgttaggagagaggaacctttgaatttgaaagaaacaataaaaaaaattctcatgttaattagtaattcttttatat 7095  T
Q  116 atttttacctatgatacctcaagagtaactttcttcaaggagctactgttgtaagagaaatatcaatcttcacaaagctcaaaaagaagataagattaaa 215  Q
    ||||||||||||||||||||||||| |||| |||||||||||||| ||||| |||||||||||||||||||||||||||| || ||||||||||||||||    
T  7094 atttttacctatgatacctcaagagaaactctcttcaaggagctattgttgcaagagaaatatcaatcttcacaaagctccaacagaagataagattaaa 6995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 61; Significance: 9e-26; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 546 - 677
Target Start/End: Complemental strand, 24553469 - 24553337
Alignment:
Q  546 cccactctcttaataaatcccaagaggaaacactaaagaaagctttttgatccttttaatggtgaaatctcactacttaaggtgattgcaatgtttctta 645  Q
    ||||| |||||||| ||| | ||||| |||||| |||| |||||||||||||||| ||||||||||||||||||||  |||||| || |||||||||  |    
T  24553469 cccacactcttaatgaattctaagagaaaacacaaaaggaagctttttgatccttctaatggtgaaatctcactacccaaggtgtttacaatgtttccca 24553370  T
Q  646 gcccaa-tgaacctcactacaaagacactcaac 677  Q
     |||||  |||||||||||||||||||||||||    
T  24553369 acccaagagaacctcactacaaagacactcaac 24553337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 546 - 680
Target Start/End: Original strand, 28832412 - 28832547
Alignment:
Q  546 cccactctcttaataaatcccaagaggaaacactaaagaaagctttttgatccttttaatggtgaaatctcactacttaaggtgattgcaatgtttctta 645  Q
    ||||| |||| ||| ||||| ||||| |||||| |||| ||||||||||||||||  |||||||||||||||||||  |||||| || |||||||||  |    
T  28832412 cccacactctcaatgaatcctaagagaaaacacaaaaggaagctttttgatccttccaatggtgaaatctcactacccaaggtgtttacaatgtttccca 28832511  T
Q  646 gcccaa-tgaacctcactacaaagacactcaactct 680  Q
     |||||  ||||||||||||||||||||||||||||    
T  28832512 acccaagagaacctcactacaaagacactcaactct 28832547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 546 - 677
Target Start/End: Complemental strand, 31300537 - 31300405
Alignment:
Q  546 cccactctcttaataaatcccaagaggaaacactaaagaaagctttttgatccttttaatggtgaaatctcactacttaaggtgattgcaatgtttctta 645  Q
    ||||| |||| ||| ||||| ||||| |||||| |||| |||| |||||||||||  |||||||||||||||||||  |||||| || |||||||||| |    
T  31300537 cccacactctcaatgaatcctaagagaaaacacaaaaggaagccttttgatccttccaatggtgaaatctcactacccaaggtgtttacaatgtttctca 31300438  T
Q  646 gcccaa-tgaacctcactacaaagacactcaac 677  Q
     |||||  |||||||||||||||||||||||||    
T  31300437 acccaagagaacctcactacaaagacactcaac 31300405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 561 - 677
Target Start/End: Original strand, 10281922 - 10282041
Alignment:
Q  561 aatcccaagaggaaacactaaagaaagctttttgatccttttaatggtgaaatctcactacttaaggtgattgcaatgtttcttagccc---aatgaacc 657  Q
    ||||| ||||| |||||| |||||||||||||||||||||  |||||||||||||||||||  |||||| || |||||||||  | |||   |  |||||    
T  10281922 aatcctaagagaaaacacaaaagaaagctttttgatccttccaatggtgaaatctcactacccaaggtgtttacaatgtttcacaaccctcaagagaacc 10282021  T
Q  658 tcactacaaagacactcaac 677  Q
    ||||||||||||||||||||    
T  10282022 tcactacaaagacactcaac 10282041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 561 - 677
Target Start/End: Complemental strand, 11181759 - 11181642
Alignment:
Q  561 aatcccaagaggaaacactaaagaaagctttttgatccttttaatggtgaaatctcactacttaaggtgattgcaatgtttcttagcccaa-tgaacctc 659  Q
    ||||| ||||| |||||| |||| ||||||||||||||||  ||||||||||| |||||||  |||||| || |||||||||  | |||||  |||||||    
T  11181759 aatcctaagagaaaacacaaaaggaagctttttgatccttccaatggtgaaatttcactacccaaggtgtttacaatgtttcccaacccaagagaacctc 11181660  T
Q  660 actacaaagacactcaac 677  Q
    ||||||||||||||||||    
T  11181659 actacaaagacactcaac 11181642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 561 - 677
Target Start/End: Complemental strand, 17003886 - 17003769
Alignment:
Q  561 aatcccaagaggaaacactaaagaaagctttttgatccttttaatggtgaaatctcactacttaaggtgattgcaatgtttcttagcccaa-tgaacctc 659  Q
    ||||| ||||| |||||| |||| ||||||||||||||||  |||||||||||||||||||  |||||| || |||||||||  | |||||  |||||||    
T  17003886 aatcctaagagaaaacacaaaaggaagctttttgatccttccaatggtgaaatctcactacccaaggtgtttacaatgtttccaaacccaagagaacctc 17003787  T
Q  660 actacaaagacactcaac 677  Q
    |||||||||||| |||||    
T  17003786 actacaaagacattcaac 17003769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 546 - 621
Target Start/End: Complemental strand, 42127352 - 42127277
Alignment:
Q  546 cccactctcttaataaatcccaagaggaaacactaaagaaagctttttgatccttttaatggtgaaatctcactac 621  Q
    ||||| |||| ||| ||||| ||||| |||||| |||||||||||||||||||||  |||||||||||||||||||    
T  42127352 cccacactctcaatgaatcctaagagaaaacacaaaagaaagctttttgatccttccaatggtgaaatctcactac 42127277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 561 - 620
Target Start/End: Original strand, 2630401 - 2630460
Alignment:
Q  561 aatcccaagaggaaacactaaagaaagctttttgatccttttaatggtgaaatctcacta 620  Q
    ||||| ||||| ||||||||||| ||||||||||||||||| ||||||||||| ||||||    
T  2630401 aatcctaagagaaaacactaaaggaagctttttgatcctttcaatggtgaaatttcacta 2630460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 561 - 677
Target Start/End: Original strand, 19588915 - 19589032
Alignment:
Q  561 aatcccaagaggaaacactaaagaaagctttttgatccttttaatggtgaaatctcactacttaaggtgattgcaatgtttcttagcccaa-tgaacctc 659  Q
    ||||| ||||| |||||| |||| ||| ||||||||||||  ||||||||||||||||| |  ||| || || |||||||||  | |||||  || ||||    
T  19588915 aatcctaagagaaaacacaaaaggaagatttttgatccttccaatggtgaaatctcactgcccaagatgtttacaatgtttcccaacccaagagatcctc 19589014  T
Q  660 actacaaagacactcaac 677  Q
    ||||||||||||||||||    
T  19589015 actacaaagacactcaac 19589032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 590 - 677
Target Start/End: Complemental strand, 42127268 - 42127180
Alignment:
Q  590 ttttgatccttttaatggtgaaatctcactacttaaggtgattgcaatgtttcttagcccaa-tgaacctcactacaaagacactcaac 677  Q
    |||||||||||  |||||||||||||||||||  ||||||  | |||||||||| | |||||  ||||||||||||||||| |||||||    
T  42127268 ttttgatccttccaatggtgaaatctcactacccaaggtgtatacaatgtttctcaacccaagagaacctcactacaaagatactcaac 42127180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 567 - 677
Target Start/End: Complemental strand, 11916892 - 11916782
Alignment:
Q  567 aagaggaaacactaaagaaagctttttgatccttttaatggtgaaatctcactacttaaggtgattgcaatgtttcttagcccaa-tgaacctcactaca 665  Q
    ||||| |||||| |||| ||| ||||||||||||  |||||||||||||||||||  |||||| || |||||||||  | |||||  || ||||||||||    
T  11916892 aagagaaaacacaaaaggaag-tttttgatccttccaatggtgaaatctcactacccaaggtgtttacaatgtttcccaacccaagagatcctcactaca 11916794  T
Q  666 aagacactcaac 677  Q
    |||| |||||||    
T  11916793 aagaaactcaac 11916782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 590 - 673
Target Start/End: Complemental strand, 9353230 - 9353146
Alignment:
Q  590 ttttgatccttttaatggtgaaatctcactacttaaggtgattgcaatgtttcttagcccaa-tgaacctcactacaaagacact 673  Q
    |||||||||||  |||||||||||||||||||  |||||| || |||||||||  | |||||  || ||||||||||||||||||    
T  9353230 ttttgatccttccaatggtgaaatctcactacccaaggtgtttacaatgtttcccaacccaagagatcctcactacaaagacact 9353146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 590 - 677
Target Start/End: Original strand, 14520429 - 14520517
Alignment:
Q  590 ttttgatccttttaatggtgaaatctcactacttaaggtgattgcaatgtttcttagcccaa-tgaacctcactacaaagacactcaac 677  Q
    |||||||||||  ||||||||||||||||||   |||||| || |||||||||  | |||||  || ||||||||||||||||||||||    
T  14520429 ttttgatccttccaatggtgaaatctcactatccaaggtgtttacaatgtttcccaacccaagagatcctcactacaaagacactcaac 14520517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 590 - 677
Target Start/End: Original strand, 15464733 - 15464821
Alignment:
Q  590 ttttgatccttttaatggtgaaatctcactacttaaggtgattgcaatgtttcttagcccaa-tgaacctcactacaaagacactcaac 677  Q
    |||||||||||  |||||||||||||||||||  |||||| || | |||||||  | |||||  || ||||||||||||||||||||||    
T  15464733 ttttgatccttccaatggtgaaatctcactacccaaggtgtttacgatgtttcccaacccaagagatcctcactacaaagacactcaac 15464821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 2e-23; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 546 - 677
Target Start/End: Original strand, 20284244 - 20284376
Alignment:
Q  546 cccactctcttaataaatcccaagaggaaacactaaagaaagctttttgatccttttaatggtgaaatctcactacttaaggtgattgcaatgtttctta 645  Q
    ||||| |||| ||| ||||| ||||| |||||| |||| ||||||||||||||||  |||||||||||||||||||  |||||| || |||||||||  |    
T  20284244 cccacactctcaatgaatcctaagagaaaacacaaaaggaagctttttgatccttccaatggtgaaatctcactacccaaggtgtttacaatgtttccca 20284343  T
Q  646 gcccaa-tgaacctcactacaaagacactcaac 677  Q
     |||||  |||||||||||||||||||||||||    
