View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6919_low_1 (Length: 387)
Name: NF6919_low_1
Description: NF6919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6919_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 209; Significance: 1e-114; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 371
Target Start/End: Original strand, 34871559 - 34871918
Alignment:
| Q |
1 |
cttttcaaataatccgcatgaatagttctacccaagtaaggtgaaatggccgttttatgtttttgtttgttcaaacacactaaccaaacctcacaataaa |
100 |
Q |
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| T |
34871559 |
cttttcagataatctgcatgaatagttctacccaagtaaggtgaaatggccgttttatgtttttgtttgttcaaacacactaaacaaacat--------- |
34871649 |
T |
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| Q |
101 |
taaaccttctaccaacaccaaagaaacctttcacgaaaaccataaactaacaatttcaacnnnnnnnn---tcatcattcaacaatgtacaagaacaa-- |
195 |
Q |
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| T |
34871650 |
-------tctaccaacaccaaagaaacctttcaccaaaaccataaactaacaatttcaacaaaaaaaaacatcatcattcaacaatgtacaagaacaaaa |
34871742 |
T |
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| Q |
196 |
gtttcaagaactatgtcnnnnnnnctcataccctcttcccaaataccaaacaacccatgaaggaccactgcacaatcctcttttctcatcaaccgttacc |
295 |
Q |
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| T |
34871743 |
gcttcaagaactatgtcaaaaaaactcttacccacttcccaaataccaaacaacccatgaaggaccactgcacaatcctcttttttcatcaaccgttacc |
34871842 |
T |
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| Q |
296 |
gttaagtctatttccttcacttcaccagaactagcaagcacccttaaggcatctcaagagtttgctgcgatggttg |
371 |
Q |
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| T |
34871843 |
gttaagtctatttccttcacttcaccaaaaccagcaagcacccttaaggcatctcaagagtttgctgcgatggttg |
34871918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 156; E-Value: 9e-83
Query Start/End: Original strand, 136 - 371
Target Start/End: Complemental strand, 34873942 - 34873706
Alignment:
| Q |
136 |
aaaaccataaactaacaatttcaacnnnnnnnn-tcatcattcaacaatgtacaagaacaagtttcaagaactatgtcnnnnnnnctcataccctcttcc |
234 |
Q |
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| T |
34873942 |
aaaaccataaactaacaatttcaacaaaaaaacatcatcattcaacaatgtacacgaacaagcttcaagaactatgtcaaaaaaactcataccctcttcc |
34873843 |
T |
|
| Q |
235 |
caaataccaaacaacccatgaaggaccactgcacaatcctcttttctcatcaaccgttaccgttaagtctatttccttcacttcaccagaactagcaagc |
334 |
Q |
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| T |
34873842 |
cgaataccaaacaacccatgaaggaccactgcacaatcctcttttctcatcaaccgttaccgttaagtccatttccttcacttcaccagaacctgcaagc |
34873743 |
T |
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| Q |
335 |
acccttaaggcatctcaagagtttgctgcgatggttg |
371 |
Q |
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| T |
34873742 |
acccttaaggcatctcaagagtttgttgcgatggttg |
34873706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 34874121 - 34873988
Alignment:
| Q |
1 |
cttttcaaataatccgcatgaatagttctacccaagtaaggtgaaatggccgttttatgtttttgtttgttcaaacacactaaccaaacctcacaataaa |
100 |
Q |
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||||||| ||||||| |||||| ||||||||||||||||||| ||||| |||||||||| ||||||||||||||||||||||| |||||||||||||||| |
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| T |
34874121 |
cttttcagataatccacatgaagagttctacccaagtaaggtaaaatgtccgttttatgcttttgtttgttcaaacacactaaacaaacctcacaataaa |
34874022 |
T |
|
| Q |
101 |
taaaccttctaccaacaccaaagaaacctttcac |
134 |
Q |
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| T |
34874021 |
caaaccttctactaacaccaaagaaacctttcac |
34873988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 173 - 371
Target Start/End: Original strand, 9911036 - 9911234
Alignment:
| Q |
173 |
cattcaacaatgtacaagaacaagtttcaagaactatgtcnnnnnnnctcataccctcttcccaaataccaaacaacccatgaaggaccactgcacaatc |
272 |
Q |
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||||||||||||||||||| |||| ||||||||||||||| ||||||||||||||| ||||||||||||||| ||||||||||| |||||| |
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| T |
9911036 |
cattcaacaatgtacaagaccaagcttcaagaactatgtcaaaaaaattcataccctcttcccgaataccaaacaacccgtgaaggaccaccacacaatt |
9911135 |
T |
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| Q |
273 |
ctcttttctcatcaaccgttaccgttaagtctatttccttcacttcaccagaactagcaagcacccttaaggcatctcaagagtttgctgcgatggttg |
371 |
Q |
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||| ||||||| |||||||||| ||||| || ||||||||| |||| || |||| |||| ||||| ||||| |||||||| | |||||| ||||||| |
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| T |
9911136 |
ctcgtttctcaacaaccgttactgttaactccatttccttctcttctcctgaaccagcacgcaccattaagctgtctcaagattctgctgccatggttg |
9911234 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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