View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6920_low_11 (Length: 235)

Name: NF6920_low_11
Description: NF6920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6920_low_11
NF6920_low_11
[»] chr5 (9 HSPs)
chr5 (13-235)||(6665902-6666123)
chr5 (36-235)||(32659114-32659314)
chr5 (128-235)||(8871474-8871581)
chr5 (128-235)||(13854433-13854540)
chr5 (13-99)||(8871585-8871671)
chr5 (13-91)||(13854344-13854422)
chr5 (160-235)||(36606405-36606480)
chr5 (13-99)||(36606479-36606568)
chr5 (174-235)||(30131310-30131371)
[»] chr8 (18 HSPs)
chr8 (13-235)||(3046420-3046644)
chr8 (13-99)||(10861458-10861544)
chr8 (13-99)||(17068516-17068602)
chr8 (13-99)||(17579671-17579757)
chr8 (123-235)||(20289570-20289682)
chr8 (123-235)||(21076200-21076312)
chr8 (128-235)||(17068405-17068512)
chr8 (128-235)||(17579761-17579868)
chr8 (128-235)||(29054791-29054900)
chr8 (13-99)||(29054904-29054992)
chr8 (13-99)||(34964397-34964485)
chr8 (139-235)||(17630914-17631010)
chr8 (152-235)||(10861549-10861632)
chr8 (13-98)||(20289682-20289766)
chr8 (13-98)||(21076312-21076396)
chr8 (139-235)||(34964500-34964596)
chr8 (13-99)||(17630811-17630899)
chr8 (45-78)||(44718251-44718284)
[»] chr3 (20 HSPs)
chr3 (13-235)||(22976409-22976629)
chr3 (128-235)||(42864500-42864607)
chr3 (13-99)||(39580234-39580320)
chr3 (13-99)||(25041680-25041765)
chr3 (13-99)||(21869195-21869281)
chr3 (128-235)||(959065-959172)
chr3 (128-235)||(53330430-53330537)
chr3 (128-235)||(53334114-53334221)
chr3 (128-235)||(53337791-53337898)
chr3 (128-231)||(4533704-4533807)
chr3 (128-235)||(39580123-39580230)
chr3 (128-235)||(25041569-25041676)
chr3 (128-235)||(39674409-39674514)
chr3 (13-99)||(4533811-4533902)
chr3 (13-162)||(29360010-29360159)
chr3 (38-99)||(959176-959237)
chr3 (33-81)||(41530359-41530407)
chr3 (19-66)||(42864640-42864687)
chr3 (13-67)||(39674531-39674584)
chr3 (184-235)||(29359961-29360011)
[»] chr1 (4 HSPs)
chr1 (13-235)||(33369007-33369224)
chr1 (21-98)||(46397756-46397832)
chr1 (123-235)||(46397832-46397942)
chr1 (169-235)||(23206064-23206130)
[»] chr7 (17 HSPs)
chr7 (14-235)||(22293069-22293286)
chr7 (65-235)||(45280978-45281149)
chr7 (13-235)||(22204974-22205179)
chr7 (13-235)||(22229560-22229765)
chr7 (149-235)||(30947790-30947876)
chr7 (13-97)||(30947902-30947986)
chr7 (128-235)||(19927994-19928101)
chr7 (13-99)||(19927905-19927990)
chr7 (13-99)||(26279596-26279681)
chr7 (13-99)||(40819581-40819667)
chr7 (128-225)||(40819671-40819768)
chr7 (33-96)||(25443942-25444005)
chr7 (128-224)||(26279685-26279781)
chr7 (128-228)||(25443835-25443935)
chr7 (195-235)||(37243006-37243046)
chr7 (44-82)||(45281169-45281207)
chr7 (45-98)||(26244664-26244717)
[»] chr2 (8 HSPs)
chr2 (13-98)||(14811618-14811703)
chr2 (13-99)||(14314036-14314124)
chr2 (128-235)||(14811506-14811613)
chr2 (128-235)||(14314127-14314241)
chr2 (168-233)||(29081148-29081213)
chr2 (33-98)||(13043498-13043563)
chr2 (117-169)||(13043614-13043666)
chr2 (168-235)||(13043716-13043783)
[»] chr6 (5 HSPs)
chr6 (128-235)||(21112318-21112425)
chr6 (128-235)||(8862260-8862367)
chr6 (13-99)||(8862371-8862458)
chr6 (13-99)||(21112429-21112520)
chr6 (117-162)||(9150003-9150048)
[»] scaffold0017 (2 HSPs)
scaffold0017 (13-99)||(37701-37787)
scaffold0017 (128-235)||(37791-37898)
[»] chr4 (5 HSPs)
chr4 (128-235)||(54260355-54260462)
chr4 (24-99)||(54260466-54260540)
chr4 (169-234)||(26261264-26261329)
chr4 (13-75)||(26261550-26261611)
chr4 (13-82)||(51161448-51161515)


Alignment Details
Target: chr5 (Bit Score: 170; Significance: 2e-91; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 13 - 235
Target Start/End: Complemental strand, 6666123 - 6665902
Alignment:
Q  13 acatcataagtactataaagaaaagaacatctttgtctaatgttgactacttaatagttaacactaatttatgtcgaaaacaaacagnnnnnnncccaat 112  Q
    ||||||||||||||||| | |||| || | ||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||       ||||||    
T  6666123 acatcataagtactatataaaaaaaaa-acctttgtctaatgttgactacttactagttaacactaatttatatcgaaaacaaacagtttttttcccaat 6666025  T
Q  113 tagtgagaagaacataagaaacatggcattagagcaaagagaaacatagtagaattcaattggtggtaatggttagaagagggaatagttatcgctatgt 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6666024 tagtgagaagaacataagaaacatggcattagagcaaagagaaacatagtagaattcaattggtggtaatggttagaagagggaatagttatcgctatgt 6665925  T
Q  213 ggtgacgagaaaccctatttttt 235  Q
    |||||||||||||||||||||||    
T  6665924 ggtgacgagaaaccctatttttt 6665902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 36 - 235
Target Start/End: Complemental strand, 32659314 - 32659114
Alignment:
Q  36 agaacatctttgtctaatgttgactacttaatagttaacactaatttatgtcgaaaa--caaacagnnnnnnncccaattagtgagaagaacataagaaa 133  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||  |  ||||  |||||||       ||||||||| |||||||||| ||||||    
T  32659314 agaacacctttgtctaatgttgactacttaatagttaacactaatttagataaaaaaaacaaacagcttttt-cccaattagagagaagaacagaagaaa 32659216  T
Q  134 catggcattagagcaaagagaaacatagtagaattcaattggtggtaatggttagaagagggaatagttatcgctatgtggtgacgagaaaccctatttt 233  Q
    |||  ||||||||  | ||||||| ||||||||||||||     ||||||| ||||||| ||||||| ||||||||||||||||||||||||||||| ||    
T  32659215 cataacattagagggaggagaaacttagtagaattcaatcataagtaatgggtagaagatggaatagctatcgctatgtggtgacgagaaaccctatatt 32659116  T
Q  234 tt 235  Q
    ||    
T  32659115 tt 32659114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 128 - 235
Target Start/End: Complemental strand, 8871581 - 8871474
Alignment:
Q  128 aagaaacatggcattagagcaaagagaaacatagtagaattcaattggtggtaatggttagaagagggaatagttatcgctatgtggtgacgagaaaccc 227  Q
    |||||||||  ||||||||  ||||||||||||||||||||||||| ||||||||||||||||||| |||||| ||| ||||||||||||||||||||||    
T  8871581 aagaaacataacattagagagaagagaaacatagtagaattcaattagtggtaatggttagaagagagaatagctattgctatgtggtgacgagaaaccc 8871482  T
Q  228 tatttttt 235  Q
    ||||||||    
T  8871481 tatttttt 8871474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 128 - 235
Target Start/End: Original strand, 13854433 - 13854540
Alignment:
Q  128 aagaaacatggcattagagcaaagagaaacatagtagaattcaattggtggtaatggttagaagagggaatagttatcgctatgtggtgacgagaaaccc 227  Q
    |||||||||  ||||||||  |||||||||| |||||||||||||  |||||||||||||||||||  ||||||||| ||||||||||||||||||||||    
T  13854433 aagaaacataacattagagagaagagaaacagagtagaattcaatcagtggtaatggttagaagagataatagttattgctatgtggtgacgagaaaccc 13854532  T
Q  228 tatttttt 235  Q
    ||||||||    
T  13854533 tatttttt 13854540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 13 - 99
Target Start/End: Complemental strand, 8871671 - 8871585
Alignment:
Q  13 acatcataagtactataaagaaaagaacatctttgtctaatgttgactacttaatagttaacactaatttatgtcgaaaacaaacag 99  Q
    |||||||||||||| |||| |||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||    
T  8871671 acatcataagtactgtaaaaaaaagaacatttttgtctaatgttgactacttaacagttaacactaatttatatcgaaaacaaacag 8871585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 13 - 91
Target Start/End: Original strand, 13854344 - 13854422
Alignment:
Q  13 acatcataagtactataaagaaaagaacatctttgtctaatgttgactacttaatagttaacactaatttatgtcgaaa 91  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||    
T  13854344 acatcataagtactataaaaaaaagaacatctttgtctaatgttgactacttaacagttaacactaatttatatcgaaa 13854422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 160 - 235
Target Start/End: Complemental strand, 36606480 - 36606405
Alignment:
Q  160 agtagaattcaattggtggtaatggttagaagagggaatagttatcgctatgtggtgacgagaaaccctatttttt 235  Q
    |||||||||||||  ||| ||||||||||||||| |||||| ||| ||||||||||||||||||||||||||||||    
T  36606480 agtagaattcaatcagtgataatggttagaagagagaatagctattgctatgtggtgacgagaaaccctatttttt 36606405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 13 - 99
Target Start/End: Complemental strand, 36606568 - 36606479
Alignment:
Q  13 acatcataagtactataaagaaaa---gaacatctttgtctaatgttgactacttaatagttaacactaatttatgtcgaaaacaaacag 99  Q
    ||||||||||||||||||| ||||   |||||||||||||||||||||||||||||| |||||| |||||||||| |  |||||||||||    
T  36606568 acatcataagtactataaaaaaaaaaagaacatctttgtctaatgttgactacttaacagttaatactaatttatattaaaaacaaacag 36606479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 174 - 235
Target Start/End: Original strand, 30131310 - 30131371
Alignment:
Q  174 ggtggtaatggttagaagagggaatagttatcgctatgtggtgacgagaaaccctatttttt 235  Q
    |||||||||| || |||||||||||| |||||  |  |||||||||||||||||||||||||    
T  30131310 ggtggtaatgattcgaagagggaataattatcaatcggtggtgacgagaaaccctatttttt 30131371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 145; Significance: 2e-76; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 13 - 235
Target Start/End: Original strand, 3046420 - 3046644
Alignment:
Q  13 acatcataagtactataaagaaaaga--acatctttgtctaatgttgactacttaatagttaacactaatttatgtcgaaaacaaacagnnnnnnnccca 110  Q
    ||||||||||||||||||| |||| |  ||| |||||||||||||||||||||||||| ||||||||||||||| || ||||||||||        ||||    
T  3046420 acatcataagtactataaaaaaaaaataacacctttgtctaatgttgactacttaatatttaacactaatttatatcaaaaacaaacaatttttttccca 3046519  T
Q  111 attagtgagaagaacataagaaacatggcattagagcaaagagaaacatagtagaattcaattggtggtaatggttagaagagggaatagttatcgctat 210  Q
    ||| | |||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  3046520 atttgagagaagaaccaaagaaacatggcattagagcaaagagaaacatagtagaattcaattggtggtaatggttagaagagggaatagttatcgttat 3046619  T
Q  211 gtggtgacgagaaaccctatttttt 235  Q
    |||||||||||||||||||||||||    
T  3046620 gtggtgacgagaaaccctatttttt 3046644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 13 - 99
Target Start/End: Original strand, 10861458 - 10861544
Alignment:
Q  13 acatcataagtactataaagaaaagaacatctttgtctaatgttgactacttaatagttaacactaatttatgtcgaaaacaaacag 99  Q
    ||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  10861458 acatcataagtactataagaaaaagaacatctttgtctaatgttgactacttaatagttaacactaatttatatcgaaaacaaacag 10861544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 13 - 99
Target Start/End: Complemental strand, 17068602 - 17068516
Alignment:
Q  13 acatcataagtactataaagaaaagaacatctttgtctaatgttgactacttaatagttaacactaatttatgtcgaaaacaaacag 99  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||    
T  17068602 acatcataagtactataaaaaaaagaacatctttgtctaatgttgactacttaacagttaacactaatttatatcgaaaacaaacag 17068516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 13 - 99
Target Start/End: Original strand, 17579671 - 17579757
Alignment:
Q  13 acatcataagtactataaagaaaagaacatctttgtctaatgttgactacttaatagttaacactaatttatgtcgaaaacaaacag 99  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||    
T  17579671 acatcataagtactataaaaaaaagaacatctttgtctaatgttgactacttaacagttaacactaatttatatcgaaaacaaacag 17579757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 123 - 235
Target Start/End: Complemental strand, 20289682 - 20289570
Alignment:
Q  123 aacataagaaacatggcattagagcaaagagaaacatagtagaattcaattggtggtaatggttagaagagggaatagttatcgctatgtggtgacgaga 222  Q
    ||||||||||||||  ||||||||  |||||||||| |||||||||||||| ||| ||||||||||||||| |||||| ||| |||||||||||||||||    
T  20289682 aacataagaaacataacattagagagaagagaaacagagtagaattcaattagtgttaatggttagaagagagaatagctattgctatgtggtgacgaga 20289583  T
Q  223 aaccctatttttt 235  Q
    |||||||||||||    
T  20289582 aaccctatttttt 20289570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 123 - 235
Target Start/End: Complemental strand, 21076312 - 21076200
Alignment:
Q  123 aacataagaaacatggcattagagcaaagagaaacatagtagaattcaattggtggtaatggttagaagagggaatagttatcgctatgtggtgacgaga 222  Q
    ||||||||||||||  ||||||||  |||||||||| |||||||||||||  ||||||||||||||||||| |||||| ||| |||||||||||||||||    
T  21076312 aacataagaaacataacattagagagaagagaaacagagtagaattcaatcagtggtaatggttagaagagagaatagctattgctatgtggtgacgaga 21076213  T
Q  223 aaccctatttttt 235  Q
    |||||||||||||    
T  21076212 aaccctatttttt 21076200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 128 - 235
Target Start/End: Complemental strand, 17068512 - 17068405
Alignment:
Q  128 aagaaacatggcattagagcaaagagaaacatagtagaattcaattggtggtaatggttagaagagggaatagttatcgctatgtggtgacgagaaaccc 227  Q
