View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6920_low_13 (Length: 232)
Name: NF6920_low_13
Description: NF6920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6920_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 37983660 - 37983874
Alignment:
| Q |
1 |
tttgtgtactaacccaaacaataccagtaacaccaataactgatcctaaagttgaactaagtaaaagccaattgaaaaaagttgcaagtgcttttgcttc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37983660 |
tttgtgtactaacccaaacaataccagtaacaccaataactgaacctaaagttgaactaagtaaaagccaattgaaaaaagttgcaagtgcttttgcttc |
37983759 |
T |
|
| Q |
101 |
atttggatccttttcatcaaattggttagcaccaaatgctgtcaatgaacctcttactccacccattcccaaagcatacaaacacaatgatgtgtaaaac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37983760 |
atttggatccttttcatcaaattggttagcaccaaatgctgtcaatgaacctcttactccacccattcccaaagcatacaaacacaatgatgtgtaaaac |
37983859 |
T |
|
| Q |
201 |
attacagctatacct |
215 |
Q |
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||||||||||||||| |
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| T |
37983860 |
attacagctatacct |
37983874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 45659790 - 45659589
Alignment:
| Q |
1 |
tttgtgtactaacccaaacaataccagtaacaccaataactgatcctaaagttgaactaagtaaaagccaattgaaaaaagttgcaagtgcttttgcttc |
100 |
Q |
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||||||||||||||||||||| |||||||||||| ||| || ||| | ||||||||||| |||||||||||||||||| |||||||||||||||| || |
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| T |
45659790 |
tttgtgtactaacccaaacaacaccagtaacacctgtaattgctccaagtgttgaactaagcaaaagccaattgaaaaaacttgcaagtgcttttgcctc |
45659691 |
T |
|
| Q |
101 |
atttggatccttttcatcaaattggttagcaccaaatgctgtcaatgaacctcttactccacccattcccaaagcatacaaacacaatgatgtgtaaaac |
200 |
Q |
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||||| ||||||||| |||||||||| |||||||||||| |||| || |||||||| || || |||||||| || |||||| || ||||||||||||| |
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| T |
45659690 |
atttgaatccttttcttcaaattggtcagcaccaaatgcagtcatagatcctcttacccctcctattcccaatgccaacaaactcagtgatgtgtaaaac |
45659591 |
T |
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| Q |
201 |
at |
202 |
Q |
| |
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|| |
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| T |
45659590 |
at |
45659589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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