T  20284344 acccaagagaacctcactacaaagacactcaac 20284376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 552 - 677
Target Start/End: Complemental strand, 23402949 - 23402823
Alignment:
Q  552 ctcttaataaatcccaagaggaaacactaaagaaagctttttgatccttttaatggtgaaatctcactacttaaggtgattgcaatgtttcttagcccaa 651  Q
    |||| ||| ||||| ||||| |||||| |||| ||||||||||||| ||  |||||||||||||||||||  |||||| || |||||||||  | |||||    
T  23402949 ctctcaatgaatcctaagagaaaacacaaaaggaagctttttgatcattccaatggtgaaatctcactacccaaggtgtttacaatgtttcccaacccaa 23402850  T
Q  652 -tgaacctcactacaaagacactcaac 677  Q
      |||||||||||||||||||||||||    
T  23402849 gagaacctcactacaaagacactcaac 23402823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 546 - 677
Target Start/End: Original strand, 2580545 - 2580676
Alignment:
Q  546 cccactctcttaataaatcccaagaggaaacactaaagaaagctttttgatccttttaatggtgaaatctcactacttaaggtgattgcaatgtttctta 645  Q
    ||||| |||| ||| ||||| ||||| |||||| |||| ||||||||||||||||| |||||||||||||||||||  |||||| || ||||||||   |    
T  2580545 cccacactctcaatgaatcctaagagaaaacacaaaaggaagctttttgatcctttcaatggtgaaatctcactacccaaggtgtttacaatgttttcca 2580644  T
Q  646 gcccaa-tgaacctcactacaaagacactcaac 677  Q
     |||||  ||||||||| |||||||||||||||    
T  2580645 acccaagagaacctcac-acaaagacactcaac 2580676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 546 - 677
Target Start/End: Complemental strand, 9185116 - 9184984
Alignment:
Q  546 cccactctcttaataaatcccaagaggaaacactaaagaaagctttttgatccttttaatggtgaaatctcactacttaaggtgattgcaatgtttctta 645  Q
    ||||| |||||||| ||||| ||||| ||||||  ||| ||||||||||||||||  |||||||||||||||||||  |||||| || |||||||||  |    
T  9185116 cccacactcttaatgaatcctaagagaaaacacacaaggaagctttttgatccttccaatggtgaaatctcactacccaaggtgtttacaatgtttccca 9185017  T
Q  646 gcccaa-tgaacctcactacaaagacactcaac 677  Q
     |||||  |||||| |||||||||| |||||||    
T  9185016 acccaagagaaccttactacaaagatactcaac 9184984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 546 - 677
Target Start/End: Complemental strand, 9189949 - 9189816
Alignment:
Q  546 cccactctcttaataaatcccaagaggaaacactaaagaaagctttttgatccttttaatggtgaaatctcactacttaaggtgattgcaatgtttctta 645  Q
    ||||| |||||||| ||||| ||||| ||||||  ||| ||||||||||||||||  |||||||||||||||||||  |||||| || |||||||||  |    
T  9189949 cccacactcttaatgaatcctaagagaaaacacacaaggaagctttttgatccttccaatggtgaaatctcactacccaaggtgtttacaatgtttccca 9189850  T
Q  646 gcccaa-tgaacctcactacaaag-acactcaac 677  Q
     |||||  |||||| ||||||||| |||||||||    
T  9189849 acccaagagaaccttactacaaagaacactcaac 9189816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 552 - 677
Target Start/End: Complemental strand, 5817206 - 5817080
Alignment:
Q  552 ctcttaataaatcccaagaggaaacactaaagaaagctttttgatccttttaatggtgaaatctcactacttaaggtgattgcaatgtttcttagcccaa 651  Q
    |||| ||| ||||| ||||  |||||| |||| ||||||||||||||||  ||||||||||||||||| |  |||||  || |||||||||  | || ||    
T  5817206 ctctcaatgaatcctaagaaaaaacacaaaaggaagctttttgatccttccaatggtgaaatctcactccccaaggtatttacaatgtttcccaaccaaa 5817107  T
Q  652 t-gaacctcactacaaagacactcaac 677  Q
    | |||||||||||||||||||||||||    
T  5817106 tagaacctcactacaaagacactcaac 5817080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 556 - 642
Target Start/End: Original strand, 49091828 - 49091914
Alignment:
Q  556 taataaatcccaagaggaaacactaaagaaagctttttgatccttttaatggtgaaatctcactacttaaggtgattgcaatgtttc 642  Q
    |||| ||||| ||||| |||||| |||| ||||||||||||||||  |||||||||||||||||||  |||||| || |||||||||    
T  49091828 taatgaatcctaagagaaaacacaaaaggaagctttttgatccttccaatggtgaaatctcactacccaaggtgttttcaatgtttc 49091914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 561 - 677
Target Start/End: Complemental strand, 4796595 - 4796478
Alignment:
Q  561 aatcccaagaggaaacactaaagaaagctttttgatccttttaatggtgaaatctcactacttaaggtgattgcaatgtttcttagcccaa-tgaacctc 659  Q
    ||||| ||||| |||||| |||  ||||||||||||||||  |||||||||||||||||||  |||||| || ||||||||   | |||||  || ||||    
T  4796595 aatcctaagagaaaacacaaaaagaagctttttgatccttccaatggtgaaatctcactacccaaggtgtttacaatgttttccaacccaagagatcctc 4796496  T
Q  660 actacaaagacactcaac 677  Q
    ||||||||||||||||||    
T  4796495 actacaaagacactcaac 4796478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 546 - 677
Target Start/End: Complemental strand, 2647639 - 2647507
Alignment:
Q  546 cccactctcttaataaatcccaagaggaaacactaaagaaagctttttgatccttttaatggtgaaatctcactacttaaggtgattgcaatgtttctta 645  Q
    ||||| |||| ||| ||||| ||||| |||||| |||  ||| ||||||||||||  |||||||||||||||||||  |||||| || | |||||||  |    
T  2647639 cccacactctcaatgaatcctaagagaaaacacaaaatgaagttttttgatccttccaatggtgaaatctcactacccaaggtgcttaccatgtttccca 2647540  T
Q  646 gcccaa-tgaacctcactacaaagacactcaac 677  Q
     |||||  || ||||||||||||||||||||||    
T  2647539 acccaagagatcctcactacaaagacactcaac 2647507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 567 - 677
Target Start/End: Complemental strand, 33332371 - 33332260
Alignment:
Q  567 aagaggaaacactaaagaaagctttttgatccttttaatggtgaaatctcactacttaaggtgattgcaatgtttcttagcccaa-tgaacctcactaca 665  Q
    ||||| |||||| || | ||||||||||||||||  |||||||||||||||||||  ||| || || |||||||||| | |||||  |||||| ||||||    
T  33332371 aagagaaaacacaaagggaagctttttgatccttccaatggtgaaatctcactacccaagatgtttacaatgtttctcaacccaagagaaccttactaca 33332272  T
Q  666 aagacactcaac 677  Q
    || |||||||||    
T  33332271 aaaacactcaac 33332260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 567 - 642
Target Start/End: Original strand, 35960993 - 35961068
Alignment:
Q  567 aagaggaaacactaaagaaagctttttgatccttttaatggtgaaatctcactacttaaggtgattgcaatgtttc 642  Q
    ||||| |||| | |||| ||||||||||||||||  ||||||||||||||||||| ||||||| || |||||||||    
T  35960993 aagagaaaacgcaaaaggaagctttttgatccttccaatggtgaaatctcactacctaaggtgtttacaatgtttc 35961068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 567 - 677
Target Start/End: Complemental strand, 46516226 - 46516115
Alignment:
Q  567 aagaggaaacactaaagaaagctttttgatccttttaatggtgaaatctcactacttaaggtgattgcaatgtttcttagcccaa-tgaacctcactaca 665  Q
    ||||| |||||| |||  ||||||||||||||||  |||||||||||||||||||  |||||| || |||||||||  | | |||  || ||||||||||    
T  46516226 aagagaaaacacaaaatgaagctttttgatccttccaatggtgaaatctcactacccaaggtgtttacaatgtttcccaactcaagagatcctcactaca 46516127  T
Q  666 aagacactcaac 677  Q
    ||||||||||||    
T  46516126 aagacactcaac 46516115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 561 - 642
Target Start/End: Original strand, 29159975 - 29160056
Alignment:
Q  561 aatcccaagaggaaacactaaagaaagctttttgatccttttaatggtgaaatctcactacttaaggtgattgcaatgtttc 642  Q
    ||||| ||||| |||||| |||| ||||||||||||||||  |||| ||||||||||||||  |||||| || |||||||||    
T  29159975 aatcctaagagaaaacacaaaaggaagctttttgatccttccaatgttgaaatctcactacccaaggtgtttacaatgtttc 29160056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 556 - 621
Target Start/End: Original strand, 56114 - 56179
Alignment:
Q  556 taataaatcccaagaggaaacactaaagaaagctttttgatccttttaatggtgaaatctcactac 621  Q
    |||| ||||| ||||| |||||| |||  ||||||||||||||||  |||||||||||||||||||    
T  56114 taatgaatcctaagagaaaacacaaaaagaagctttttgatccttccaatggtgaaatctcactac 56179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 561 - 642
Target Start/End: Complemental strand, 9235509 - 9235428
Alignment:
Q  561 aatcccaagaggaaacactaaagaaagctttttgatccttttaatggtgaaatctcactacttaaggtgattgcaatgtttc 642  Q
    ||||| ||||| |||||| |||| ||||||||||||||||  ||||||||||| ||||||   |||||| || |||||||||    
T  9235509 aatcctaagagaaaacacaaaaggaagctttttgatccttgcaatggtgaaatatcactatccaaggtgtttacaatgtttc 9235428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 590 - 677
Target Start/End: Original strand, 2479535 - 2479623
Alignment:
Q  590 ttttgatccttttaatggtgaaatctcactacttaaggtgattgcaatgtttcttagcccaa-tgaacctcactacaaagacactcaac 677  Q
    |||||||||||  |||||||||||||||||||  |||||| || |||||||||  | |||||  || |||||||| |||||||||||||    
T  2479535 ttttgatccttccaatggtgaaatctcactacccaaggtgtttacaatgtttcccaacccaagagatcctcactataaagacactcaac 2479623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 594 - 641
Target Start/End: Original strand, 18408967 - 18409014
Alignment:
Q  594 gatccttttaatggtgaaatctcactacttaaggtgattgcaatgttt 641  Q
    ||||||||||||||||||||||||||||  |||||| || ||||||||    
T  18408967 gatccttttaatggtgaaatctcactacccaaggtgtttacaatgttt 18409014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 567 - 676
Target Start/End: Original strand, 21989085 - 21989194
Alignment:
Q  567 aagaggaaacactaaagaaagctttttgatccttttaatggtgaaatctcactacttaaggtgattgcaatgtttcttagcccaa-tgaacctcactaca 665  Q