    |||||||||  ||||||||  |||||||||| |||| ||||||||  ||||||||||||||||||| |||||| ||| ||||||||||||||||||||||    
T  17068512 aagaaacataacattagagagaagagaaacagagtaaaattcaatcagtggtaatggttagaagagagaatagctattgctatgtggtgacgagaaaccc 17068413  T
Q  228 tatttttt 235  Q
    ||||||||    
T  17068412 tatttttt 17068405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 128 - 235
Target Start/End: Original strand, 17579761 - 17579868
Alignment:
Q  128 aagaaacatggcattagagcaaagagaaacatagtagaattcaattggtggtaatggttagaagagggaatagttatcgctatgtggtgacgagaaaccc 227  Q
    |||||||||  ||||||||  |||||||||| |||| ||||||||  ||||||||||||||||||| |||||| ||| ||||||||||||||||||||||    
T  17579761 aagaaacataacattagagagaagagaaacagagtaaaattcaatcagtggtaatggttagaagagagaatagctattgctatgtggtgacgagaaaccc 17579860  T
Q  228 tatttttt 235  Q
    ||||||||    
T  17579861 tatttttt 17579868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 128 - 235
Target Start/End: Complemental strand, 29054900 - 29054791
Alignment:
Q  128 aagaaacatggcattagagcaaagagaaacatagtagaattcaattggtggtaatggttagaagagggaatagtta--tcgctatgtggtgacgagaaac 225  Q
    |||||||||  ||||||||  ||||||||||||||||||||||||  ||||||||||||||||||| |||||| ||  | ||||||||||||||||||||    
T  29054900 aagaaacataacattagagagaagagaaacatagtagaattcaatcagtggtaatggttagaagagagaatagctattttgctatgtggtgacgagaaac 29054801  T
Q  226 cctatttttt 235  Q
    ||||||||||    
T  29054800 cctatttttt 29054791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 13 - 99
Target Start/End: Complemental strand, 29054992 - 29054904
Alignment:
Q  13 acatcataagtactataaagaaaa--gaacatctttgtctaatgttgactacttaatagttaacactaatttatgtcgaaaacaaacag 99  Q
    ||||||||||||||||||| ||||  ||||||||||||||||||||||||||||||  |||||||||||||||| ||||||||||||||    
T  29054992 acatcataagtactataaaaaaaaaagaacatctttgtctaatgttgactacttaaccgttaacactaatttatatcgaaaacaaacag 29054904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 13 - 99
Target Start/End: Original strand, 34964397 - 34964485
Alignment:
Q  13 acatcataagtacta--taaagaaaagaacatctttgtctaatgttgactacttaatagttaacactaatttatgtcgaaaacaaacag 99  Q
    |||||||||||||||  |||| |||||||||||||||||||||||||||||||||| ||||||||||||||||  ||||||||||||||    
T  34964397 acatcataagtactacataaaaaaaagaacatctttgtctaatgttgactacttaacagttaacactaatttacatcgaaaacaaacag 34964485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 139 - 235
Target Start/End: Original strand, 17630914 - 17631010
Alignment:
Q  139 cattagagcaaagagaaacatagtagaattcaattggtggtaatggttagaagagggaatagttatcgctatgtggtgacgagaaaccctatttttt 235  Q
    ||||||||  |||||||||| |||||||||||||  ||||||||||||||||||| |||||| ||| ||||| ||||||||||||||||||||||||    
T  17630914 cattagagagaagagaaacagagtagaattcaatcagtggtaatggttagaagagagaatagctattgctatttggtgacgagaaaccctatttttt 17631010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 152 - 235
Target Start/End: Original strand, 10861549 - 10861632
Alignment:
Q  152 agaaacatagtagaattcaattggtggtaatggttagaagagggaatagttatcgctatgtggtgacgagaaaccctatttttt 235  Q
    |||||||||||||||||||||  ||||||||||||||||||| |||||| ||| ||||||||||||||||||||||||| ||||    
T  10861549 agaaacatagtagaattcaatcagtggtaatggttagaagagagaatagctattgctatgtggtgacgagaaaccctatatttt 10861632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 13 - 98
Target Start/End: Complemental strand, 20289766 - 20289682
Alignment:
Q  13 acatcataagtactataaagaaaagaacatctttgtctaatgttgactacttaatagttaacactaatttatgtcgaaaacaaaca 98  Q
    ||||||||||||||||||| |||||||||||||||||||||||| | |||||||  |||||||||||||||| |||||||||||||    
T  20289766 acatcataagtactataaa-aaaagaacatctttgtctaatgttaattacttaacggttaacactaatttatatcgaaaacaaaca 20289682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 13 - 98
Target Start/End: Complemental strand, 21076396 - 21076312
Alignment:
Q  13 acatcataagtactataaagaaaagaacatctttgtctaatgttgactacttaatagttaacactaatttatgtcgaaaacaaaca 98  Q
    ||||||||||||||||||| |||||||||||||||||||||||| | |||||||  |||||||||||||||| |||||||||||||    
T  21076396 acatcataagtactataaa-aaaagaacatctttgtctaatgttaattacttaacggttaacactaatttatatcgaaaacaaaca 21076312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 139 - 235
Target Start/End: Original strand, 34964500 - 34964596
Alignment:
Q  139 cattagagcaaagagaaacatagtagaattcaattggtggtaatggttagaagagggaatagttatcgctatgtggtgacgagaaaccctatttttt 235  Q
    ||||||||  ||||||||||||||||||||||||    ||||||||||||||||| |||||| ||| |||||| |||||||||||||||||||||||    
T  34964500 cattagagagaagagaaacatagtagaattcaatcaaaggtaatggttagaagagagaatagctattgctatgcggtgacgagaaaccctatttttt 34964596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 13 - 99
Target Start/End: Original strand, 17630811 - 17630899
Alignment:
Q  13 acatcataagtactataaagaaaa--gaacatctttgtctaatgttgactacttaatagttaacactaatttatgtcgaaaacaaacag 99  Q
    ||||| ||||||||||||| ||||  |||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||    
T  17630811 acatcgtaagtactataaaaaaaaaagaacatatttgtctaatgttgactacttaacagttaacactaatttatatcgaaaactaacag 17630899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 45 - 78
Target Start/End: Original strand, 44718251 - 44718284
Alignment:
Q  45 ttgtctaatgttgactacttaatagttaacacta 78  Q
    ||||||||||||||||||||||||||||||||||    
T  44718251 ttgtctaatgttgactacttaatagttaacacta 44718284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 143; Significance: 3e-75; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 13 - 235
Target Start/End: Original strand, 22976409 - 22976629
Alignment:
Q  13 acatcataagtactataaagaaaagaacatctttgtctaatgttgactacttaatagttaacactaatttatgtcgaaaacaaacagnnnnnnncccaat 112  Q
    ||||||||||||||||||| ||||  ||| |||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||       ||||||    
T  22976409 acatcataagtactataaaaaaaa--acacctttgtctaatgttgactacttaatagttaacactaatttatatcgaaaataaacagtttttttcccaat 22976506  T
Q  113 tagtgagaagaacataagaaacatggcattagagcaaagagaaacatagtagaattcaattggtggtaatggttagaagagggaatagttatcgctatgt 212  Q
    ||| |||||||||| |||||||||||||||||||  || ||||||||||||||||||||| ||||||||||||||||||||| ||||| |||||||||||    
