View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6920_high_2 (Length: 452)
Name: NF6920_high_2
Description: NF6920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6920_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 276 - 325
Target Start/End: Complemental strand, 5244480 - 5244431
Alignment:
| Q |
276 |
aaacatacataaagacaaaacctcctagccatttattacaaaaaactgaa |
325 |
Q |
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| T |
5244480 |
aaacatacataaagacaaaacctcctagccatttattacaaaaaactgaa |
5244431 |
T |
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Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 384 - 438
Target Start/End: Complemental strand, 5244393 - 5244339
Alignment:
| Q |
384 |
accaatattcctacgacaatctagttttgagacattgaagtctgctgacataaga |
438 |
Q |
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| T |
5244393 |
accaatattcctacgacaatctagttttgagacattgaagtttgctagcataaga |
5244339 |
T |
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Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 19 - 127
Target Start/End: Complemental strand, 31824534 - 31824435
Alignment:
| Q |
19 |
tgcatagcttggattttgtgagaccacataaaccgtggatcgtagttcagcaaagggtgaagcattactataataatgcgttgcataataataagctgca |
118 |
Q |
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| T |
31824534 |
tgcatagtttggattttgtgagacctcacaaaccgtggattgtagttcagcaaag---------tcattatgatattgcgttgcataataataagctgca |
31824444 |
T |
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