    ||||| ||||| ||||| |||||| | |||||||  |||||| ||||||||||||  |||||| || |||||||||  | |||||  || ||||||||||    
T  21989085 aagagaaaacaataaaggaagcttat-gatccttccaatggtaaaatctcactacccaaggtgtttacaatgtttcccaacccaagagatcctcactaca 21989183  T
Q  666 aagacactcaa 676  Q
    |||||||||||    
T  21989184 aagacactcaa 21989194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 1e-21; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 561 - 677
Target Start/End: Complemental strand, 1417407 - 1417290
Alignment:
Q  561 aatcccaagaggaaacactaaagaaagctttttgatccttttaatggtgaaatctcactacttaaggtgattgcaatgtttcttagcccaa-tgaacctc 659  Q
    ||||| ||||| |||||| ||||||| |||||||||||||| ||||||||||||||||||| ||| ||| || |||||||||  | |||||   ||||||    
T  1417407 aatcctaagagaaaacacaaaagaaaactttttgatcctttcaatggtgaaatctcactacctaaagtgtttacaatgtttcccaacccaagataacctc 1417308  T
Q  660 actacaaagacactcaac 677  Q
    ||||||||||||||||||    
T  1417307 actacaaagacactcaac 1417290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 556 - 677
Target Start/End: Complemental strand, 1736225 - 1736103
Alignment:
Q  556 taataaatcccaagaggaaacactaaagaaagctttttgatccttttaatggtgaaatctcactacttaaggtgattgcaatgtttcttagcccaat-ga 654  Q
    |||| ||||| ||||| |||||| |||  ||||||||||||||||  |||||||||||||||||||  |||||| || |||||||||  | |||||| ||    
T  1736225 taatgaatcctaagagaaaacacaaaaagaagctttttgatccttccaatggtgaaatctcactacccaaggtgtttacaatgtttcccaacccaataga 1736126  T
Q  655 acctcactacaaagacactcaac 677  Q
     ||||||||||||||||||||||    
T  1736125 tcctcactacaaagacactcaac 1736103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 561 - 677
Target Start/End: Complemental strand, 40592698 - 40592581
Alignment:
Q  561 aatcccaagaggaaacactaaagaaagctttttgatccttttaatggtgaaatctcactacttaaggtgattgcaatgtttcttagcccaa-tgaacctc 659  Q
    ||||| ||||| |||||| |||| ||||||||||||||||  |||||||||||||||||||  |||||| || |||||||||  | |||||  || ||||    
T  40592698 aatcctaagagaaaacacaaaaggaagctttttgatccttccaatggtgaaatctcactacccaaggtgtttacaatgtttcccaacccaagagatcctc 40592599  T
Q  660 actacaaagacactcaac 677  Q
    ||||||||||||||||||    
T  40592598 actacaaagacactcaac 40592581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 556 - 677
Target Start/End: Original strand, 21711388 - 21711509
Alignment:
Q  556 taataaatcccaagaggaaacactaaagaaagctttttgatccttttaatggtgaaatctcactacttaaggtgattgcaatgtttcttagcccaa-tga 654  Q
    |||| ||||| ||||| |||||| |||| |||||||| |||||||  |||||||||||||||||||| |||||| || |||||||||  | |||||  ||    
T  21711388 taatgaatcctaagagaaaacacaaaaggaagctttt-gatccttccaatggtgaaatctcactactcaaggtgtttacaatgtttcccaacccaagaga 21711486  T
Q  655 acctcactacaaagacactcaac 677  Q
     ||||||||||||||||||||||    
T  21711487 tcctcactacaaagacactcaac 21711509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 561 - 642
Target Start/End: Complemental strand, 3715918 - 3715837
Alignment:
Q  561 aatcccaagaggaaacactaaagaaagctttttgatccttttaatggtgaaatctcactacttaaggtgattgcaatgtttc 642  Q
    ||||| ||||| |||||| |||||||||||||||||||||  |||||||||||||||||||  |||||| || |||||||||    
T  3715918 aatcctaagagaaaacacaaaagaaagctttttgatccttccaatggtgaaatctcactacccaaggtgtttacaatgtttc 3715837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 546 - 677
Target Start/End: Complemental strand, 3323622 - 3323490
Alignment:
Q  546 cccactctcttaataaatcccaagaggaaacactaaagaaagctttttgatccttttaatggtgaaatctcactacttaaggtgattgcaatgtttctta 645  Q
    ||||| |||| ||| ||| | ||||| |||||| |||| ||||||||||||| ||  |||||||||||||||||||  |||||| || |||||||||  |    
T  3323622 cccacactctcaatgaattctaagagaaaacacaaaaggaagctttttgatcattccaatggtgaaatctcactacccaaggtgtttacaatgtttccca 3323523  T
Q  646 gcccaa-tgaacctcactacaaagacactcaac 677  Q
     |||||  ||||||||||| |||||||||||||    
T  3323522 acccaagagaacctcactataaagacactcaac 3323490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 546 - 678
Target Start/End: Original strand, 8126785 - 8126918
Alignment:
Q  546 cccactctcttaataaatcccaagaggaaacactaaagaaagctttttgatccttttaatggtgaaatctcactacttaaggtgattgcaatgtttctta 645  Q
    ||||| |||| ||| ||||  ||||| |||||| |||  ||||||||||||||||  |||| ||||||||||||||  |||||| || |||||||||  |    
T  8126785 cccacactctcaatgaatcttaagagaaaacacaaaaagaagctttttgatccttccaatgatgaaatctcactacccaaggtgtttacaatgtttccca 8126884  T
Q  646 gcccaa-tgaacctcactacaaagacactcaact 678  Q
     |||||   |||||||||||||||||||||||||    
T  8126885 acccaagaaaacctcactacaaagacactcaact 8126918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 561 - 677
Target Start/End: Original strand, 36029264 - 36029380
Alignment:
Q  561 aatcccaagaggaaacactaaagaaagctttttgatccttttaatggtgaaatctcactacttaaggtgattgcaatgtttcttagcccaa-tgaacctc 659  Q
    ||||| ||||| |||||| |||| |||||||| |||||||  |||||||||||||||||||  |||||| || |||||||||  | |||||  || ||||    
T  36029264 aatcctaagagaaaacacaaaaggaagctttt-gatccttccaatggtgaaatctcactacccaaggtgtttacaatgtttcccaacccaagagatcctc 36029362  T
Q  660 actacaaagacactcaac 677  Q
    ||||||||||||||||||    
T  36029363 actacaaagacactcaac 36029380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 546 - 677
Target Start/End: Original strand, 40844805 - 40844942
Alignment:
Q  546 cccactctcttaataaatcccaagaggaaacactaaagaaagctttttgatccttttaatggtga-----aatctcactacttaaggtgattgcaatgtt 640  Q
    ||||| |||| ||| ||||| ||||| |||||| |||| ||||||||||||||||  |||||| |     ||||||| |||| |||||| || |||||||    
T  40844805 cccacactctcaatgaatcctaagagaaaacacaaaaggaagctttttgatccttccaatggtcaggtcaaatctcattactcaaggtgtttacaatgtt 40844904  T
Q  641 tcttagcccaat-gaacctcactacaaagacactcaac 677  Q
    ||| | |||||| || ||||||||||||||||||||||    
T  40844905 tctcaacccaatagatcctcactacaaagacactcaac 40844942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 561 - 677
Target Start/End: Original strand, 47649740 - 47649859
Alignment:
Q  561 aatcccaagaggaaacactaaagaaagctttttgatccttttaatggtgaaatctcactacttaaggtgattgcaatgtttcttagccc---aatgaacc 657  Q
    ||||| ||||| |||||| |||| ||||||||||||||||  ||||||||||||| |||||  |||||| || |||||||||  | |||   |  |||||    
T  47649740 aatcctaagagaaaacacaaaaggaagctttttgatccttcaaatggtgaaatctaactacccaaggtgtttacaatgtttcccaaccctcaagagaacc 47649839  T
Q  658 tcactacaaagacactcaac 677  Q
    ||||||||||||||||||||    
T  47649840 tcactacaaagacactcaac 47649859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 556 - 676
Target Start/End: Complemental strand, 47923825 - 47923704
Alignment:
Q  556 taataaatcccaagaggaaacactaaagaaagctttttgatccttttaatggtgaaatctcactacttaaggtgattgcaatgtttcttagcccaa-tga 654  Q
    |||| ||||| | ||| |||||| |||| ||||||||||||||||  |||||||||||||||||||  |||||| || |||||||||  | |||||  ||    
T  47923825 taatgaatcctacgagaaaacacaaaaggaagctttttgatccttccaatggtgaaatctcactacccaaggtgtttacaatgtttcccaacccaagaga 47923726  T
Q  655 acctcactacaaagacactcaa 676  Q
      ||||||||||||||||||||    
T  47923725 ttctcactacaaagacactcaa 47923704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 556 - 677
Target Start/End: Original strand, 48438381 - 48438502
Alignment:
Q  556 taataaatcccaagaggaaacactaaagaaagctttttgatccttttaatggtgaaatctcactacttaaggtgattgcaatgtttcttagcccaatgaa 655  Q
    |||| ||||| ||||| |||||| |||| ||||||||||||| ||  |||||||||||||||||||  |||||| || |||||||||  | || |  ||     
T  48438381 taatgaatcctaagagaaaacacaaaaggaagctttttgatcattccaatggtgaaatctcactacccaaggtgtttacaatgtttcccaaccaagagat 48438480  T
Q  656 cctcactacaaagacactcaac 677  Q
    ||| ||||||||||||||||||    
T  48438481 ccttactacaaagacactcaac 48438502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 546 - 642
Target Start/End: Complemental strand, 18552816 - 18552720
Alignment:
Q  546 cccactctcttaataaatcccaagaggaaacactaaagaaagctttttgatccttttaatggtgaaatctcactacttaaggtgattgcaatgtttc 642  Q
    ||||| |||| ||| ||||| ||||| |||||| |||| ||| ||||||||||||  |||||||||||||||||||  |||||| || |||||||||    
T  18552816 cccacactctcaatgaatcctaagagaaaacacaaaaggaagttttttgatccttccaatggtgaaatctcactacccaaggtgtttacaatgtttc 18552720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 546 - 677
Target Start/End: Complemental strand, 24695097 - 24694965
Alignment:
Q  546 cccactctcttaataaatcccaagaggaaacactaaagaaagctttttgatccttttaatggtgaaatctcactacttaaggtgattgcaatgtttctta 645  Q
    ||||| |||| ||| ||||| || || |||||| |||| ||||||||||||| ||  |||||||||||||||| ||  |||||| || |||||||||  |    
T  24695097 cccacactctcaatgaatcctaaaagaaaacacaaaaggaagctttttgatcattccaatggtgaaatctcaccacccaaggtgtttacaatgtttccca 24694998  T
Q  646 gcccaa-tgaacctcactacaaagacactcaac 677  Q
