View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6920_low_7 (Length: 268)
Name: NF6920_low_7
Description: NF6920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6920_low_7 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 48 - 252
Target Start/End: Original strand, 13792620 - 13792824
Alignment:
| Q |
48 |
aggaactcaaacccagatgaatgacaaaatgaaaatcgacagagccaactgaaaacagcaaccaaaccacaaaagtatttatacactaagaagagggcaa |
147 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| |
|
|
| T |
13792620 |
aggaactcaaacccagatgaatgacaaaatgaaaatcgacagagccaactgaaaacagcaaccaaaccacacaactatttatacactaagaagagggcaa |
13792719 |
T |
|
| Q |
148 |
tagagagatttcaacatatagacaaaactaacaaaaaaggaatttgtacctccacaacaaaacaaaatggaagattaagatgtgggaagatcttcccaaa |
247 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13792720 |
tagagatatttcaacatatagacaaaactaacaaaaaaggaatatgtacctccacaacaaaacaaaatggaagattaagatgtgggaagatcttcccaaa |
13792819 |
T |
|
| Q |
248 |
aatac |
252 |
Q |
| |
|
||||| |
|
|
| T |
13792820 |
aatac |
13792824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 55 - 246
Target Start/End: Original strand, 18354539 - 18354730
Alignment:
| Q |
55 |
caaacccagatgaatgacaaaatgaaaatcgacagagccaactgaaaacagcaaccaaaccacaaaagtatttatacactaagaagagggcaatagagag |
154 |
Q |
| |
|
|||| ||||| |||| ||||||||| | ||| || || |||||||||||| |||||| |||||| | |||||||||| | |||||||||||||||||| |
|
|
| T |
18354539 |
caaaaccagacgaataacaaaatgagactcggcacaggcaactgaaaacaacaaccataccacaccaccatttatacaccaggaagagggcaatagagag |
18354638 |
T |
|
| Q |
155 |
atttcaacatatagacaaaactaacaaaaaaggaatttgtacctccacaacaaaacaaaatggaagattaagatgtgggaagatcttcccaa |
246 |
Q |
| |
|
|||||||| || |||||||||| ||||||||||||| ||||||||||||| | |||||||| |||||||||||||||||||||| ||||||| |
|
|
| T |
18354639 |
atttcaacttagagacaaaactgacaaaaaaggaatatgtacctccacaagacaacaaaatagaagattaagatgtgggaagattttcccaa |
18354730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 94; Significance: 6e-46; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 48 - 249
Target Start/End: Original strand, 24241149 - 24241350
Alignment:
| Q |
48 |
aggaactcaaacccagatgaatgacaaaatgaaaatcgacagagccaactgaaaacagcaaccaaaccacaaaagtatttatacactaagaagagggcaa |
147 |
Q |
| |
|
||||||||||||||| | ||||||||||| ||| | || | | |||| ||||||||| ||||| |||||| || ||||||||||| | ||||| ||||| |
|
|
| T |
24241149 |
aggaactcaaacccaactaaatgacaaaataaaactagagacaaccaattgaaaacagaaaccagaccacacaactatttatacaccaggaagaaggcaa |
24241248 |
T |
|
| Q |
148 |
tagagagatttcaacatatagacaaaactaacaaaaaaggaatttgtacctccacaacaaaacaaaatggaagattaagatgtgggaagatcttcccaaa |
247 |
Q |
| |
|
|||||||| | ||||||| ||| |||||| |||||||| |||| ||||| |||| || |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24241249 |
tagagagagtacaacataaagataaaactgacaaaaaaagaatatgtacatccaaaataaaacaaaatggaagattaagatgtgggaagatcttcccaaa |
24241348 |
T |
|
| Q |
248 |
aa |
249 |
Q |
| |
|
|| |
|
|
| T |
24241349 |
aa |
24241350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University