View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6920_high_1 (Length: 515)
Name: NF6920_high_1
Description: NF6920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6920_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 476; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 476; E-Value: 0
Query Start/End: Original strand, 1 - 504
Target Start/End: Complemental strand, 37983564 - 37983062
Alignment:
| Q |
1 |
cctggtgaaagtcctattttgaggattattcaggtcagtaattaattattctttaatcattttaactagtgcattgattaattattaaaccattattgtt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| |
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| T |
37983564 |
cctggtgaaagtcctattttgaggattattcaggtcagtaattaattattctttaatcattttaactagttcattgattaattattaaaccattaatgtt |
37983465 |
T |
|
| Q |
101 |
tgatgcaggttattgttgtggcttttaagaatagaaagctacaactgccagaatctaacgaacaactttatgaagtgtataaagatgctactatagagaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
37983464 |
tgatgcaggttattgttgtggcttttaagaatagaaagctacaactgccagaatctaatgaacaactttatgaagtgtataaagatgctactatagagaa |
37983365 |
T |
|
| Q |
201 |
gattgtacacactaaccaaatgaggttatttcattttcttctacatattcaccatgcttaattaacattttgtgataatgtgttggactaagttaggcta |
300 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37983364 |
gattgtacacactaaccaaatgaggttatttcattt-cttctacatattcataatgcttaattaacattttgtgataatgtgttggactaagttaggcta |
37983266 |
T |
|
| Q |
301 |
ataatgttgatatgcatgatgacaattatgaattacattgtgtccagcacattgttaagattctttttcttcaagtacgactaattaagtaatgccaaga |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37983265 |
ataatgttgatatgcatgatgacaattatgaattacattgtgtccagcacattgttaagattctttttcttcaagtacgactaattaagtaatgccaaga |
37983166 |
T |
|
| Q |
401 |
atttgggcctactatcactcacttctacacgttcggtgtagcagacttacagagaatgatcatggaaaatatgtcctctcttttgctttttagttaacac |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37983165 |
atttgggcctactatcactcacttctacacgttcggtgtagcagacttacagagaatgatcatggaaaatatgtcctctcttttgctttttagttaacac |
37983066 |
T |
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| Q |
501 |
caaa |
504 |
Q |
| |
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|||| |
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| T |
37983065 |
caaa |
37983062 |
T |
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