     |||||  || ||||||||||||||||||||||    
T  24694997 acccaagagatcctcactacaaagacactcaac 24694965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 590 - 677
Target Start/End: Complemental strand, 33386562 - 33386474
Alignment:
Q  590 ttttgatccttttaatggtgaaatctcactacttaaggtgattgcaatgtttcttagcccaa-tgaacctcactacaaagacactcaac 677  Q
    |||||||||||  |||||||||||||||||||  |||||| || |||||||||| | |||||  || ||||||||||||||||||||||    
T  33386562 ttttgatccttccaatggtgaaatctcactacccaaggtgtttacaatgtttctcaacccaagagatcctcactacaaagacactcaac 33386474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 608 - 677
Target Start/End: Complemental strand, 4386846 - 4386776
Alignment:
Q  608 tgaaatctcactacttaaggtgattgcaatgtttcttagcccaa-tgaacctcactacaaagacactcaac 677  Q
    ||||||||||||||| ||||||||| |||||||||  | |||||  |||||||||||||||||||||||||    
T  4386846 tgaaatctcactactcaaggtgattacaatgtttcccaacccaagagaacctcactacaaagacactcaac 4386776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 561 - 677
Target Start/End: Original strand, 35925649 - 35925765
Alignment:
Q  561 aatcccaagaggaaacactaaagaaagctttttgatccttttaatggtgaaatctcactacttaaggtgattgcaatgtttcttagccc-aatgaacctc 659  Q
    ||||| ||||| |||||| |||| |||||||| |||||||  |||||||||||||||||||  |||||| || |||||||||  | ||| || || ||||    
T  35925649 aatcctaagagaaaacacaaaaggaagctttt-gatccttccaatggtgaaatctcactacccaaggtgtttacaatgtttcccaacccaaaagatcctc 35925747  T
Q  660 actacaaagacactcaac 677  Q
    |||||||||||| |||||    
T  35925748 actacaaagacattcaac 35925765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 546 - 642
Target Start/End: Original strand, 25795935 - 25796031
Alignment:
Q  546 cccactctcttaataaatcccaagaggaaacactaaagaaagctttttgatccttttaatggtgaaatctcactacttaaggtgattgcaatgtttc 642  Q
    ||||| |||| ||| ||||| ||||| |||||  |||| ||||||||||||||||  |||||||||||||||||||  |||||| || || ||||||    
T  25795935 cccacactctcaatgaatcctaagagaaaacataaaaggaagctttttgatccttccaatggtgaaatctcactacccaaggtgtttacattgtttc 25796031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 590 - 677
Target Start/End: Complemental strand, 27986343 - 27986255
Alignment:
Q  590 ttttgatccttttaatggtgaaatctcactacttaaggtgattgcaatgtttcttagcccaa-tgaacctcactacaaagacactcaac 677  Q
    |||||||||||  |||||||||||||||||||  |||||| || |||||||||  | |||||  || ||||||||||||||||||||||    
T  27986343 ttttgatccttccaatggtgaaatctcactacccaaggtgtttacaatgtttcccaacccaagagatcctcactacaaagacactcaac 27986255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 561 - 677
Target Start/End: Complemental strand, 8370404 - 8370288
Alignment:
Q  561 aatcccaagaggaaacactaaagaaagctttttgatccttttaatggtgaaatctcactacttaaggtgattgcaatgtttcttagcccaa-tgaacctc 659  Q
    ||||| ||||| |||||| |||| || ||||| |||||||  |||||||||||||||||||  ||| || || |||||||||  | |||||  || ||||    
T  8370404 aatcctaagagaaaacacaaaaggaaactttt-gatccttccaatggtgaaatctcactacccaagatgtttacaatgtttcccaacccaagagatcctc 8370306  T
Q  660 actacaaagacactcaac 677  Q
    ||||||||||||||||||    
T  8370305 actacaaagacactcaac 8370288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 562 - 677
Target Start/End: Complemental strand, 3328272 - 3328156
Alignment:
Q  562 atcccaagaggaaacactaaagaaagctttttgatccttttaatggtgaaatctcactacttaaggtgattgcaatgtttcttagcccaa-tgaacctca 660  Q
    |||| ||||| |||||| |||| ||| ||||||||||||  |||| ||||||||||||||  |||||| || ||||||||   | |||||  ||| ||||    
T  3328272 atcctaagagaaaacacaaaaggaagttttttgatccttccaatgctgaaatctcactacccaaggtgtttacaatgttttccaacccaagagaagctca 3328173  T
Q  661 ctacaaagacactcaac 677  Q
    ||||||||||| |||||    
T  3328172 ctacaaagacattcaac 3328156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 590 - 677
Target Start/End: Original strand, 16264548 - 16264636
Alignment:
Q  590 ttttgatccttttaatggtgaaatctcactacttaaggtgattgcaatgtttcttagcccaa-tgaacctcactacaaagacactcaac 677  Q
    |||||||||||  |||||||||||||||||||  |||||| || |||||||||  | |||||  || ||||| ||||||||||||||||    
T  16264548 ttttgatccttccaatggtgaaatctcactacccaaggtgtttacaatgtttcccaacccaagagatcctcattacaaagacactcaac 16264636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 590 - 677
Target Start/End: Complemental strand, 26928486 - 26928398
Alignment:
Q  590 ttttgatccttttaatggtgaaatctcactacttaaggtgattgcaatgtttcttagcccaa-tgaacctcactacaaagacactcaac 677  Q
    |||||||||||  ||||||||||||||| |||  |||||| || |||||||||  | |||||  || ||||||||||||||||||||||    
T  26928486 ttttgatccttccaatggtgaaatctcattacccaaggtgtttacaatgtttcccaacccaagagatcctcactacaaagacactcaac 26928398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 580 - 677
Target Start/End: Original strand, 26299177 - 26299275
Alignment:
Q  580 aaagaaagctttttgatccttttaatggtgaaatctcactacttaaggtgattgcaatgtttcttagcccaa-tgaacctcactacaaagacactcaac 677  Q
    |||| ||||||||||||  ||  |||||||||||||||||||  |||||| || |||||||||  | |||||  || |||||||||||||||| |||||    
T  26299177 aaaggaagctttttgataattccaatggtgaaatctcactacccaaggtgtttacaatgtttcccaacccaagagatcctcactacaaagacattcaac 26299275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 5e-21; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 546 - 677
Target Start/End: Original strand, 31056198 - 31056332
Alignment:
Q  546 cccactctcttaataaatcccaagaggaaacactaaagaaagctttttgatccttttaatggtgaaatctcactacttaaggtgattgcaatgtttctta 645  Q
    ||||| |||| ||| ||||| ||||| |||||| |||| ||||||||||||||||| |||||||||||||||||||  |||||| || |||||||||  |    
T  31056198 cccacactctcaatgaatcctaagagaaaacacaaaaggaagctttttgatcctttcaatggtgaaatctcactacccaaggtgtttacaatgtttccca 31056297  T
Q  646 gccc---aatgaacctcactacaaagacactcaac 677  Q
     |||   |  |||||||||||||||||||||||||    
T  31056298 accctcaagagaacctcactacaaagacactcaac 31056332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 556 - 677
Target Start/End: Original strand, 21630110 - 21630232
Alignment:
Q  556 taataaatcccaagaggaaacactaaagaaagctttttgatccttttaatggtgaaatctcactacttaaggtgattgcaatgtttcttagcccaa-tga 654  Q
    |||| ||||| ||||| |||||| |||| ||||||||||||||||  |||||||||||||||||||  |||||| || |||||||||  | |||||  ||    
T  21630110 taatgaatcctaagagaaaacacaaaaggaagctttttgatccttccaatggtgaaatctcactacccaaggtgtttacaatgtttcccaacccaagaga 21630209  T
Q  655 acctcactacaaagacactcaac 677  Q
     ||||||||||||||||||||||    
T  21630210 tcctcactacaaagacactcaac 21630232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 556 - 677
Target Start/End: Complemental strand, 33528556 - 33528434
Alignment:
Q  556 taataaatcccaagaggaaacactaaagaaagctttttgatccttttaatggtgaaatctcactacttaaggtgattgcaatgtttcttagcccaa-tga 654  Q
    |||| ||||| ||||| |||||| |||| ||||||||||||||||  |||||||||||||||||||  || ||| || |||||||||  | |||||  ||    
T  33528556 taatgaatcctaagagaaaacacaaaaggaagctttttgatccttccaatggtgaaatctcactacccaatgtgtttacaatgtttcccaacccaagaga 33528457  T
Q  655 acctcactacaaagacactcaac 677  Q
     ||||||||||||||||||||||    
T  33528456 tcctcactacaaagacactcaac 33528434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 561 - 669
Target Start/End: Complemental strand, 10707179 - 10707070
Alignment:
Q  561 aatcccaagaggaaacactaaagaaagctttttgatccttttaatggtgaaatctcactacttaaggtgattgcaatgtttcttagcccaa-tgaacctc 659  Q
    ||||| ||||| |||||| |||| |||||||||||||||| |||||||||||||| |||||  |||||| || |||||||||| | |||||  || ||||    
T  10707179 aatcctaagagaaaacacaaaaggaagctttttgatccttctaatggtgaaatctaactacccaaggtgtttacaatgtttctcaacccaagagatcctc 10707080  T
Q  660 actacaaaga 669  Q
    ||||||||||    
T  10707079 actacaaaga 10707070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 561 - 677
Target Start/End: Original strand, 34389021 - 34389138
Alignment:
Q  561 aatcccaagaggaaacactaaagaaagctttttgatccttttaatggtgaaatctcactacttaaggtgattgcaatgtttcttagcccaa-tgaacctc 659  Q
    ||||| ||||| |||||| |||| ||||||||||||||||  |||||||||||||||||||  |||||| || |||||||||  | |||||  || ||||    
T  34389021 aatcctaagagaaaacacaaaaggaagctttttgatccttccaatggtgaaatctcactacccaaggtgtttacaatgtttcccaacccaagagatcctc 34389120  T
Q  660 actacaaagacactcaac 677  Q
    ||||||||||||| ||||    
T  34389121 actacaaagacacacaac 34389138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 546 - 677
Target Start/End: Complemental strand, 14698951 - 14698819
Alignment:
Q  546 cccactctcttaataaatcccaagaggaaacactaaagaaagctttttgatccttttaatggtgaaatctcactacttaaggtgattgcaatgtttctta 645  Q
    ||||| |||| ||| ||||| ||||| |||||| |||| ||||||||||||||||  ||| |||||||||||||||  |||||| || |||||||||  |    
T  14698951 cccacactctcaatgaatcctaagagaaaacacaaaaggaagctttttgatccttccaatagtgaaatctcactacccaaggtgtttacaatgtttccca 14698852  T
