View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6918_low_4 (Length: 711)
Name: NF6918_low_4
Description: NF6918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6918_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 470; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 470; E-Value: 0
Query Start/End: Original strand, 125 - 696
Target Start/End: Complemental strand, 55131112 - 55130537
Alignment:
| Q |
125 |
aaactcatgtcaaattttcccttcatatccatttctctcacatcacccccnnnnnnnnnnnnnnnnncaaattaaacatcctcacaactttaacaaannn |
224 |
Q |
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| T |
55131112 |
aaactcatgtcaaattttcccttcatatccatttctctcacatcaccccctatatatacatatatatcaaattaaacatcctcacaactttaacaaattt |
55131013 |
T |
|
| Q |
225 |
nnnnatcattcttc-ta---agttctaagagacatcatagaaaaataatctactgcttaattattgttgtgtgtaatcaagaaaatgggaaactgttgca |
320 |
Q |
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| T |
55131012 |
ttttatcattcttcatatccagttctaagagacatcatagaaaaataatctactgcttaattattgttgtgtgtaatcaagaaaatgggaaactgttgca |
55130913 |
T |
|
| Q |
321 |
aaccatcatcttcaatggagtgggttggggaggactgggaatctttgaggtctaaacctgaatcaaggaagacaaagccatatccatcatcaagcaaggt |
420 |
Q |
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| T |
55130912 |
aaccatcatcttcaatggagtgggttggggaggactgggaatctttgaggtctaaacctgaatcaaggaagacaaagccatatccatcatcaagcaaggt |
55130813 |
T |
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| Q |
421 |
gtttgatgaagctagtcttgatcatcaccagaaggagaatgatgtattaggaaagcttagagcttcttgtgatgcaagtgggaaggtgacgttgaagatt |
520 |
Q |
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| T |
55130812 |
gtttgatgaagctagtcttgatcatcaccagaaggagaatgatgtattaggaaagcttagagcttcttgtgatgcaagtgggaaggtgacgttgaagatt |
55130713 |
T |
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| Q |
521 |
tcaaagagcgaactcgctgaattattgggagcgatacaacagaataatattaatagtagtaatcaacagccaaagcaggagatgaagaagaaaaaggaat |
620 |
Q |
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| T |
55130712 |
tcaaagagcgaactcgctgaattattgggagcgatacaacagaataatattaatagtagtaatcaacagccaaagcagcagatgaagaagaaaaaggaat |
55130613 |
T |
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| Q |
621 |
tagcttctgcagaagaagttctatttaggttaatgaaagctaaagaccatgagcatcactggaaaccagttctaga |
696 |
Q |
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| T |
55130612 |
tagcttctgcagaagaagttctatttaggctaatgaaagccaaagaccatgagcatcactggaaaccagttctaga |
55130537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 405 - 552
Target Start/End: Complemental strand, 55126015 - 55125868
Alignment:
| Q |
405 |
catcatcaagcaaggtgtttgatgaagctagtcttgatcatcaccagaaggagaatgatgtattaggaaagcttagagcttcttgtgatgcaagtgggaa |
504 |
Q |
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| T |
55126015 |
catcatcaagtaaggtgtttgatgaagctcatcttgatcatcctcagaaagagaatgatctattagaaaggcttagagcttctggagatgcaagtgggaa |
55125916 |
T |
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| Q |
505 |
ggtgacgttgaagatttcaaagagcgaactcgctgaattattgggagc |
552 |
Q |
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| T |
55125915 |
ggtaacattaaagatttcaaagtcagagctggctgaattattgggagc |
55125868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 17 - 71
Target Start/End: Complemental strand, 55131224 - 55131170
Alignment:
| Q |
17 |
acatcagatgatatgagatgagacccaatctatttgccgtcacaagagagcgagg |
71 |
Q |
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| T |
55131224 |
acatcagatgatatgagatgagacccaatctatttgccgtcacaagagagcgagg |
55131170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 291 - 372
Target Start/End: Complemental strand, 55126120 - 55126039
Alignment:
| Q |
291 |
gtgtaatcaagaaaatgggaaactgttgcaaaccatcatcttcaatggagtgggttggggaggactgggaatctttgaggtc |
372 |
Q |
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|||||||||||||||||||||||||||||| || || |||||||||||| | ||| || ||||||| |||||||| ||| |
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| T |
55126120 |
gtgtaatcaagaaaatgggaaactgttgcagggcagcaccttcaatggagtttggtggagaagactggggatctttgaagtc |
55126039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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