View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6921_high_4 (Length: 412)

Name: NF6921_high_4
Description: NF6921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6921_high_4
NF6921_high_4
[»] chr4 (14 HSPs)
chr4 (1-412)||(17742914-17743325)
chr4 (240-364)||(39938137-39938260)
chr4 (220-271)||(14116297-14116348)
chr4 (254-335)||(9883828-9883909)
chr4 (229-274)||(10328934-10328979)
chr4 (226-274)||(24619129-24619178)
chr4 (228-272)||(5902175-5902219)
chr4 (240-275)||(15193223-15193258)
chr4 (243-274)||(19052769-19052800)
chr4 (245-340)||(21546278-21546373)
chr4 (225-271)||(17133383-17133428)
chr4 (159-269)||(13929594-13929702)
chr4 (284-364)||(16404779-16404859)
chr4 (238-274)||(23087167-23087203)
[»] chr8 (10 HSPs)
chr8 (240-393)||(12842672-12842820)
chr8 (225-324)||(10517149-10517248)
chr8 (225-407)||(20704159-20704342)
chr8 (225-407)||(33929116-33929297)
chr8 (229-271)||(27137721-27137763)
chr8 (238-274)||(17687440-17687476)
chr8 (238-274)||(24498764-24498800)
chr8 (228-271)||(14547725-14547767)
chr8 (228-274)||(17879112-17879158)
chr8 (220-271)||(18529691-18529743)
[»] chr2 (11 HSPs)
chr2 (225-406)||(30461966-30462147)
chr2 (240-388)||(18114279-18114430)
chr2 (240-364)||(27918899-27919021)
chr2 (239-363)||(29966866-29966990)
chr2 (228-275)||(16735569-16735616)
chr2 (247-334)||(35512623-35512710)
chr2 (228-274)||(33240190-33240236)
chr2 (228-274)||(33248111-33248157)
chr2 (238-272)||(40202969-40203003)
chr2 (246-334)||(22111276-22111365)
chr2 (239-268)||(16195759-16195788)
[»] chr7 (14 HSPs)
chr7 (238-401)||(4123311-4123472)
chr7 (238-274)||(12223093-12223129)
chr7 (238-274)||(19416754-19416790)
chr7 (229-334)||(4514583-4514689)
chr7 (208-271)||(31270630-31270693)
chr7 (225-271)||(11693637-11693683)
chr7 (260-341)||(7145369-7145450)
chr7 (238-271)||(24677021-24677054)
chr7 (238-274)||(3779333-3779369)
chr7 (231-271)||(5459940-5459980)
chr7 (242-274)||(9065029-9065061)
chr7 (242-274)||(9802642-9802674)
chr7 (238-274)||(20597831-20597867)
chr7 (241-285)||(21633965-21634009)
[»] chr1 (9 HSPs)
chr1 (225-355)||(34487742-34487872)
chr1 (228-367)||(11833002-11833141)
chr1 (225-341)||(26858722-26858839)
chr1 (251-409)||(17048576-17048734)
chr1 (238-274)||(18515486-18515522)
chr1 (241-274)||(23917325-23917358)
chr1 (238-274)||(25398862-25398898)
chr1 (197-272)||(15570937-15571012)
chr1 (239-269)||(24154679-24154709)
[»] chr6 (8 HSPs)
chr6 (220-271)||(12870654-12870705)
chr6 (343-407)||(18773566-18773629)
chr6 (228-275)||(13242694-13242741)
chr6 (238-272)||(31720242-31720276)
chr6 (238-274)||(14757809-14757845)
chr6 (228-274)||(12183516-12183562)
chr6 (218-274)||(4098245-4098299)
chr6 (231-267)||(33545794-33545830)
[»] scaffold0340 (1 HSPs)
scaffold0340 (228-274)||(17446-17492)
[»] chr5 (4 HSPs)
chr5 (343-401)||(22642020-22642078)
chr5 (238-274)||(26119223-26119259)
chr5 (225-334)||(19761143-19761253)
chr5 (225-387)||(25954980-25955138)
[»] chr3 (8 HSPs)
chr3 (238-274)||(17769648-17769684)
chr3 (238-274)||(19070949-19070985)
chr3 (238-274)||(19431900-19431936)
chr3 (123-274)||(13494757-13494911)
chr3 (240-274)||(2120984-2121018)
chr3 (238-271)||(12412258-12412291)
chr3 (242-270)||(16093920-16093948)
chr3 (238-274)||(19225286-19225322)
