View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6920_low_10 (Length: 241)
Name: NF6920_low_10
Description: NF6920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6920_low_10 |
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| [»] chr8 (6 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 214; Significance: 1e-117; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 20 - 241
Target Start/End: Original strand, 2497428 - 2497648
Alignment:
| Q |
20 |
tacaaataaggaacacgttatcttacgattttctccttcactagggtttaaaccctggtcctttataactccttcgactcatttaacctttatctcaaac |
119 |
Q |
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| T |
2497428 |
tacaaataaggaacacgttatcttacgattttctccttcactagggtttaaacc-tggtcctttataactccttcgactcatttaacctttatctcaaac |
2497526 |
T |
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| Q |
120 |
tagctcaactacccaatcccctaggtgacggtgacatactaaggaacataaaacttaagcaattacaataataccttctctttacttccagcacttccta |
219 |
Q |
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| T |
2497527 |
tagctcaactacccaatcccctaggtgacggtgacatactaaggaacataaaacttaagcaattacaataataccttctctttacttccagcacttccta |
2497626 |
T |
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| Q |
220 |
caacataacatcctgtcagttt |
241 |
Q |
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|||||||||||||||||||||| |
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| T |
2497627 |
caacataacatcctgtcagttt |
2497648 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 189 - 226
Target Start/End: Original strand, 2517296 - 2517333
Alignment:
| Q |
189 |
aataccttctctttacttccagcacttcctacaacata |
226 |
Q |
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| T |
2517296 |
aataccttctctttacttccagcacttccaacaacata |
2517333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 189 - 226
Target Start/End: Complemental strand, 1459147 - 1459110
Alignment:
| Q |
189 |
aataccttctctttacttccagcacttcctacaacata |
226 |
Q |
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| T |
1459147 |
aataccttctctttacttccagcacttccaacgacata |
1459110 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 189 - 226
Target Start/End: Complemental strand, 2428854 - 2428817
Alignment:
| Q |
189 |
aataccttctctttacttccagcacttcctacaacata |
226 |
Q |
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| T |
2428854 |
aataccttctctttacttccagcacttccaacgacata |
2428817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 189 - 226
Target Start/End: Original strand, 2512936 - 2512973
Alignment:
| Q |
189 |
aataccttctctttacttccagcacttcctacaacata |
226 |
Q |
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||||||||||||||||||||||||||||| || ||||| |
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| T |
2512936 |
aataccttctctttacttccagcacttccaacgacata |
2512973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 229
Target Start/End: Complemental strand, 2431831 - 2431791
Alignment:
| Q |
189 |
aataccttctctttacttccagcacttcctacaacataaca |
229 |
Q |
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|||||||| |||||| ||||||||||||| ||||||||||| |
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| T |
2431831 |
aataccttttctttagttccagcacttccaacaacataaca |
2431791 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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