T  22976507 tagagagaagaacagaagaaacatggcattagagagaaaagaaacatagtagaattcaatcggtggtaatggttagaagaggaaatagctatcgctatgt 22976606  T
Q  213 ggtgacgagaaaccctatttttt 235  Q
    |||||||||||||||||||||||    
T  22976607 ggtgacgagaaaccctatttttt 22976629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 128 - 235
Target Start/End: Complemental strand, 42864607 - 42864500
Alignment:
Q  128 aagaaacatggcattagagcaaagagaaacatagtagaattcaattggtggtaatggttagaagagggaatagttatcgctatgtggtgacgagaaaccc 227  Q
    |||||||||  ||||||||  ||||||||||||||||||||||||| ||||||||||||||||||| |||||| ||| ||||||||||||||||||||||    
T  42864607 aagaaacataacattagagagaagagaaacatagtagaattcaattagtggtaatggttagaagagagaatagctattgctatgtggtgacgagaaaccc 42864508  T
Q  228 tatttttt 235  Q
    ||||||||    
T  42864507 tatttttt 42864500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 13 - 99
Target Start/End: Complemental strand, 39580320 - 39580234
Alignment:
Q  13 acatcataagtactataaagaaaagaacatctttgtctaatgttgactacttaatagttaacactaatttatgtcgaaaacaaacag 99  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||    
T  39580320 acatcataagtactataaaaaaaagaacatctttgtctaatgttgactacttaacagttaacactaatttatatcgaaaacaaacag 39580234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 13 - 99
Target Start/End: Complemental strand, 25041765 - 25041680
Alignment:
Q  13 acatcataagtactataaagaaaagaacatctttgtctaatgttgactacttaatagttaacactaatttatgtcgaaaacaaacag 99  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||    
T  25041765 acatcataagtactataaa-aaaagaacatctttgtctaatgttgactacttaacagttaacactaatttatatcgaaaacaaacag 25041680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 13 - 99
Target Start/End: Complemental strand, 21869281 - 21869195
Alignment:
Q  13 acatcataagtactataaagaaaagaacatctttgtctaatgttgactacttaatagttaacactaatttatgtcgaaaacaaacag 99  Q
    ||||||||||||||||||| |||| ||||||||||||||||||||||||||||| ||||||||||||||||| | ||||||||||||    
T  21869281 acatcataagtactataaaaaaaaaaacatctttgtctaatgttgactacttaacagttaacactaatttatattgaaaacaaacag 21869195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 128 - 235
Target Start/End: Complemental strand, 959172 - 959065
Alignment:
Q  128 aagaaacatggcattagagcaaagagaaacatagtagaattcaattggtggtaatggttagaagagggaatagttatcgctatgtggtgacgagaaaccc 227  Q
    |||||||||  ||||||||  |||||||||| |||||||||||||  ||||||||||||||||||| |||||| |||  |||||||||||||||||||||    
T  959172 aagaaacataacattagagagaagagaaacagagtagaattcaatcagtggtaatggttagaagagagaatagctatttctatgtggtgacgagaaaccc 959073  T
Q  228 tatttttt 235  Q
    ||||||||    
T  959072 tatttttt 959065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 128 - 235
Target Start/End: Original strand, 53330430 - 53330537
Alignment:
Q  128 aagaaacatggcattagagcaaagagaaacatagtagaattcaattggtggtaatggttagaagagggaatagttatcgctatgtggtgacgagaaaccc 227  Q
    |||||||||  ||||||||  |||||||||| |||||||||||||  ||| ||||||||||||||| |||||| ||| ||||||||||||||||||||||    
T  53330430 aagaaacataacattagagagaagagaaacagagtagaattcaatcagtgataatggttagaagagagaatagctattgctatgtggtgacgagaaaccc 53330529  T
Q  228 tatttttt 235  Q
    ||||||||    
T  53330530 tatttttt 53330537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 128 - 235
Target Start/End: Original strand, 53334114 - 53334221
Alignment:
Q  128 aagaaacatggcattagagcaaagagaaacatagtagaattcaattggtggtaatggttagaagagggaatagttatcgctatgtggtgacgagaaaccc 227  Q
    |||||||||  ||||||||  |||||||||| |||||||||||||  ||| ||||||||||||||| |||||| ||| ||||||||||||||||||||||    
T  53334114 aagaaacataacattagagagaagagaaacagagtagaattcaatcagtgataatggttagaagagagaatagctattgctatgtggtgacgagaaaccc 53334213  T
Q  228 tatttttt 235  Q
    ||||||||    
T  53334214 tatttttt 53334221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 128 - 235
Target Start/End: Original strand, 53337791 - 53337898
Alignment:
Q  128 aagaaacatggcattagagcaaagagaaacatagtagaattcaattggtggtaatggttagaagagggaatagttatcgctatgtggtgacgagaaaccc 227  Q
    |||||||||  ||||||||  |||||||||| |||||||||||||  ||| ||||||||||||||| |||||| ||| ||||||||||||||||||||||    
T  53337791 aagaaacataacattagagagaagagaaacagagtagaattcaatcagtgataatggttagaagagagaatagctattgctatgtggtgacgagaaaccc 53337890  T
Q  228 tatttttt 235  Q
    ||||||||    
T  53337891 tatttttt 53337898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 128 - 231
Target Start/End: Complemental strand, 4533807 - 4533704
Alignment:
Q  128 aagaaacatggcattagagcaaagagaaacatagtagaattcaattggtggtaatggttagaagagggaatagttatcgctatgtggtgacgagaaaccc 227  Q
    |||||||||  ||||||||  |||||||||| |||||||||||||  ||||||||||||||||||| |||||| ||| | ||||||||||||||||||||    
T  4533807 aagaaacataacattagagagaagagaaacagagtagaattcaataagtggtaatggttagaagagagaatagctattgttatgtggtgacgagaaaccc 4533708  T
Q  228 tatt 231  Q
    ||||    
T  4533707 tatt 4533704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 128 - 235
Target Start/End: Complemental strand, 39580230 - 39580123
Alignment:
Q  128 aagaaacatggcattagagcaaagagaaacatagtagaattcaattggtggtaatggttagaagagggaatagttatcgctatgtggtgacgagaaaccc 227  Q
    |||||||||  ||||||||  |||||||||| |||||||||||||  |||||||||||| | |||| |||||| ||| ||||||||||||||||||||||    
T  39580230 aagaaacataacattagagagaagagaaacaaagtagaattcaatcagtggtaatggttggtagagagaatagctattgctatgtggtgacgagaaaccc 39580131  T
Q  228 tatttttt 235  Q
    ||||||||    
T  39580130 tatttttt 39580123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 128 - 235
Target Start/End: Complemental strand, 25041676 - 25041569
Alignment:
Q  128 aagaaacatggcattagagcaaagagaaacatagtagaattcaattggtggtaatggttagaagagggaatagttatcgctatgtggtgacgagaaaccc 227  Q
    |||||||||  ||||||||  |||||||||| ||||||||| |||  ||||||||||||| || || |||||| ||| ||||||||||||||||||||||    
T  25041676 aagaaacataacattagagagaagagaaacagagtagaatttaatcagtggtaatggttaaaaaagagaatagctattgctatgtggtgacgagaaaccc 25041577  T
Q  228 tatttttt 235  Q
    ||||||||    
T  25041576 tatttttt 25041569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 128 - 235