[»] scaffold1339 (1 HSPs)
scaffold1339 (241-275)||(1725-1759)
[»] scaffold0606 (1 HSPs)
scaffold0606 (228-274)||(4988-5034)
[»] scaffold0008 (2 HSPs)
scaffold0008 (239-335)||(3768-3864)
scaffold0008 (225-268)||(9857-9900)


Alignment Details
Target: chr4 (Bit Score: 384; Significance: 0; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 1 - 412
Target Start/End: Original strand, 17742914 - 17743325
Alignment:
Q  1 taaaagtatccgtctatgtaagaaaatagaccacattccttaaatattgcttggagttgtgtatcaattaattggtgtagcgtaccacattccttaaaat 100  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17742914 taaaagtatccgtctttgtaagaaaatagaccacattccttaaatattgcttggagttgtgtatcaattaattggtgtagcgtaccacattccttaaaat 17743013  T
Q  101 gttcatgaaaatctttttaagagttttaacaaaaacagagcaggagataatcagtgagagagaagaaagacaacataaacaaattattctggtcatctca 200  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17743014 gtttatgaaaatctttttaagagttttaacaaaaacagagcaggagataatcagtgagagagaagaaagacaacataaacaaattattctggtcatctca 17743113  T
Q  201 taatccaaggtcagtctaattccattgcactttcaatagatttttcactataatcacacaagattacaattgcttcaacgcataagttagagacttattt 300  Q
    |||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  17743114 taatccaaggtcagtctagttccattgcactttcaacagatttttcactataatcacacaagattacaattgcttcaatgcataagttagagacttattt 17743213  T
Q  301 ggctcacacaagaggaattttacaatcagagtttattaaatgaatttgaatgtgtatacactttgtactcaaagagtggtaaactaaacttaaggttcaa 400  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  17743214 ggctcacacaagaggacttttacaatcagagtttattaaatgaatttgaatgtgcatacactttgtactcaaagagtggtaaactaaacttaaggttcaa 17743313  T
Q  401 gaaacttttaac 412  Q
    ||||||||||||    
T  17743314 gaaacttttaac 17743325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 240 - 364
Target Start/End: Original strand, 39938137 - 39938260
Alignment:
Q  240 atttttcactataatcacacaagattacaattgcttcaacgcataagttagagacttatttggctcacacaagaggaattttacaatcagagtttattaa 339  Q
    |||||||||||||| ||||||| |||||||||||| || | || |||| | ||||||||||  |||||| || | || || |||||||||||||||  ||    
T  39938137 atttttcactataaccacacaaaattacaattgctccagcacacaagtcacagacttatttacctcacaaaaaatgatttatacaatcagagttta-caa 39938235  T
Q  340 atgaatttgaatgtgtatacacttt 364  Q
    || |||||| |||||| ||||||||    
T  39938236 ataaatttgtatgtgtttacacttt 39938260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 220 - 271
Target Start/End: Original strand, 14116297 - 14116348
Alignment:
Q  220 ttccattgcactttcaatagatttttcactataatcacacaagattacaatt 271  Q
    |||| |||||||| |||| ||| |||||||||||||||||||||||||||||    
T  14116297 ttcccttgcacttccaatggatatttcactataatcacacaagattacaatt 14116348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 254 - 335
Target Start/End: Complemental strand, 9883909 - 9883828
Alignment:
Q  254 tcacacaagattacaattgcttcaacgcataagttagagacttatttggctcacacaagaggaattttacaatcagagttta 335  Q
    |||||||||||||||| ||||  ||| || |||||  | ||||  ||| ||||||||||||||||| |||||||||||||||    
T  9883909 tcacacaagattacaactgctcaaacacacaagtttaaaacttccttgtctcacacaagaggaattatacaatcagagttta 9883828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 229 - 274
Target Start/End: Complemental strand, 10328979 - 10328934
Alignment:
Q  229 actttcaatagatttttcactataatcacacaagattacaattgct 274  Q