Q  646 gccc-aatgaacctcactacaaagacactcaac 677  Q
     ||| |  || ||||||||||||||||||||||    
T  14698851 acccgagagatcctcactacaaagacactcaac 14698819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 556 - 677
Target Start/End: Original strand, 17865370 - 17865492
Alignment:
Q  556 taataaatcccaagaggaaacactaaagaaagctttttgatccttttaatggtgaaatctcactacttaaggtgattgcaatgtttcttagcccaa-tga 654  Q
    |||| ||||| ||||| |||||| |||| |||||||||||||||| || | |||||||||||||||  |||||| || |||||||||  | |||||  ||    
T  17865370 taatgaatcctaagagaaaacacaaaaggaagctttttgatccttctatttgtgaaatctcactacccaaggtgtttacaatgtttcccaacccaagaga 17865469  T
Q  655 acctcactacaaagacactcaac 677  Q
     | ||||||||||||||||||||    
T  17865470 tcttcactacaaagacactcaac 17865492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 567 - 677
Target Start/End: Original strand, 33118311 - 33118422
Alignment:
Q  567 aagaggaaacactaaagaaagctttttgatccttttaatggtgaaatctcactacttaaggtgattgcaatgtttcttagcccaa-tgaacctcactaca 665  Q
    ||||| |||||| |||| ||||||||||||||||  ||||| |||||||||||||  |||||| || ||||||| |  | |||||  || ||||||||||    
T  33118311 aagagaaaacacaaaaggaagctttttgatccttccaatggcgaaatctcactacccaaggtgtttacaatgttccccaacccaagagatcctcactaca 33118410  T
Q  666 aagacactcaac 677  Q
    ||||||||||||    
T  33118411 aagacactcaac 33118422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 580 - 677
Target Start/End: Complemental strand, 10445375 - 10445277
Alignment:
Q  580 aaagaaagctttttgatccttttaatggtgaaatctcactacttaaggtgattgcaatgtttcttagccc-aatgaacctcactacaaagacactcaac 677  Q
    |||| ||||||||||||||||  |||||||||||||||||||  |||||| || |||||||||  | ||| |  ||||||||||||||||||| |||||    
T  10445375 aaaggaagctttttgatccttccaatggtgaaatctcactacccaaggtgtttacaatgtttcccaacccgagagaacctcactacaaagacattcaac 10445277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 561 - 673
Target Start/End: Original strand, 13569499 - 13569612
Alignment:
Q  561 aatcccaagaggaaacactaaagaaagctttttgatccttttaatggtgaaatctcactacttaaggtgattgcaatgtttcttagcccaa-tgaacctc 659  Q
    ||||| ||||| |||||| |||| ||||||||||||||||  ||||||||||||||||||   |||||| ||  ||||||||  | |||||  || ||||    
T  13569499 aatcctaagagaaaacacaaaaggaagctttttgatccttccaatggtgaaatctcactatccaaggtgtttataatgtttcccaacccaagagatcctc 13569598  T
Q  660 actacaaagacact 673  Q
    ||||||||||||||    
T  13569599 actacaaagacact 13569612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 546 - 677
Target Start/End: Complemental strand, 2869634 - 2869502
Alignment:
Q  546 cccactctcttaataaatcccaagaggaaacactaaagaaagctttttgatccttttaatggtgaaatctcactacttaaggtgattgcaatgtttctta 645  Q
    ||||| |||| ||| ||||| ||||| ||||||||| | |||||||||||| |||  ||||| |||||||||||||  || ||| || ||||||||   |    
T  2869634 cccacactctcaatgaatcctaagagaaaacactaacggaagctttttgattcttccaatggcgaaatctcactacccaatgtgtttacaatgttttcca 2869535  T
Q  646 gcccaa-tgaacctcactacaaagacactcaac 677  Q
     | |||  |||||||||||||||||||||||||    
T  2869534 actcaagagaacctcactacaaagacactcaac 2869502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 590 - 677
Target Start/End: Complemental strand, 36757660 - 36757572
Alignment:
Q  590 ttttgatccttttaatggtgaaatctcactacttaaggtgattgcaatgtttcttagcccaa-tgaacctcactacaaagacactcaac 677  Q
    |||||||||||  |||||||||||||||||||  |||||| || |||||||||  | |||||  || ||||||||||||||||||||||    
T  36757660 ttttgatccttccaatggtgaaatctcactacccaaggtgtttacaatgtttcccaacccaagagatcctcactacaaagacactcaac 36757572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 580 - 642
Target Start/End: Original strand, 8040253 - 8040315
Alignment:
Q  580 aaagaaagctttttgatccttttaatggtgaaatctcactacttaaggtgattgcaatgtttc 642  Q
    |||| ||||||||||||||||  |||||||||||||||||||  |||||| || |||||||||    
T  8040253 aaaggaagctttttgatccttccaatggtgaaatctcactacccaaggtgtttacaatgtttc 8040315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 556 - 677
Target Start/End: Original strand, 39483098 - 39483220
Alignment:
Q  556 taataaatcccaagaggaaacactaaagaaagctttttgatccttttaatggtgaaatctcactacttaaggtgattgcaatgtttcttagcccaa-tga 654  Q
    |||| ||||| ||||| |||||| |||| ||| ||||||||| ||  |||||||||||||||||||  |||||| || |||| ||||  | |||||  ||    
T  39483098 taatgaatcctaagagaaaacacaaaaggaagttttttgatcattccaatggtgaaatctcactacccaaggtgtttacaatatttcccaacccaagaga 39483197  T
Q  655 acctcactacaaagacactcaac 677  Q
     |||||| |||||||||||||||    
T  39483198 tcctcacaacaaagacactcaac 39483220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 546 - 620
Target Start/End: Original strand, 40015080 - 40015154
Alignment:
Q  546 cccactctcttaataaatcccaagaggaaacactaaagaaagctttttgatccttttaatggtgaaatctcacta 620  Q
    ||||| |||| ||||||||| ||||  || ||| |||| ||||||||||||||||  ||||||||||||||||||    
T  40015080 cccacactctcaataaatcctaagaaaaatcacaaaaggaagctttttgatccttccaatggtgaaatctcacta 40015154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 546 - 677
Target Start/End: Complemental strand, 15903832 - 15903700
Alignment:
Q  546 cccactctcttaataaatcccaagaggaaacactaaagaaagctttttgatccttttaatggtgaaatctcactacttaaggtgattgcaatgtttctta 645  Q
    ||||| |||| ||| ||||| | ||| |||||| ||||||| |||||| ||| ||  ||||||||||||||| ||   || ||| || ||||||||| ||    
T  15903832 cccacactctcaatgaatcctatgagaaaacacaaaagaaatcttttttatcattccaatggtgaaatctcattatccaatgtgtttacaatgtttccta 15903733  T
Q  646 gcccaa-tgaacctcactacaaagacactcaac 677  Q
     |||||  ||||||||||||||||||| |||||    
T  15903732 acccaagagaacctcactacaaagacattcaac 15903700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 590 - 677
Target Start/End: Original strand, 40739033 - 40739121
Alignment:
Q  590 ttttgatccttttaatggtgaaatctcactacttaaggtgattgcaatgtttcttagcccaa-tgaacctcactacaaagacactcaac 677  Q
    |||||||||||  ||||||||||||||| |||  |||||| || |||||||||  | |||||  || ||||||||||||||||||||||    
T  40739033 ttttgatccttccaatggtgaaatctcattacccaaggtgtttacaatgtttcccaacccaagagatcctcactacaaagacactcaac 40739121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 561 - 677
Target Start/End: Complemental strand, 8390076 - 8389959
Alignment:
Q  561 aatcccaagaggaaacactaaagaaagctttttgatccttttaatggtgaaatctcactacttaaggtgattgcaatgtttcttagcccaa-tgaacctc 659  Q
    ||||| ||||| |||||| | || |||||||||||| |||  |||||| |||||||||||   |||||| || ||||||||| || |||||  || | ||    
T  8390076 aatcctaagagaaaacacaagaggaagctttttgattcttccaatggtaaaatctcactatccaaggtgtttacaatgtttcctaacccaagagatcatc 8389977  T
Q  660 actacaaagacactcaac 677  Q
    ||||||||||| ||||||    
T  8389976 actacaaagaccctcaac 8389959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 8e-20; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 552 - 677
Target Start/End: Complemental strand, 47102775 - 47102649
Alignment:
Q  552 ctcttaataaatcccaagaggaaacactaaagaaagctttttgatccttttaatggtgaaatctcactacttaaggtgattgcaatgtttcttagcccaa 651  Q
    |||| ||| ||||| ||||  |||||| |||||||||||||||||||||  |||| ||||||||||||||  |||||| || |||||||||  | |||||    
T  47102775 ctctcaatgaatcctaagaaaaaacacaaaagaaagctttttgatccttccaatgatgaaatctcactacccaaggtgtttacaatgtttcccaacccaa 47102676  T
Q  652 -tgaacctcactacaaagacactcaac 677  Q
      |||||||||||||||||||||||||    
T  47102675 gagaacctcactacaaagacactcaac 47102649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 546 - 677
Target Start/End: Complemental strand, 40816758 - 40816624
Alignment:
Q  546 cccactctcttaataaatcccaagaggaaacactaaagaaagctttttgatccttttaatggtgaaatctcactacttaaggtgattgcaatgtttctta 645  Q
    ||||| |||| ||| ||||| ||||| |||||| |||| ||||||||||||||||  |||||||||||||||||||  |||||| || |||||||||  |    
T  40816758 cccacactctcaatgaatcctaagagaaaacacaaaaggaagctttttgatccttccaatggtgaaatctcactacccaaggtgtttacaatgtttccca 40816659  T
Q  646 gccc---aatgaacctcactacaaagacactcaac 677  Q
     |||   |  |||||||||||||||||||||||||    
T  40816658 accctcaagagaacctcactacaaagacactcaac 40816624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 556 - 677
Target Start/End: Original strand, 29651978 - 29652100
Alignment:
Q  556 taataaatcccaagaggaaacactaaagaaagctttttgatccttttaatggtgaaatctcactacttaaggtgattgcaatgtttcttagccc-aatga 654  Q
    |||| ||||| ||||| |||||| |||| || |||||||||||||  |||||||||||||||||||  |||||| || |||||||||  | ||| || ||    
T  29651978 taatgaatcctaagagaaaacacaaaaggaaactttttgatccttccaatggtgaaatctcactacccaaggtgtttacaatgtttcccaacccaaaaga 29652077  T
Q  655 acctcactacaaagacactcaac 677  Q
     ||||||||||||||||||||||    
T  29652078 tcctcactacaaagacactcaac 29652100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 561 - 677
Target Start/End: Original strand, 13598570 - 13598687
Alignment:
Q  561 aatcccaagaggaaacactaaagaaagctttttgatccttttaatggtgaaatctcactacttaaggtgattgcaatgtttcttagcccaa-tgaacctc 659  Q
    ||||| ||||| |||||| |||| ||||||||||||||||  |||||||||||||||||||  |||||| || ||||||||   | |||||  || ||||    
T  13598570 aatcctaagagaaaacacaaaaggaagctttttgatccttccaatggtgaaatctcactacccaaggtgtttacaatgtttgccaacccaagagatcctc 13598669  T
Q  660 actacaaagacactcaac 677  Q
    ||||||||||||||||||    
T  13598670 actacaaagacactcaac 13598687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 573 - 677
Target Start/End: Complemental strand, 47098740 - 47098635
Alignment:
Q  573 aaacactaaagaaagctttttgatccttttaatggtgaaatctcactacttaaggtgattgcaatgtttcttagcccaa-tgaacctcactacaaagaca 671  Q
    |||||| |||| ||||||||||||||||  |||||||||||||||||||  |||||| || |||||||||  | |||||  ||||||| |||||||||||    
T  47098740 aaacacaaaaggaagctttttgatccttccaatggtgaaatctcactacccaaggtgtttacaatgtttcccaacccaagagaacctcgctacaaagaca 47098641  T
Q  672 ctcaac 677  Q
    ||||||    
T  47098640 ctcaac 47098635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 556 - 642
Target Start/End: Complemental strand, 16124446 - 16124360
Alignment:
Q  556 taataaatcccaagaggaaacactaaagaaagctttttgatccttttaatggtgaaatctcactacttaaggtgattgcaatgtttc 642  Q
    |||| ||||| ||||| |||||| |||| ||||||||||||||||  |||||||||||||||||||  |||||| || |||||||||    
T  16124446 taatgaatcctaagagaaaacacaaaaggaagctttttgatccttccaatggtgaaatctcactacccaaggtgtttacaatgtttc 16124360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 567 - 677
Target Start/End: Complemental strand, 27104322 - 27104212
Alignment:
Q  567 aagaggaaacactaaagaaagctttttgatccttttaatggtgaaatctcactacttaaggtgattgcaatgtttcttagcccaatgaacctcactacaa 666  Q
    ||||| |||||| |||| |||||||||||| |||  |||||||||||||||||||  |||||| ||  ||||||||  | |||||   ||||||||||||    
T  27104322 aagagaaaacacaaaaggaagctttttgattcttccaatggtgaaatctcactacccaaggtgcttataatgtttcccaacccaagagacctcactacaa 27104223  T
Q  667 agacactcaac 677  Q
    |||||||||||    
T  27104222 agacactcaac 27104212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 585 - 677
Target Start/End: Complemental strand, 9022809 - 9022716
Alignment:
Q  585 aagctttttgatccttttaatggtgaaatctcactacttaaggtgattgcaatgtttcttagcccaa-tgaacctcactacaaagacactcaac 677  Q
    ||||||||| ||||||  |||||||||||||||||||  |||||| || |||||||||| | |||||  ||||||||||||||||||| |||||    
T  9022809 aagcttttttatccttccaatggtgaaatctcactacgaaaggtgtttacaatgtttctcaacccaagagaacctcactacaaagacattcaac 9022716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 567 - 677
Target Start/End: Original strand, 9476438 - 9476549
Alignment:
Q  567 aagaggaaacactaaagaaagctttttgatccttttaatggtgaaatctcactacttaaggtgattgcaatgtttcttagcccaa-tgaacctcactaca 665  Q
    ||||| |||||| |||| ||||||||||||||||  |||||||||||||||||||  ||| || || |||||||||  | || ||  |||||||||||||    
T  9476438 aagagaaaacacaaaaggaagctttttgatccttcaaatggtgaaatctcactacccaagatgtttacaatgtttcccaaccaaagagaacctcactaca 9476537  T
Q  666 aagacactcaac 677  Q
    |||||| |||||    
T  9476538 aagacattcaac 9476549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 567 - 677
Target Start/End: Original strand, 19073104 - 19073217
Alignment:
Q  567 aagaggaaacactaaagaaagctttttgatccttttaatggtgaaatctcactacttaaggtgattgcaatgtttcttagccc---aatgaacctcacta 663  Q
    ||||| |||||| |||| ||||||||||||||||  ||||||||||||||||||   |||||| || |||||||||  | |||   |  |||||||||||    
T  19073104 aagagaaaacacaaaaggaagctttttgatccttccaatggtgaaatctcactatccaaggtgtttacaatgtttcccaaccctcaagagaacctcacta 19073203  T
Q  664 caaagacactcaac 677  Q
    ||||||||||||||    
T  19073204 caaagacactcaac 19073217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 567 - 677
Target Start/End: Original strand, 19120994 - 19121107
Alignment:
Q  567 aagaggaaacactaaagaaagctttttgatccttttaatggtgaaatctcactacttaaggtgattgcaatgtttcttagccc---aatgaacctcacta 663  Q
    ||||| |||||| |||| ||||||||||||||||  ||||||||||||||||||   |||||| || |||||||||  | |||   |  |||||||||||    
T  19120994 aagagaaaacacaaaaggaagctttttgatccttccaatggtgaaatctcactatccaaggtgtttacaatgtttcccaaccctcaagagaacctcacta 19121093  T
Q  664 caaagacactcaac 677  Q
    ||||||||||||||    
T  19121094 caaagacactcaac 19121107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 573 - 673
Target Start/End: Original strand, 22819613 - 22819714
Alignment:
Q  573 aaacactaaagaaagctttttgatccttttaatggtgaaatctcactacttaaggtgattgcaatgtttcttagcccaa-tgaacctcactacaaagaca 671  Q
    |||||| |||| ||||||||||||||||  ||||||||||| | |||||  |||||| || |||||||||  | |||||  |||||||||||||||||||    
T  22819613 aaacacaaaaggaagctttttgatccttccaatggtgaaatgtaactacccaaggtgtttacaatgtttcccaacccaagagaacctcactacaaagaca 22819712  T
Q  672 ct 673  Q
    ||    
T  22819713 ct 22819714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 590 - 677
Target Start/End: Original strand, 3281906 - 3281994
Alignment:
Q  590 ttttgatccttttaatggtgaaatctcactacttaaggtgattgcaatgtttcttagcccaa-tgaacctcactacaaagacactcaac 677  Q
    |||||||||||  |||||||||||||||||||  |||||| || |||||||||  | |||||  || ||||||||||||||||||||||    
T  3281906 ttttgatccttccaatggtgaaatctcactacccaaggtgtttacaatgtttcccaacccaagagatcctcactacaaagacactcaac 3281994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 590 - 677
Target Start/End: Complemental strand, 26644796 - 26644708
Alignment:
Q  590 ttttgatccttttaatggtgaaatctcactacttaaggtgattgcaatgtttcttagccc-aatgaacctcactacaaagacactcaac 677  Q
    |||||||||||  |||||||||||||||||||| |||||| || |||||||||  | ||| || || | ||||||||||||||||||||    
T  26644796 ttttgatccttccaatggtgaaatctcactactcaaggtgtttacaatgtttcccaacccaaaagatcttcactacaaagacactcaac 26644708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 546 - 677
Target Start/End: Original strand, 32889595 - 32889725
Alignment:
Q  546 cccactctcttaataaatcccaagaggaaacactaaagaaagctttttgatccttttaatggtgaaatctcactacttaaggtgattgcaatgtttctta 645  Q
    ||||| |||| ||| ||||| ||||| |||||| |||||| |||||| || ||||  |||||||||||||||||||  |||||| || |||||||||  |    
T  32889595 cccacactctcaatgaatcctaagagaaaacacaaaagaa-gctttt-gaaccttccaatggtgaaatctcactacccaaggtgtttacaatgtttccca 32889692  T
Q  646 gccc-aatgaacctcactacaaagacactcaac 677  Q
     ||| ||  ||||||||||||||||||||||||    
T  32889693 acccaaaaaaacctcactacaaagacactcaac 32889725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 561 - 677
Target Start/End: Complemental strand, 47703862 - 47703743
Alignment:
Q  561 aatcccaagaggaaacactaaagaaagctttttgatccttttaatggtgaaatctcactacttaaggtgattgcaatgtttcttagccc---aatgaacc 657  Q
    ||||| ||||| |||||| |||| ||| ||||| ||| ||  |||||||||||||||||||  |||||| || |||||||||  | |||   |  |||||    
T  47703862 aatcctaagagaaaacacaaaaggaagtttttttatcattccaatggtgaaatctcactacccaaggtgtttacaatgtttcccaaccctcaagagaacc 47703763  T
Q  658 tcactacaaagacactcaac 677  Q
    ||||||||||||||||||||    
T  47703762 tcactacaaagacactcaac 47703743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 590 - 677
Target Start/End: Complemental strand, 13604520 - 13604432
Alignment:
Q  590 ttttgatccttttaatggtgaaatctcactacttaaggtgattgcaatgtttcttagcccaa-tgaacctcactacaaagacactcaac 677  Q
    |||||||||||  |||||||||||||||||||  |||||| || |||||||||  | |||||  || |||||||||||||| |||||||    
T  13604520 ttttgatccttccaatggtgaaatctcactacccaaggtgtttacaatgtttcccaacccaagagatcctcactacaaagatactcaac 13604432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 1e-18; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 546 - 642
Target Start/End: Complemental strand, 7493115 - 7493019
Alignment:
Q  546 cccactctcttaataaatcccaagaggaaacactaaagaaagctttttgatccttttaatggtgaaatctcactacttaaggtgattgcaatgtttc 642  Q
    ||||| |||| ||||||||| ||||  ||||||||||| |||||||||||||||| |||| |||||||||||||||  |||||| || |||||||||    
T  7493115 cccacactctcaataaatcctaagaaaaaacactaaaggaagctttttgatccttctaattgtgaaatctcactacccaaggtgtttacaatgtttc 7493019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 561 - 677
Target Start/End: Complemental strand, 4696535 - 4696418
Alignment:
Q  561 aatcccaagaggaaacactaaagaaagctttttgatccttttaatggtgaaatctcactacttaaggtgattgcaatgtttcttagcccaa-tgaacctc 659  Q
    ||||| ||||| |||||| |||| ||||||||||||| ||  |||||||||||||||||||  |||||| || |||||||||  | |||||  || ||||    
T  4696535 aatcctaagagaaaacacaaaaggaagctttttgatctttccaatggtgaaatctcactacccaaggtgtttacaatgtttcccaacccaagagatcctc 4696436  T
Q  660 actacaaagacactcaac 677  Q
    ||||||||||||||||||    
T  4696435 actacaaagacactcaac 4696418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 546 - 677
Target Start/End: Complemental strand, 19752335 - 19752204
Alignment:
Q  546 cccactctcttaataaatcccaagaggaaacactaaagaaagctttttgatccttttaatggtgaaatctcactacttaaggtgattgcaatgtttctta 645  Q
    ||||| |||| ||| ||||| ||||| |||||| |||| ||||||||||||||||  |||| ||||||||||||||  |||||| || |||| ||||  |    
T  19752335 cccacactctcaatgaatcctaagagaaaacac-aaaggaagctttttgatccttccaatgatgaaatctcactacccaaggtgtttacaatatttcaca 19752237  T
Q  646 gcccaa-tgaacctcactacaaagacactcaac 677  Q
     |||||  |||||||||||||||||||||||||    
T  19752236 acccaagagaacctcactacaaagacactcaac 19752204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 567 - 677
Target Start/End: Complemental strand, 26403150 - 26403037
Alignment:
Q  567 aagaggaaacactaaagaaagctttttgatccttttaatggtgaaatctcactacttaaggtgattgcaatgtttcttagccc---aatgaacctcacta 663  Q
    ||||| |||||| |||| ||||||||||||||||  |||||||||||||||||||  |||||| || |||||||||  | |||   |  |||||||||||    
T  26403150 aagagaaaacacaaaaggaagctttttgatccttccaatggtgaaatctcactacccaaggtgtttacaatgtttcccaaccctcaagagaacctcacta 26403051  T
Q  664 caaagacactcaac 677  Q
    ||||||||||||||    
T  26403050 caaagacactcaac 26403037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 556 - 677
Target Start/End: Original strand, 6127388 - 6127512
Alignment:
Q  556 taataaatcccaagaggaaacactaaagaaagctttttgatccttttaatggtgaaatctcactacttaaggtgattgcaatgtttcttagccc---aat 652  Q
    |||| ||||| ||||| |||||| |||||||||||||||||||||  |||||||||||||||||||  ||  || || |||||||||  | |||   |      
T  6127388 taatgaatcctaagagaaaacacaaaagaaagctttttgatccttccaatggtgaaatctcactacccaaaatgtttacaatgtttcccaaccctcaaga 6127487  T
Q  653 gaacctcactacaaagacactcaac 677  Q
    |||||||||||||||||||||||||    
T  6127488 gaacctcactacaaagacactcaac 6127512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 573 - 677
Target Start/End: Complemental strand, 5702395 - 5702290
Alignment:
Q  573 aaacactaaagaaagctttttgatccttttaatggtgaaatctcactacttaaggtgattgcaatgtttcttagcccaa-tgaacctcactacaaagaca 671  Q
    |||||| |||| ||||||||||||| ||  |||||||||||||||||||  |||||| || |||| ||||  | |||||  || ||||||||||||||||    
T  5702395 aaacacaaaaggaagctttttgatcattccaatggtgaaatctcactacccaaggtgtttacaatatttcccaacccaagagatcctcactacaaagaca 5702296  T
Q  672 ctcaac 677  Q
    ||||||    
T  5702295 ctcaac 5702290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 573 - 677
Target Start/End: Complemental strand, 23799491 - 23799386
Alignment:
Q  573 aaacactaaagaaagctttttgatccttttaatggtgaaatctcactacttaaggtgattgcaatgtttcttagcccaa-tgaacctcactacaaagaca 671  Q
    |||||| |||| ||||||||||||||||  |||||||||||||| ||||| |||||| || ||||||| |  | |||||  || |||| |||||||||||    
T  23799491 aaacacaaaaggaagctttttgatccttccaatggtgaaatctccctactcaaggtgtttacaatgttccccaacccaagagatcctctctacaaagaca 23799392  T
Q  672 ctcaac 677  Q
    ||||||    
T  23799391 ctcaac 23799386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 590 - 677
Target Start/End: Original strand, 4456227 - 4456315
Alignment:
Q  590 ttttgatccttttaatggtgaaatctcactacttaaggtgattgcaatgtttcttagcccaa-tgaacctcactacaaagacactcaac 677  Q
    ||||||||||| ||||||||||||||||||||  |||||| || |||||||||  | |||||  || |||||||||| |||||||||||    
T  4456227 ttttgatccttctaatggtgaaatctcactacccaaggtgtttacaatgtttcccaacccaagagatcctcactacagagacactcaac 4456315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 590 - 677
Target Start/End: Original strand, 7412539 - 7412627
Alignment:
Q  590 ttttgatccttttaatggtgaaatctcactacttaaggtgattgcaatgtttcttagcccaa-tgaacctcactacaaagacactcaac 677  Q
    |||||||||||| |||||||||||||||||||  |||||| || |||||||||  | |||||  || |||| |||||||||||||||||    
T  7412539 ttttgatcctttcaatggtgaaatctcactacccaaggtgtttacaatgtttcccaacccaagagatcctctctacaaagacactcaac 7412627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 552 - 677
Target Start/End: Original strand, 3051281 - 3051407
Alignment:
Q  552 ctcttaataaatcccaagaggaaacactaaagaaagctttttgatccttttaatggtgaaatctcactacttaaggtgattgcaatgtttcttagcccaa 651  Q
    |||| ||| ||||| ||||| || ||| |||| ||||||||||||| ||  |||||||||||||||||||  ||| || || |||||||||  | | |||    
T  3051281 ctctcaatgaatcctaagagaaagcacaaaaggaagctttttgatctttccaatggtgaaatctcactacccaagatgtttacaatgtttcccaactcaa 3051380  T
Q  652 -tgaacctcactacaaagacactcaac 677  Q
      ||||| |||||||||||||||||||    
T  3051381 gagaaccccactacaaagacactcaac 3051407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 561 - 677
Target Start/End: Complemental strand, 5990488 - 5990373
Alignment:
Q  561 aatcccaagaggaaacactaaagaaagctttttgatccttttaatggtgaaatctcactacttaaggtgattgcaatgtttcttagcccaa-tgaacctc 659  Q
    ||||| ||||| ||||||||||||||||||||||| | ||  |||||||||||||||| |   ||| ||||| |||||||||  | |||||  |||||||    
T  5990488 aatcctaagagaaaacactaaagaaagctttttgacctttcgaatggtgaaatctcacaaaccaagatgattacaatgtttcccaacccaagagaacctc 5990389  T
Q  660 actacaaagacactcaac 677  Q
    |||  |||||||||||||    
T  5990388 act--aaagacactcaac 5990373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 585 - 641
Target Start/End: Complemental strand, 9054323 - 9054267
Alignment:
Q  585 aagctttttgatccttttaatggtgaaatctcactacttaaggtgattgcaatgttt 641  Q
    ||||||||||||||||  |||||||||||||||||||  |||||||||  |||||||    
T  9054323 aagctttttgatccttccaatggtgaaatctcactacccaaggtgattataatgttt 9054267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 573 - 642
Target Start/End: Original strand, 28307744 - 28307813
Alignment:
Q  573 aaacactaaagaaagctttttgatccttttaatggtgaaatctcactacttaaggtgattgcaatgtttc 642  Q
    |||||| |||||||||||||| ||||||  ||| |||||||||||||||  |||||| |  |||||||||    
T  28307744 aaacacaaaagaaagcttttttatccttccaattgtgaaatctcactacccaaggtgttaacaatgtttc 28307813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 2e-17; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 556 - 677
Target Start/End: Complemental strand, 5269132 - 5269010
Alignment:
Q  556 taataaatcccaagaggaaacactaaagaaagctttttgatccttttaatggtgaaatctcactacttaaggtgattgcaatgtttcttagcccaa-tga 654  Q
    |||| ||||| ||||| |||||| |||| ||||||||||||||||  ||||||||||||||||||   |||||| || |||||||||  | |||||  ||    
T  5269132 taatgaatcctaagagaaaacacaaaaggaagctttttgatccttccaatggtgaaatctcactatccaaggtgtttacaatgtttcccaacccaagaga 5269033  T
Q  655 acctcactacaaagacactcaac 677  Q
     ||||||||||||||||||||||    
T  5269032 tcctcactacaaagacactcaac 5269010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 573 - 677
Target Start/End: Complemental strand, 25861948 - 25861843
Alignment:
Q  573 aaacactaaagaaagctttttgatccttttaatggtgaaatctcactacttaaggtgattgcaatgtttcttagcccaa-tgaacctcactacaaagaca 671  Q
    |||||| |||| ||| ||||||||||||  |||||||||||||||||||| |||||| || |||||||||  | |||||  || ||||||||||||||||    
T  25861948 aaacacaaaaggaagttttttgatccttccaatggtgaaatctcactactcaaggtgtttacaatgtttcccaacccaagagatcctcactacaaagaca 25861849  T
Q  672 ctcaac 677  Q
    ||||||    
T  25861848 ctcaac 25861843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 561 - 676
Target Start/End: Original strand, 5112407 - 5112523
Alignment:
Q  561 aatcccaagaggaaacactaaagaaagctttttgatccttttaatggtgaaatctcactacttaaggtgattgcaatgtttcttagcccaa-tgaacctc 659  Q
    ||||| ||||| |||||  |||| ||||||||||||||||  |||||||||||||||||||  |||||| || |||||||||  | |||||  |||||||    
T  5112407 aatcctaagagaaaacataaaaggaagctttttgatccttccaatggtgaaatctcactacccaaggtgtttacaatgtttcccaacccaagagaacctc 5112506  T
Q  660 actacaaagacactcaa 676  Q
    || ||||||||||||||    
T  5112507 acaacaaagacactcaa 5112523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 561 - 677
Target Start/End: Original strand, 3777719 - 3777836
Alignment:
Q  561 aatcccaagaggaaacactaaagaaagctttttgatccttttaatggtgaaatctcactacttaaggtgattgcaatgtttcttagcccaa-tgaacctc 659  Q
    ||||| ||||| ||| || |||| ||||||||||||| ||  |||||||||||||||||||  |||||| || |||||||||  | |||||  || ||||    
T  3777719 aatcctaagagaaaatacaaaaggaagctttttgatcattccaatggtgaaatctcactacccaaggtgtttacaatgtttcccaacccaagagatcctc 3777818  T
Q  660 actacaaagacactcaac 677  Q
    ||||||||||||||||||    
T  3777819 actacaaagacactcaac 3777836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 561 - 642
Target Start/End: Original strand, 24333981 - 24334062
Alignment:
Q  561 aatcccaagaggaaacactaaagaaagctttttgatccttttaatggtgaaatctcactacttaaggtgattgcaatgtttc 642  Q
    ||||| ||||| |||||| |||| ||||||||||||||||  |||||||||||||||||||  |||||| || |||||||||    
T  24333981 aatcctaagagaaaacacaaaaggaagctttttgatccttccaatggtgaaatctcactacccaaggtgtttacaatgtttc 24334062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 561 - 641
Target Start/End: Complemental strand, 3794007 - 3793927
Alignment:
Q  561 aatcccaagaggaaacactaaagaaagctttttgatccttttaatggtgaaatctcactacttaaggtgattgcaatgttt 641  Q
    ||||| ||||| |||||| |||| |||||||||||||||||  ||||||||||||||||||  |||||| || ||||||||    
T  3794007 aatcctaagagcaaacacaaaaggaagctttttgatcctttctatggtgaaatctcactacccaaggtgtttacaatgttt 3793927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 556 - 677
Target Start/End: Original strand, 10047546 - 10047668
Alignment:
Q  556 taataaatcccaagaggaaacactaaagaaagctttttgatccttttaatggtgaaatctcactacttaaggtgattgcaatgtttcttagcccaa-tga 654  Q
    |||| ||||| ||||  |||||| |||| ||| ||||||||||||  |||||||||||||||||||  |||||| || |||||||||  | |||||  ||    
T  10047546 taatgaatcctaagacaaaacacaaaaggaagttttttgatccttccaatggtgaaatctcactacccaaggtgtttacaatgtttcccaacccaagaga 10047645  T
Q  655 acctcactacaaagacactcaac 677  Q
     ||||| ||||||||||||||||    
T  10047646 tcctcattacaaagacactcaac 10047668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 552 - 677
Target Start/End: Complemental strand, 42599510 - 42599384
Alignment:
Q  552 ctcttaataaatcccaagaggaaacactaaagaaagctttttgatccttttaatggtgaaatctcactacttaaggtgattgcaatgtttcttagcccaa 651  Q
    |||| ||| ||||| ||||| |||||| |||| ||| ||||| ||||||  |||||||||||||||||||  |||||| ||  ||||||||  | || ||    
T  42599510 ctctcaatgaatcctaagagaaaacacaaaaggaagtttttttatccttccaatggtgaaatctcactacccaaggtgtttagaatgtttcccaaccgaa 42599411  T
Q  652 -tgaacctcactacaaagacactcaac 677  Q
      |||||||||||||||||||||||||    
T  42599410 gagaacctcactacaaagacactcaac 42599384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 573 - 677
Target Start/End: Complemental strand, 16623207 - 16623103
Alignment:
Q  573 aaacactaaagaaagctttttgatccttttaatggtgaaatctcactacttaaggtgattgcaatgtttcttagcccaa-tgaacctcactacaaagaca 671  Q
    |||||| |||| |||||||| |||||||  |||||||||||||||||||  |||||| || |||||||||  | |||||  || ||||||||||||||||    
T  16623207 aaacacaaaaggaagctttt-gatccttccaatggtgaaatctcactacccaaggtgtttacaatgtttcccaacccaagagatcctcactacaaagaca 16623109  T
Q  672 ctcaac 677  Q
    ||||||    
T  16623108 ctcaac 16623103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 573 - 677
Target Start/End: Complemental strand, 16628786 - 16628682
Alignment:
Q  573 aaacactaaagaaagctttttgatccttttaatggtgaaatctcactacttaaggtgattgcaatgtttcttagcccaa-tgaacctcactacaaagaca 671  Q
    |||||| |||| |||||||| |||||||  |||||||||||||||||||  |||||| || |||||||||  | |||||  || ||||||||||||||||    
T  16628786 aaacacaaaaggaagctttt-gatccttccaatggtgaaatctcactacccaaggtgtttacaatgtttcccaacccaagagatcctcactacaaagaca 16628688  T
Q  672 ctcaac 677  Q
    ||||||    
T  16628687 ctcaac 16628682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 575 - 677
Target Start/End: Complemental strand, 5396583 - 5396481
Alignment:
Q  575 acactaaagaaagctttttgatccttttaatggtgaaatctcactacttaaggtgattgcaatgtttcttagcccaa-tgaacctcactacaaagacact 673  Q
    |||| ||||||||||||| ||| |||  |||||||||||||||||||  |||||| || |||||||||  | |||||  || ||||||||||||||||||    
T  5396583 acacaaaagaaagctttt-gattcttccaatggtgaaatctcactacccaaggtgtttacaatgtttcccaacccaagagatcctcactacaaagacact 5396485  T
Q  674 caac 677  Q
    ||||    
T  5396484 caac 5396481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 552 - 642
Target Start/End: Complemental strand, 39774241 - 39774151
Alignment:
Q  552 ctcttaataaatcccaagaggaaacactaaagaaagctttttgatccttttaatggtgaaatctcactacttaaggtgattgcaatgtttc 642  Q
    |||| ||| ||||||||||| ||| || |||| ||||||||||||| ||  |||||||||| ||||||||  |||||| || |||||||||    
T  39774241 ctctcaatgaatcccaagagaaaatacaaaaggaagctttttgatcattccaatggtgaaaactcactacccaaggtgtttacaatgtttc 39774151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 556 - 676
Target Start/End: Complemental strand, 6743346 - 6743226
Alignment:
Q  556 taataaatcccaagaggaaacactaaagaaagctttttgatccttttaatggtgaaatctcactacttaaggtgattgcaatgtttcttagcccaa-tga 654  Q
    |||| ||||| ||||| |||||| |||| ||| ||||||||||||  ||||||||||||||| |||  |||||| || |||||||||  | |||||  ||    
T  6743346 taatgaatcctaagagaaaacacaaaaggaag-tttttgatccttccaatggtgaaatctcattacccaaggtgtttacaatgtttcccaacccaagaga 6743248  T
Q  655 acctcactacaaagacactcaa 676  Q
     |||| ||||||||||||||||    
T  6743247 tcctcgctacaaagacactcaa 6743226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 580 - 621
Target Start/End: Original strand, 54867371 - 54867412
Alignment:
Q  580 aaagaaagctttttgatccttttaatggtgaaatctcactac 621  Q
    |||||||||||||||||||||  |||||||||||||||||||    
T  54867371 aaagaaagctttttgatccttccaatggtgaaatctcactac 54867412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 46; Significance: 8e-17; HSPs: 3)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 561 - 677
Target Start/End: Original strand, 5855 - 5972
Alignment:
Q  561 aatcccaagaggaaacactaaagaaagctttttgatccttttaatggtgaaatctcactacttaaggtgattgcaatgtttcttagcccaa-tgaacctc 659  Q
    ||||| ||||| |||||| |||| ||||||||||||||||  |||||||||||||||||||  |||||| || ||||||||   | |||||  || ||||    
T  5855 aatcctaagagaaaacacaaaaggaagctttttgatccttccaatggtgaaatctcactacccaaggtgtttacaatgtttgccaacccaagagatcctc 5954  T
Q  660 actacaaagacactcaac 677  Q
    ||||||||||||||||||    
T  5955 actacaaagacactcaac 5972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 573 - 642
Target Start/End: Original strand, 2676 - 2745
Alignment:
Q  573 aaacactaaagaaagctttttgatccttttaatggtgaaatctcactacttaaggtgattgcaatgtttc 642  Q
    |||||| |||| ||||||||||||||||  |||||||||||||||||||  |||||| || |||||||||    
T  2676 aaacacaaaaggaagctttttgatccttccaatggtgaaatctcactacgcaaggtgtttacaatgtttc 2745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 590 - 677
Target Start/End: Complemental strand, 133177 - 133089
Alignment:
Q  590 ttttgatccttttaatggtgaaatctcactacttaaggtgattgcaatgtttcttagcccaa-tgaacctcactacaaagacactcaac 677  Q
    |||||||||||  |||||||||||||||||||  |||||| || |||||||||  | |||||  || |||||||||||||| |||||||    
T  133177 ttttgatccttccaatggtgaaatctcactacccaaggtgtttacaatgtttcccaacccaagagatcctcactacaaagaaactcaac 133089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0148 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 585 - 677
Target Start/End: Original strand, 10925 - 11020
Alignment:
Q  585 aagctttttgatccttttaatggtgaaatctcactacttaaggtgattgcaatgtttcttagccc---aatgaacctcactacaaagacactcaac 677  Q
    ||||||||||||||||  |||||||||||||||||||  |||||| || |||||||||  | |||   |  |||||||||||||||||||||||||    
T  10925 aagctttttgatccttccaatggtgaaatctcactacccaaggtgtttacaatgtttcccaaccctcaagagaacctcactacaaagacactcaac 11020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0087 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0087
Description:

Target: scaffold0087; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 590 - 677
Target Start/End: Complemental strand, 43859 - 43771
Alignment:
Q  590 ttttgatccttttaatggtgaaatctcactacttaaggtgattgcaatgtttcttagccc-aatgaacctcactacaaagacactcaac 677  Q
    |||||||||||  |||||||||||||||||||  |||||| || |||||||||  | ||| || || ||||||||||||||||||||||    
T  43859 ttttgatccttccaatggtgaaatctcactacccaaggtgtttacaatgtttcccaacccaaaagatcctcactacaaagacactcaac 43771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 589 - 677
Target Start/End: Original strand, 85881 - 85970
Alignment:
Q  589 tttttgatccttttaatggtgaaatctcactacttaaggtgattgcaatgtttcttagcccaa-tgaacctcactacaaagacactcaac 677  Q
    ||||||||||||  |||||||||||||||||||  || ||| || |||||||||  | |||||  || ||||||||||||||||||||||    
T  85881 tttttgatccttccaatggtgaaatctcactacccaaagtgtttacaatgtttcccaacccaagagatcctcactacaaagacactcaac 85970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0140 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 590 - 677
Target Start/End: Complemental strand, 8315 - 8227
Alignment:
Q  590 ttttgatccttttaatggtgaaatctcactacttaaggtgattgcaatgtttcttagcccaa-tgaacctcactacaaagacactcaac 677  Q
    |||| ||||||  |||||||||||||||||||  |||||| || |||||||||  | |||||  || ||||||||||||||||||||||    
T  8315 ttttaatccttccaatggtgaaatctcactacccaaggtgtttacaatgtttcccaacccaagagatcctcactacaaagacactcaac 8227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 588 - 677
Target Start/End: Original strand, 23729 - 23819
Alignment:
Q  588 ctttttgatccttttaatggtgaaatctcactacttaaggtgattgcaatgtttcttagcccaat-gaacctcactacaaagacactcaac 677  Q
    |||||| |||||| ||||||||| ||||||||||  ||||||||| |||| |||   | |||||| ||||||||||| |||||| ||||||    
T  23729 cttttttatccttctaatggtgacatctcactacccaaggtgattacaattttttccaacccaatagaacctcactataaagacgctcaac 23819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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