Target Start/End: Complemental strand, 39674514 - 39674409
Alignment:
Q  128 aagaaacatggcattagagcaaagagaaacatagtagaattcaattggtggtaatggttagaagagggaatagttatcgctatgtggtgacgagaaaccc 227  Q
    |||||||||  ||||||||  |||||||||  |||||||||||||  |||||||||  |||||||| |||||| ||| ||||||||||||||||||||||    
T  39674514 aagaaacataacattagagagaagagaaacggagtagaattcaatcagtggtaatg--tagaagagagaatagctattgctatgtggtgacgagaaaccc 39674417  T
Q  228 tatttttt 235  Q
    ||||||||    
T  39674416 tatttttt 39674409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 13 - 99
Target Start/End: Complemental strand, 4533902 - 4533811
Alignment:
Q  13 acatcataagtactataaagaaaa-----gaacatctttgtctaatgttgactacttaatagttaacactaatttatgtcgaaaacaaacag 99  Q
    ||||||||||||||||||| ||||     ||||||||||||||||||||||||| |||| |||||||| |||||||| ||||||||||||||    
T  4533902 acatcataagtactataaaaaaaaaaaaagaacatctttgtctaatgttgactaattaacagttaacaataatttatatcgaaaacaaacag 4533811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 13 - 162
Target Start/End: Complemental strand, 29360159 - 29360010
Alignment:
Q  13 acatcataagtactataaagaaaagaacatctttgtctaatgttgactacttaatagttaacactaatttatgtcgaaaacaaacag-nnnnnnncccaa 111  Q
    |||||||||||||| |||| |||||| ||  ||| ||||||||||||| ||| ||||||||||||||||||  ||||||||||||||         ||||    
T  29360159 acatcataagtactgtaaa-aaaagatcacatttatctaatgttgactgcttgatagttaacactaatttagatcgaaaacaaacagtttttttttccaa 29360061  T
Q  112 ttagtgagaagaacataagaaacatggcattagagcaaagagaaacatagt 162  Q
    |||| |||||||||| |||||||||  ||||||||  ||||||||||||||    
T  29360060 ttagagagaagaacagaagaaacataacattagagagaagagaaacatagt 29360010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 38 - 99
Target Start/End: Complemental strand, 959237 - 959176
Alignment:
Q  38 aacatctttgtctaatgttgactacttaatagttaacactaatttatgtcgaaaacaaacag 99  Q
    |||||||||||||||||||||||||||||  |||| ||||||||||| ||||||||||||||    
T  959237 aacatctttgtctaatgttgactacttaacggttatcactaatttatatcgaaaacaaacag 959176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 33 - 81
Target Start/End: Original strand, 41530359 - 41530407
Alignment:
Q  33 aaaagaacatctttgtctaatgttgactacttaatagttaacactaatt 81  Q
    ||||||||||| |||||||||||||||||||| ||||||||||||||||    
T  41530359 aaaagaacatcattgtctaatgttgactactttatagttaacactaatt 41530407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 19 - 66
Target Start/End: Complemental strand, 42864687 - 42864640
Alignment:
Q  19 taagtactataaagaaaagaacatctttgtctaatgttgactacttaa 66  Q
    ||||||||||||| |||||||||||||||||||||| |||||||||||    
T  42864687 taagtactataaaaaaaagaacatctttgtctaatggtgactacttaa 42864640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 13 - 67
Target Start/End: Complemental strand, 39674584 - 39674531
Alignment:
Q  13 acatcataagtactataaagaaaagaacatctttgtctaatgttgactacttaat 67  Q
    ||||||||||||||||||| |||||||||||||||| | ||||||||||||||||    
T  39674584 acatcataagtactataaa-aaaagaacatctttgtttgatgttgactacttaat 39674531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 184 - 235
Target Start/End: Complemental strand, 29360011 - 29359961
Alignment:
Q  184 gttagaagagggaatagttatcgctatgtggtgacgagaaaccctatttttt 235  Q
    ||||||||||| ||||| ||||||||| |||||||||||||| |||||||||    
T  29360011 gttagaagagg-aatagctatcgctatatggtgacgagaaacactatttttt 29359961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 100; Significance: 1e-49; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 13 - 235
Target Start/End: Complemental strand, 33369224 - 33369007
Alignment:
Q  13 acatcataagtactataaagaaaagaacatctttgtctaatgttgactacttaatagttaacactaatttatgtcgaaaacaaacagnnnnnnncccaat 112  Q
    ||||||||||||||| ||| |||| |||| |||||||||||||||||||||||||||||||||||| ||||  | ||||| || ||        ||||||    
T  33369224 acatcataagtactaaaaaaaaaataacacctttgtctaatgttgactacttaatagttaacactattttagattgaaaa-aatca-attttttcccaat 33369127  T
Q  113 tagtgagaagaacataagaaacatggcattagagcaaagagaaacatagtagaattcaattggtggtaatggttagaagagggaatagttatcgctatgt 212  Q
    |||  ||||||||| ||||||||| |||||||||   ||||||||| |||||||||||||  |||||||||||||||||||||||||| |||||||||||    
T  33369126 tagaaagaagaacagaagaaacatagcattagag---agagaaacagagtagaattcaatcagtggtaatggttagaagagggaatagctatcgctatgt 33369030  T
Q  213 ggtgacgagaaaccctatttttt 235  Q
    ||||||||||||||| |||||||    
T  33369029 ggtgacgagaaacccaatttttt 33369007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 21 - 98
Target Start/End: Original strand, 46397756 - 46397832
Alignment:
Q  21 agtactataaagaaaagaacatctttgtctaatgttgactacttaatagttaacactaatttatgtcgaaaacaaaca 98  Q
    ||||||||||| |||||| ||||||||||||||||||| |||||||||||||||| |||||||| |||||||||||||    
T  46397756 agtactataaa-aaaagagcatctttgtctaatgttgattacttaatagttaacaataatttatatcgaaaacaaaca 46397832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 123 - 235
Target Start/End: Original strand, 46397832 - 46397942
Alignment:
Q  123 aacataagaaacatggcattagagcaaagagaaacatagtagaattcaattggtggtaatggttagaagagggaatagttatcgctatgtggtgacgaga 222  Q
    |||| |||||||||  ||||||||  ||||||||||  |||||||||||| |||||||||| || |||||| |||||  | | | |||||||||||||||    
T  46397832 aacagaagaaacataacattagagagaagagaaaca--gtagaattcaatcggtggtaatgattggaagagagaataactgttgatatgtggtgacgaga 46397929  T
Q  223 aaccctatttttt 235  Q
    |||||||||||||    
T  46397930 aaccctatttttt 46397942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 169 - 235
Target Start/End: Original strand, 23206064 - 23206130
Alignment:
Q  169 caattggtggtaatggttagaagagggaatagttatcgctatgtggtgacgagaaaccctatttttt 235  Q
    ||||| ||||||||||||||||||||| ||| |||||| |  ||||||||||||| || ||||||||    
T  23206064 caattagtggtaatggttagaagaggggatacttatcgttcggtggtgacgagaacccatatttttt 23206130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 91; Significance: 3e-44; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 14 - 235
Target Start/End: Complemental strand, 22293286 - 22293069
Alignment:
Q  14 catcataagtactataaagaaaagaacatctttgtctaatgttgactacttaatagttaacactaatttatgtcgaaaacaaacagnnnnnnncccaatt 113  Q