    |||| ||| |||||||||||||||||||||||||||||||| ||||    
T  10328979 acttgcaagagatttttcactataatcacacaagattacaaatgct 10328934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 226 - 274
Target Start/End: Original strand, 24619129 - 24619178
Alignment:
Q  226 tgcactttcaat-agatttttcactataatcacacaagattacaattgct 274  Q
    ||||||| |||| |||||||||||| ||||||||||||||||||||||||    
T  24619129 tgcacttccaatgagatttttcactttaatcacacaagattacaattgct 24619178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 228 - 272
Target Start/End: Complemental strand, 5902219 - 5902175
Alignment:
Q  228 cactttcaatagatttttcactataatcacacaagattacaattg 272  Q
    ||||| |||||||||||||||||| || |||||||||||||||||    
T  5902219 cacttacaatagatttttcactattattacacaagattacaattg 5902175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 240 - 275
Target Start/End: Original strand, 15193223 - 15193258
Alignment:
Q  240 atttttcactataatcacacaagattacaattgctt 275  Q
    |||||| |||||||||||||||||||||||||||||    
T  15193223 attttttactataatcacacaagattacaattgctt 15193258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 243 - 274
Target Start/End: Original strand, 19052769 - 19052800
Alignment:
Q  243 tttcactataatcacacaagattacaattgct 274  Q
    ||||||||||||||||||||||||||||||||    
T  19052769 tttcactataatcacacaagattacaattgct 19052800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 245 - 340
Target Start/End: Complemental strand, 21546373 - 21546278
Alignment:
Q  245 tcactataatcacacaagattacaattgcttcaacgcataagttagagacttatttggctcacacaagaggaattttacaatcagagtttattaaa 340  Q
    |||||||||||||||||||||| ||||| | |||| || |||| || |||||  | | ||||||||||| || || |||||| |||||||| ||||    
T  21546373 tcactataatcacacaagattataattgttccaacacacaagtcagtgacttcctcgcctcacacaagacgacttatacaataagagtttaataaa 21546278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 225 - 271
Target Start/End: Original strand, 17133383 - 17133428
Alignment:
Q  225 ttgcactttcaatagatttttcactataatcacacaagattacaatt 271  Q
    ||||||||||||| || |||||||| |||||||||||||||||||||    
T  17133383 ttgcactttcaat-gaattttcactgtaatcacacaagattacaatt 17133428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 269
Target Start/End: Complemental strand, 13929702 - 13929594
Alignment:
Q  159 agagaagaaagacaacataaacaaattattctggt-catctcataatccaaggtcagtctaattccattgcactttcaatagatttttcactataatcac 257  Q
    |||||| |||||||||| |||||||||||| |||| |  |||||||||| | || |||  |   || |||||||| ||| |||||||||||||||| |||    
T  13929702 agagaaaaaagacaacacaaacaaattattttggttcccctcataatccgaagtaagtgca---cccttgcacttccaagagatttttcactataaccac 13929606  T
Q  258 acaagattacaa 269  Q
    | ||||||||||    
T  13929605 ataagattacaa 13929594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 284 - 364
Target Start/End: Complemental strand, 16404859 - 16404779
Alignment:
Q  284 aagttagagacttatttggctcacacaagaggaattttacaatcagagtttattaaatgaatttgaatgtgtatacacttt 364  Q
    |||||||||||||  ||  |||||||| ||||| || ||||| ||||||||   ||||||||||| |||||| ||||||||    
T  16404859 aagttagagacttccttctctcacacacgaggacttatacaaacagagttttacaaatgaatttgtatgtgtttacacttt 16404779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 238 - 274
Target Start/End: Original strand, 23087167 - 23087203
Alignment:
Q  238 agatttttcactataatcacacaagattacaattgct 274  Q
    |||||||||||||||||||||||| |||| |||||||    
T  23087167 agatttttcactataatcacacaatattataattgct 23087203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 66; Significance: 5e-29; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 240 - 393
Target Start/End: Original strand, 12842672 - 12842820
Alignment:
Q  240 atttttcactataatcacacaagattacaattgcttcaacgcataagttagagacttatttggctcacacaagaggaattttacaatcagagtttattaa 339  Q
    |||||| |||||||||||||||||||||||||| |  ||| || ||||| ||||||| |||| ||||||||||||||||| |||||| ||||||||| ||    
T  12842672 attttttactataatcacacaagattacaattgatcaaacacacaagtttgagacttctttgcctcacacaagaggaattatacaattagagtttatcaa 12842771  T
Q  340 atgaatttgaatgtgtatacactttgtactcaaagagtggtaaactaaacttaa 393  Q
    || |||      |||| | |||||||||||||||||||||||||| ||||||||    
T  12842772 ataaat-----cgtgtttgcactttgtactcaaagagtggtaaacaaaacttaa 12842820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 225 - 324
Target Start/End: Complemental strand, 10517248 - 10517149
Alignment:
Q  225 ttgcactttcaatagatttttcactataatcacacaagattacaattgcttcaacgcataagttagagacttatttggctcacacaagaggaattttaca 324  Q
    |||||||||||| |||||||| ||||||||||||||||||| |||||| |  ||| ||||||| ||||||||  ||| || ||||||||||| |||||||    
T  10517248 ttgcactttcaagagattttttactataatcacacaagattgcaattgatctaacacataagtcagagacttccttgtcttacacaagaggacttttaca 10517149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 225 - 407
Target Start/End: Original strand, 20704159 - 20704342
Alignment:
Q  225 ttgcactttc-aatagatttttcactataatcacacaagattacaattgcttcaacgcataagttagagacttatttggctcacacaagaggaattttac 323  Q
    |||||||||| |||||||||| ||||| |||||||||||||||||| ||||  ||| || ||||| |||||||  ||| |||| ||||||||| |   ||    
T  20704159 ttgcactttctaatagattttccactacaatcacacaagattacaactgctcaaacacacaagtttgagacttccttgtctcagacaagaggactcacac 20704258  T
Q  324 aatcagagtttattaaatgaatttgaatgtgtatacactttgtactcaaagagtggtaaactaaacttaaggttcaagaaactt 407  Q
    | | ||||||||  |||| |||  || ||||| |||| |||    ||| |||||||||||| |||||||| ||||||| |||||    
T  20704259 agttagagtttaacaaataaatgagactgtgtttacagtttaatatcatagagtggtaaacaaaacttaaagttcaagtaactt 20704342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 225 - 407
Target Start/End: Complemental strand, 33929297 - 33929116
Alignment:
Q  225 ttgcactttcaatagatttttcactataatcacacaagattacaattgcttcaacgcataagttagagacttatttggctcacacaagaggaattttaca 324  Q
    |||||||| |||  |||||||||||||||||||||||||||| ||||  |  ||| |  ||||| |||||||  ||  |||||||||||||| || |||     
T  33929297 ttgcacttccaaatgatttttcactataatcacacaagattataatttatcaaacacgcaagtt-gagactttattacctcacacaagaggacttatacc 33929199  T
Q  325 atcagagtttattaaatgaatttgaatgtgtatacactttgtactcaaagagtggtaaactaaacttaaggttcaagaaactt 407  Q
    |||| ||||||  |||| |||  || | ||| |||||||| |||| | ||||||| |||| |||||| ||||||||| |||||    
T  33929198 atcaaagtttaacaaataaatgagattctgtttacactttttactaagagagtggcaaacaaaacttgaggttcaagtaactt 33929116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 229 - 271
Target Start/End: Original strand, 27137721 - 27137763
Alignment:
Q  229 actttcaatagatttttcactataatcacacaagattacaatt 271  Q