    |||||||||||||||||| ||||   ||  ||||||||||||||||||||||||||||||||||||||||  || ||||||||||        |||||||    
T  22293286 catcataagtactataaaaaaaa---cacatttgtctaatgttgactacttaatagttaacactaatttagatcaaaaacaaaca-attttttcccaatt 22293191  T
Q  114 agtgagaagaacataagaaacatggcattagagcaaagagaaacatagtagaattcaattggtggtaatggttagaagagggaatagttatcgctatgtg 213  Q
    |  |||||||||| | ||||||| | |||||||  ||||||||||||||||||||  || ||||||||||||||||||||||||||  ||||| ||| ||    
T  22293190 aaagagaagaacagaggaaacatagtattagagagaagagaaacatagtagaatttgatcggtggtaatggttagaagagggaataactatcgttatatg 22293091  T
Q  214 gtgacgagaaaccctatttttt 235  Q
    |||||||||||||||| |||||    
T  22293090 gtgacgagaaaccctacttttt 22293069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 65 - 235
Target Start/End: Complemental strand, 45281149 - 45280978
Alignment:
Q  65 aatagttaacactaatttatgtcgaaaacaaacagnnnnnnncc-caattagtgagaagaacataagaaacatggcattagagcaaagagaaacatagta 163  Q
    |||||||||||||||||||| |||||||||||||         | ||||||| |||||||||| |||||||||| |||||||||||||||||||||||||    
T  45281149 aatagttaacactaatttatatcgaaaacaaacaattttttttctcaattagagagaagaacagaagaaacatgacattagagcaaagagaaacatagta 45281050  T
Q  164 gaattcaattggtggtaatggttagaagagggaatagttatcgctatgtggtgacgagaaaccctatttttt 235  Q
    |||| ||||||||| || ||||||||||||||||||  ||||||| |||||||| |||||||||||||||||    
T  45281049 gaatacaattggtgatattggttagaagagggaataactatcgctgtgtggtgatgagaaaccctatttttt 45280978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 13 - 235
Target Start/End: Original strand, 22204974 - 22205179
Alignment:
Q  13 acatcataagtactataaagaaaagaacatctttgtctaatgttgactacttaatagttaacactaatttatgtcgaaaacaaacagnnnnnnncccaat 112  Q
    |||||| |||||||||||| |||||||||  ||||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||       ||||||    
T  22204974 acatcacaagtactataaa-aaaagaacacttttgtctaatgttgactacctaatagttaacactaatttatatcgaaaagaaacagtttttttcccaat 22205072  T
Q  113 tagtgagaagaacataagaaacatggcattagagcaaagagaaacatagtagaattcaattggtggtaatggttagaagagggaatagttatcgctatgt 212  Q
    |||  ||||||||| ||||| |||  ||||||||               ||||||||||| || |||||||||||||||||||||||| ||||||||| |    
T  22205073 tagatagaagaacagaagaa-catatcattagag---------------tagaattcaatcggcggtaatggttagaagagggaatagctatcgctattt 22205156  T
Q  213 ggtgacgagaaaccctatttttt 235  Q
    |||||||||||||||||||||||    
T  22205157 ggtgacgagaaaccctatttttt 22205179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 13 - 235
Target Start/End: Complemental strand, 22229765 - 22229560
Alignment:
Q  13 acatcataagtactataaagaaaagaacatctttgtctaatgttgactacttaatagttaacactaatttatgtcgaaaacaaacagnnnnnnncccaat 112  Q
    |||||| |||||||||||| |||||||||  ||||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||       ||||||    
T  22229765 acatcacaagtactataaa-aaaagaacacttttgtctaatgttgactacctaatagttaacactaatttatatcgaaaagaaacagtttttttcccaat 22229667  T
Q  113 tagtgagaagaacataagaaacatggcattagagcaaagagaaacatagtagaattcaattggtggtaatggttagaagagggaatagttatcgctatgt 212  Q
    |||  ||||||||| ||||| |||  ||||||||               ||||||||||| || |||||||||||||||||||||||| ||||||||| |    
T  22229666 tagatagaagaacagaagaa-catatcattagag---------------tagaattcaatcggcggtaatggttagaagagggaatagctatcgctattt 22229583  T
Q  213 ggtgacgagaaaccctatttttt 235  Q
    |||||||||||||||||||||||    
T  22229582 ggtgacgagaaaccctatttttt 22229560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 149 - 235
Target Start/End: Complemental strand, 30947876 - 30947790
Alignment:
Q  149 aagagaaacatagtagaattcaattggtggtaatggttagaagagggaatagttatcgctatgtggtgacgagaaaccctatttttt 235  Q
    |||||||||||||||||||||||| |||||||||||||||||||| |||||| ||| ||||||||||||||||||||||||||||||    
T  30947876 aagagaaacatagtagaattcaatcggtggtaatggttagaagagagaatagctattgctatgtggtgacgagaaaccctatttttt 30947790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 13 - 97
Target Start/End: Complemental strand, 30947986 - 30947902
Alignment:
Q  13 acatcataagtactataaagaaaagaacatctttgtctaatgttgactacttaatagttaacactaatttatgtcgaaaacaaac 97  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||| |||| ||||||||||||||||| ||||||||||||    
T  30947986 acatcataagtactataaaaaaaagaacatctttgtctaatgttgactatttaacagttaacactaatttatatcgaaaacaaac 30947902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 128 - 235
Target Start/End: Original strand, 19927994 - 19928101
Alignment:
Q  128 aagaaacatggcattagagcaaagagaaacatagtagaattcaattggtggtaatggttagaagagggaatagttatcgctatgtggtgacgagaaaccc 227  Q
    |||||||||  ||||||||  |||||||||| |||||||||||||  ||||||||||||||||||| |||||| ||| |||||||||||||||||||||     
T  19927994 aagaaacataacattagagagaagagaaacagagtagaattcaatcagtggtaatggttagaagagagaatagctattgctatgtggtgacgagaaacca 19928093  T
Q  228 tatttttt 235  Q
    ||||||||    
T  19928094 tatttttt 19928101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 13 - 99
Target Start/End: Original strand, 19927905 - 19927990
Alignment:
Q  13 acatcataagtactataaagaaaagaacatctttgtctaatgttgactacttaatagttaacactaatttatgtcgaaaacaaacag 99  Q
    ||||||||||||||||||| |||||||||||||| ||||||||||||||||||| ||||| ||||||||||| ||||||||||||||    
T  19927905 acatcataagtactataaa-aaaagaacatctttatctaatgttgactacttaacagttatcactaatttatatcgaaaacaaacag 19927990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 13 - 99
Target Start/End: Original strand, 26279596 - 26279681
Alignment:
Q  13 acatcataagtactataaagaaaagaacatctttgtctaatgttgactacttaatagttaacactaatttatgtcgaaaacaaacag 99  Q
    ||||||||||||||||||| ||||||||||||||||| |||||||||||||||| |||||||| |||||||| ||||||||||||||    
T  26279596 acatcataagtactataaa-aaaagaacatctttgtccaatgttgactacttaacagttaacattaatttatatcgaaaacaaacag 26279681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 13 - 99
Target Start/End: Original strand, 40819581 - 40819667
Alignment:
Q  13 acatcataagtactataaagaaaagaacatctttgtctaatgttgactacttaatagttaacactaatttatgtcgaaaacaaacag 99  Q
    ||||||||||||||||||| |||||||||||||| |||||||||||||||||||  |||| ||||||||||| ||||||||||||||    