    |||||||| ||||||||||||||| ||||||||||||||||||    
T  27137721 actttcaagagatttttcactatagtcacacaagattacaatt 27137763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 238 - 274
Target Start/End: Original strand, 17687440 - 17687476
Alignment:
Q  238 agatttttcactataatcacacaagattacaattgct 274  Q
    ||||||||||||||||||||| |||||||||||||||    
T  17687440 agatttttcactataatcacataagattacaattgct 17687476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 238 - 274
Target Start/End: Complemental strand, 24498800 - 24498764
Alignment:
Q  238 agatttttcactataatcacacaagattacaattgct 274  Q
    ||||||| |||||||||||||||||||||||||||||    
T  24498800 agattttccactataatcacacaagattacaattgct 24498764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 228 - 271
Target Start/End: Original strand, 14547725 - 14547767
Alignment:
Q  228 cactttcaatagatttttcactataatcacacaagattacaatt 271  Q
    ||||||||| |||||||| |||||||||||||||||||||||||    
T  14547725 cactttcaagagattttt-actataatcacacaagattacaatt 14547767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 228 - 274
Target Start/End: Original strand, 17879112 - 17879158
Alignment:
Q  228 cactttcaatagatttttcactataatcacacaagattacaattgct 274  Q
    ||||| ||| ||||||||||  |||||||||||||||||||||||||    
T  17879112 cacttacaagagatttttcataataatcacacaagattacaattgct 17879158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 220 - 271
Target Start/End: Original strand, 18529691 - 18529743
Alignment:
Q  220 ttccattgcactttcaatagatttt-tcactataatcacacaagattacaatt 271  Q
    |||| |||||||||||||  ||||| |||||||||||||||||||||| ||||    
T  18529691 ttcctttgcactttcaatgaattttttcactataatcacacaagattataatt 18529743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 62; Significance: 1e-26; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 225 - 406
Target Start/End: Original strand, 30461966 - 30462147
Alignment:
Q  225 ttgcactttcaatagatttttcactataatcacacaagattacaattgcttcaacgcataagttagagacttatttggctcacacaagaggaattttaca 324  Q
    ||||||||||||| |||||||||||||||| |||||||||||||||||||  | | || ||  |  ||||||  ||| |||||||||||||| || || |    
T  30461966 ttgcactttcaatggatttttcactataattacacaagattacaattgctcaagcacacaaaattaagacttccttgtctcacacaagaggacttataaa 30462065  T
Q  325 atcagagtttattaaatgaatttgaatgtgtatacactttgtactcaaagagtggtaaactaaacttaaggttcaagaaact 406  Q
    |||| ||||||| |||| ||||||  ||||| |||||||| || ||| |||||||||||| ||||||||  | |||||||||    
T  30462066 atcatagtttatcaaataaatttgtgtgtgtttacactttataatcagagagtggtaaacaaaacttaaattacaagaaact 30462147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 240 - 388
Target Start/End: Original strand, 18114279 - 18114430
Alignment:
Q  240 atttttcactataatcacacaagattacaattgcttcaacgcataagttagagacttatttggctcacacaagaggaattttacaatcagag-tttatta 338  Q
    |||||||||||||||||||||| ||||||| |||| |||| || ||||| || ||||  ||| |||| ||||||| | || ||||||| ||| |||||||    
T  18114279 atttttcactataatcacacaaaattacaagtgctccaacacacaagtttgaaacttccttgcctcaaacaagagtacttatacaatccgagttttatta 18114378  T
Q  339 aatgaatttgaatgtgtatac--actttgtactcaaagagtggtaaactaaa 388  Q
    ||| | ||||| ||||| |||  |||||||||||||||||||||||||||||    
T  18114379 aataagtttgattgtgtttacgtactttgtactcaaagagtggtaaactaaa 18114430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 240 - 364
Target Start/End: Complemental strand, 27919021 - 27918899
Alignment:
Q  240 atttttcactataatcacacaagattacaattgcttcaacgcataagttagagacttatttggctcacacaagaggaattttacaatcagagtttattaa 339  Q
    |||||||| |||||||||||||||||||||||||| |||  || |||| ||||||||  || ||||| ||||||||| || |||||||||||||||  |     
T  27919021 atttttcattataatcacacaagattacaattgctccaatacacaagtcagagacttcctt-gctcatacaagaggacttatacaatcagagtttaacag 27918923  T
Q  340 atgaatttgaatgtgtatacacttt 364  Q
    || ||||| ||||||| ||||||||    
T  27918922 ataaattt-aatgtgtttacacttt 27918899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 239 - 363
Target Start/End: Complemental strand, 29966990 - 29966866
Alignment:
Q  239 gatttttcactataatcacacaagattacaattgcttcaacgcataagttagagacttatttggctcacacaagaggaattttacaatcagagtttatta 338  Q
    |||||||| ||||||| ||||||||||||||||||| |||| || |||| ||| ||||  ||| |||||||||||||  |  |||||||||||||| | |    
T  29966990 gatttttcgctataattacacaagattacaattgctccaacacacaagtcagatacttccttgcctcacacaagagggctcatacaatcagagtttttca 29966891  T
Q  339 aatgaatttgaatgtgtatacactt 363  Q
    || || ||||| ||||| |||||||    
T  29966890 aaagagtttgattgtgtctacactt 29966866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 228 - 275
Target Start/End: Complemental strand, 16735616 - 16735569
Alignment:
Q  228 cactttcaatagatttttcactataatcacacaagattacaattgctt 275  Q
    ||||| ||| ||||||||||||||||||||||||||||||||||||||    
T  16735616 cacttacaagagatttttcactataatcacacaagattacaattgctt 16735569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 247 - 334
Target Start/End: Complemental strand, 35512710 - 35512623
Alignment:
Q  247 actataatcacacaagattacaattgcttcaacgcataagttagagacttatttggctcacacaagaggaattttacaatcagagttt 334  Q
    |||||||||||| ||||||||||||||| ||||||  |||| ||||||||  ||| || ||||||||||| || |||||||| |||||    
T  35512710 actataatcacataagattacaattgctccaacgcccaagtcagagacttccttgcctaacacaagaggacttctacaatcatagttt 35512623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 228 - 274
Target Start/End: Original strand, 33240190 - 33240236
Alignment:
Q  228 cactttcaatagatttttcactataatcacacaagattacaattgct 274  Q
    ||||| ||| |||||||||||||||||||||||||||||||||||||    
T  33240190 cacttacaagagatttttcactataatcacacaagattacaattgct 33240236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 228 - 274
Target Start/End: Original strand, 33248111 - 33248157
Alignment:
Q  228 cactttcaatagatttttcactataatcacacaagattacaattgct 274  Q
    ||||| ||| |||||||||||||||||||||||||||||||||||||    
T  33248111 cacttacaagagatttttcactataatcacacaagattacaattgct 33248157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 238 - 272
Target Start/End: Complemental strand, 40203003 - 40202969
Alignment:
Q  238 agatttttcactataatcacacaagattacaattg 272  Q
    |||||||||||||||||||||||||||||||||||    
T  40203003 agatttttcactataatcacacaagattacaattg 40202969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 246 - 334
Target Start/End: Complemental strand, 22111365 - 22111276
Alignment:
Q  246 cactataatcacacaagattacaattgcttcaacgcataagttagagacttatttggctcacacaagaggaattttac-aatcagagttt 334  Q
    |||||||||||||||||| ||||||||||  ||  || |||| ||||||||  ||| |||||||||||||| || ||| |||||||||||    