T  40819581 acatcataagtactataaaaaaaagaacatctttatctaatgttgactacttaactgttatcactaatttatatcgaaaacaaacag 40819667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 128 - 225
Target Start/End: Original strand, 40819671 - 40819768
Alignment:
Q  128 aagaaacatggcattagagcaaagagaaacatagtagaattcaattggtggtaatggttagaagagggaatagttatcgctatgtggtgacgagaaac 225  Q
    |||||||||  ||||||||  |||||||||| |||||||||||||  ||||||||||||||||||| |||||| ||| ||||||||||||||||||||    
T  40819671 aagaaacataacattagagagaagagaaacagagtagaattcaataagtggtaatggttagaagagagaatagctattgctatgtggtgacgagaaac 40819768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 33 - 96
Target Start/End: Complemental strand, 25444005 - 25443942
Alignment:
Q  33 aaaagaacatctttgtctaatgttgactacttaatagttaacactaatttatgtcgaaaacaaa 96  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||    
T  25444005 aaaagaacatctttgtctaatgttgactacttaacagttaacactaatttatatcgaaaacaaa 25443942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 128 - 224
Target Start/End: Original strand, 26279685 - 26279781
Alignment:
Q  128 aagaaacatggcattagagcaaagagaaacatagtagaattcaattggtggtaatggttagaagagggaatagttatcgctatgtggtgacgagaaa 224  Q
    |||||||||  ||||||||  |||||||||| |||||||||||||  ||||||||||||||||||| |||||| ||| | |||||||||||||||||    
T  26279685 aagaaacataacattagagagaagagaaacagagtagaattcaatcagtggtaatggttagaagagagaatagctattgttatgtggtgacgagaaa 26279781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 128 - 228
Target Start/End: Complemental strand, 25443935 - 25443835
Alignment:
Q  128 aagaaacatggcattagagcaaagagaaacatagtagaattcaattggtggtaatggttagaagagggaatagttatcgctatgtggtgacgagaaaccc 227  Q
    |||||||||  ||||||||  |||||||||| |||||||||||||  |||||||||||||||| || |||||| ||| | |||||||||| |||||||||    
T  25443935 aagaaacataacattagagagaagagaaacagagtagaattcaatctgtggtaatggttagaaaagagaatagctattgatatgtggtgatgagaaaccc 25443836  T
Q  228 t 228  Q
    |    
T  25443835 t 25443835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 195 - 235
Target Start/End: Original strand, 37243006 - 37243046
Alignment:
Q  195 gaatagttatcgctatgtggtgacgagaaaccctatttttt 235  Q
    |||||||||| ||||||||||||||||||||||||||||||    
T  37243006 gaatagttattgctatgtggtgacgagaaaccctatttttt 37243046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 44 - 82
Target Start/End: Complemental strand, 45281207 - 45281169
Alignment:
Q  44 tttgtctaatgttgactacttaatagttaacactaattt 82  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  45281207 tttgtctaatgttgactgcttaatagttaacactaattt 45281169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 45 - 98
Target Start/End: Original strand, 26244664 - 26244717
Alignment:
Q  45 ttgtctaatgttgactacttaatagttaacactaatttatgtcgaaaacaaaca 98  Q
    |||||||||||||||||||||||| |||||||||||| |  | |||||||||||    
T  26244664 ttgtctaatgttgactacttaataattaacactaattgagattgaaaacaaaca 26244717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 70; Significance: 1e-31; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 13 - 98
Target Start/End: Complemental strand, 14811703 - 14811618
Alignment:
Q  13 acatcataagtactataaagaaaagaacatctttgtctaatgttgactacttaatagttaacactaatttatgtcgaaaacaaaca 98  Q
    |||| |||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||    
T  14811703 acatgataagtactataaaaaaaagaacatctttgtctaatgttgactacttaacagttaacactaatttatatcgaaaacaaaca 14811618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 13 - 99
Target Start/End: Original strand, 14314036 - 14314124
Alignment:
Q  13 acatcataagtactataaagaaaa--gaacatctttgtctaatgttgactacttaatagttaacactaatttatgtcgaaaacaaacag 99  Q
    ||||||||||||||||||| ||||  |||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||    
T  14314036 acatcataagtactataaaaaaaaaagaacatttttgtctaatgttgactacttaacagttaacactaatttatatcgaaaacaaacag 14314124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 128 - 235
Target Start/End: Complemental strand, 14811613 - 14811506
Alignment:
Q  128 aagaaacatggcattagagcaaagagaaacatagtagaattcaattggtggtaatggttagaagagggaatagttatcgctatgtggtgacgagaaaccc 227  Q
    |||||||||  ||||||||  |||||||| | |||||||||||||  ||||||||||||||||||| |||||| ||| ||||||||||||||||||| ||    
T  14811613 aagaaacataacattagagagaagagaaatagagtagaattcaatcagtggtaatggttagaagagagaatagctattgctatgtggtgacgagaaatcc 14811514  T
Q  228 tatttttt 235  Q
    ||||||||    
T  14811513 tatttttt 14811506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 128 - 235
Target Start/End: Original strand, 14314127 - 14314241
Alignment:
Q  128 aagaaacatggcattagagcaaagagaaacatagtagaattcaattggtggtaatggttagaagagggaata-------gttatcgctatgtggtgacga 220  Q
    |||||||||  ||||||||  |||||||||| |||||||||||||    ||||||||||||||||| |||||       | ||| |||||||||||||||    
T  14314127 aagaaacataacattagagagaagagaaacaaagtagaattcaatcaccggtaatggttagaagagagaataactattggctattgctatgtggtgacga 14314226  T
Q  221 gaaaccctatttttt 235  Q
    |||||||||||||||    
T  14314227 gaaaccctatttttt 14314241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 168 - 233
Target Start/End: Complemental strand, 29081213 - 29081148
Alignment:
Q  168 tcaattggtggtaatggttagaagagggaatagttatcgctatgtggtgacgagaaaccctatttt 233  Q
    ||||| ||||||||||||||||||||||||||  ||| |||  ||||||||||| |||||||||||    
T  29081213 tcaatcggtggtaatggttagaagagggaataactattgctcggtggtgacgaggaaccctatttt 29081148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 33 - 98
Target Start/End: Original strand, 13043498 - 13043563
Alignment:
Q  33 aaaagaacatctttgtctaatgttgactacttaatagttaacactaatttatgtcgaaaacaaaca 98  Q
    |||| |||||| ||||||||||||||| |||||||| |||||||||||| |  | |||||||||||    
T  13043498 aaaaaaacatcattgtctaatgttgaccacttaatacttaacactaattgagattgaaaacaaaca 13043563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 117 - 169
Target Start/End: Original strand, 13043614 - 13043666
Alignment:
Q  117 gagaagaacataagaaacatggcattagagcaaagagaaacatagtagaattc 169  Q
    |||||||||| |||||||||  ||||||||  |||||||||||||||||||||    
T  13043614 gagaagaacagaagaaacataacattagagagaagagaaacatagtagaattc 13043666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 168 - 235
Target Start/End: Original strand, 13043716 - 13043783
Alignment:
Q  168 tcaattggtggtaatggttagaagagggaatagttatcgctatgtggtgacgagaaaccctatttttt 235  Q
    |||||||||| |||||||||||| ||||||||  |||||||  | ||||||||| ||||||| |||||    
T  13043716 tcaattggtgataatggttagaaaagggaataactatcgcttagcggtgacgaggaaccctagttttt 13043783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 68; Significance: 2e-30; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 128 - 235
Target Start/End: Complemental strand, 21112425 - 21112318
Alignment:
Q  128 aagaaacatggcattagagcaaagagaaacatagtagaattcaattggtggtaatggttagaagagggaatagttatcgctatgtggtgacgagaaaccc 227  Q
    |||||||||  ||||||||  |||||||||| |||||||||||||  ||||||||||||||||||| |||||| ||| ||||||||||||||||||||||    
T  21112425 aagaaacataacattagagagaagagaaacagagtagaattcaatcagtggtaatggttagaagagagaatagctattgctatgtggtgacgagaaaccc 21112326  T
Q  228 tatttttt 235  Q
    ||||||||    
T  21112325 tatttttt 21112318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 128 - 235
Target Start/End: Complemental strand, 8862367 - 8862260
Alignment:
Q  128 aagaaacatggcattagagcaaagagaaacatagtagaattcaattggtggtaatggttagaagagggaatagttatcgctatgtggtgacgagaaaccc 227  Q
    |||||||||  ||||| ||  |||||||||| |||||||||||||  ||||||||||||||||||| |||||| ||| |||||| |||||||||||||||    
T  8862367 aagaaacataacattatagagaagagaaacagagtagaattcaatcagtggtaatggttagaagagagaatagctattgctatgcggtgacgagaaaccc 8862268  T
Q  228 tatttttt 235  Q
    ||||||||    
T  8862267 tatttttt 8862260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 13 - 99
Target Start/End: Complemental strand, 8862458 - 8862371
Alignment:
Q  13 acatcataagtactataaagaaaa-gaacatctttgtctaatgttgactacttaatagttaacactaatttatgtcgaaaacaaacag 99  Q
    ||||||||  ||||||||| |||| ||||||||||||||||||||||| |||||| ||||| ||||||||||| ||||||||||||||    
T  8862458 acatcatagttactataaaaaaaaagaacatctttgtctaatgttgaccacttaacagttatcactaatttatatcgaaaacaaacag 8862371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 13 - 99
Target Start/End: Complemental strand, 21112520 - 21112429
Alignment:
Q  13 acatcataagtactataaagaaaagaa-----catctttgtctaatgttgactacttaatagttaacactaatttatgtcgaaaacaaacag 99  Q
    ||||||||||||||||||| |||| ||     ||||||||||||||||||||||||||| ||||||||||||||||| || |||||||||||    
T  21112520 acatcataagtactataaaaaaaaaaaaaaaacatctttgtctaatgttgactacttaacagttaacactaatttatatcaaaaacaaacag 21112429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 117 - 162
Target Start/End: Original strand, 9150003 - 9150048
Alignment:
Q  117 gagaagaacataagaaacatggcattagagcaaagagaaacatagt 162  Q
    |||||||||| ||||||||| |||||||||  ||||||||||||||    
T  9150003 gagaagaacacaagaaacatagcattagagagaagagaaacatagt 9150048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 67; Significance: 7e-30; HSPs: 2)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 13 - 99
Target Start/End: Original strand, 37701 - 37787
Alignment:
Q  13 acatcataagtactataaagaaaagaacatctttgtctaatgttgactacttaatagttaacactaatttatgtcgaaaacaaacag 99  Q
    ||||||||||||||||||| ||| |||||||||||||||||||||||||||||| ||||||||| ||||||| ||||||||||||||    
T  37701 acatcataagtactataaaaaaatgaacatctttgtctaatgttgactacttaacagttaacacaaatttatatcgaaaacaaacag 37787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 128 - 235
Target Start/End: Original strand, 37791 - 37898
Alignment:
Q  128 aagaaacatggcattagagcaaagagaaacatagtagaattcaattggtggtaatggttagaagagggaatagttatcgctatgtggtgacgagaaaccc 227  Q
    |||||||||  ||||||||  |||||||||| |||||||||||||  | |||||||||||||||||  ||||| ||| ||||||||||||||||||||||    
T  37791 aagaaacataacattagagagaagagaaacagagtagaattcaatcagcggtaatggttagaagagaaaatagctattgctatgtggtgacgagaaaccc 37890  T
Q  228 tatttttt 235  Q
    ||||||||    
T  37891 tatttttt 37898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 64; Significance: 4e-28; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 128 - 235
Target Start/End: Complemental strand, 54260462 - 54260355
Alignment:
Q  128 aagaaacatggcattagagcaaagagaaacatagtagaattcaattggtggtaatggttagaagagggaatagttatcgctatgtggtgacgagaaaccc 227  Q
    |||||||||  ||||||||  |||||||||| |||||||||||||  ||||||||||||||||||| |||||| ||| ||||||||||||||||||| ||    
T  54260462 aagaaacataacattagagagaagagaaacagagtagaattcaatcagtggtaatggttagaagagagaatagctattgctatgtggtgacgagaaaacc 54260363  T
Q  228 tatttttt 235  Q
    ||||||||    
T  54260362 tatttttt 54260355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 24 - 99
Target Start/End: Complemental strand, 54260540 - 54260466
Alignment:
Q  24 actataaagaaaagaacatctttgtctaatgttgactacttaatagttaacactaatttatgtcgaaaacaaacag 99  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  54260540 actataaa-aaaagaacatctttgtctaatgttgactacttaatagttaacactaatttatatcgaaaacaaacag 54260466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 169 - 234
Target Start/End: Complemental strand, 26261329 - 26261264
Alignment:
Q  169 caattggtggtaatggttagaagagggaatagttatcgctatgtggtgacgagaaaccctattttt 234  Q
    |||||||||||||||||||||||||||||||| ||| |||  ||||||||||||||| ||||||||    
T  26261329 caattggtggtaatggttagaagagggaatagctatagctcggtggtgacgagaaactctattttt 26261264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 13 - 75
Target Start/End: Complemental strand, 26261611 - 26261550
Alignment:
Q  13 acatcataagtactataaagaaaagaacatctttgtctaatgttgactacttaatagttaaca 75  Q
    ||||||| |||||||| || ||||||||||| |||||||||||||||||||||||| ||||||    
T  26261611 acatcattagtactatcaa-aaaagaacatcattgtctaatgttgactacttaataattaaca 26261550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 82
Target Start/End: Complemental strand, 51161515 - 51161448
Alignment:
Q  13 acatcataagtactataaagaaaagaacatctttgtctaatgttgactacttaatagttaacactaattt 82  Q
    ||||||| ||||||||| |  |||||||| | |||| ||||||||| ||||||||||||||| |||||||    
T  51161515 acatcattagtactataca--aaagaacaccattgtataatgttgattacttaatagttaaccctaattt 51161448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University