T  22111365 cactataatcacacaagaatacaattgctctaagacacaagtcagagacttgcttgcctcacacaagaggacttctacaaatcagagttt 22111276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 268
Target Start/End: Complemental strand, 16195788 - 16195759
Alignment:
Q  239 gatttttcactataatcacacaagattaca 268  Q
    ||||||||||||||||||||||||||||||    
T  16195788 gatttttcactataatcacacaagattaca 16195759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 61; Significance: 5e-26; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 238 - 401
Target Start/End: Complemental strand, 4123472 - 4123311
Alignment:
Q  238 agatttttcactataatcacacaagattacaattgcttcaacgcataagttagagacttatttggctcacacaagaggaattttacaatcagagtttatt 337  Q
    |||||||||||||||||||||||||||||||||| ||   || || ||||| |||||||  ||| ||||||||||| || || || ||| ||| ||||||    
T  4123472 agatttttcactataatcacacaagattacaatttctcagacacacaagtttgagacttccttgcctcacacaagaagacttataaaattagactttatt 4123373  T
Q  338 aaatgaatttgaatgtgtatacactttgtactcaaagagtggtaaactaaacttaaggttcaag 401  Q
     ||| |||||  | |||| |||||||||||||||||||||||||||| ||| |||| |||||||    
T  4123372 gaataaattt--acgtgtttacactttgtactcaaagagtggtaaacaaaatttaaagttcaag 4123311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 238 - 274
Target Start/End: Complemental strand, 12223129 - 12223093
Alignment:
Q  238 agatttttcactataatcacacaagattacaattgct 274  Q
    |||||||||||||||||||||||||||||||||||||    
T  12223129 agatttttcactataatcacacaagattacaattgct 12223093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 238 - 274
Target Start/End: Original strand, 19416754 - 19416790
Alignment:
Q  238 agatttttcactataatcacacaagattacaattgct 274  Q
    |||||||||||||||||||||||||||||||||||||    
T  19416754 agatttttcactataatcacacaagattacaattgct 19416790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 229 - 334
Target Start/End: Complemental strand, 4514689 - 4514583
Alignment:
Q  229 actttcaatagatttttc-actataatcacacaagattacaattgcttcaacgcataagttagagacttatttggctcacacaagaggaattttacaatc 327  Q
    |||| ||| ||||||||| ||||||||||||||||||| ||||| || |||| || |||| | || |||  ||| |||||||||||||| || ||||||     
T  4514689 acttccaagagatttttccactataatcacacaagattgcaatttctccaacacacaagtcaaagtcttccttgcctcacacaagaggacttatacaatt 4514590  T
Q  328 agagttt 334  Q
    |||||||    
T  4514589 agagttt 4514583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 208 - 271
Target Start/End: Original strand, 31270630 - 31270693
Alignment:
Q  208 aggtcagtctaattccattgcactttcaatagatttttcactataatcacacaagattacaatt 271  Q
    |||| |||||| |||| ||||||||  || |||||||  |||||||||||||||||||||||||    
T  31270630 aggttagtctagttcccttgcacttctaagagattttctactataatcacacaagattacaatt 31270693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 225 - 271
Target Start/End: Complemental strand, 11693683 - 11693637
Alignment:
Q  225 ttgcactttcaatagatttttcactataatcacacaagattacaatt 271  Q
    ||||||||||||  ||||||  |||||||||||||||||||||||||    
T  11693683 ttgcactttcaagggattttcgactataatcacacaagattacaatt 11693637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 341
Target Start/End: Complemental strand, 7145450 - 7145369
Alignment:
Q  260 aagattacaattgcttcaacgcataagttagagacttatttggctcacacaagaggaattttacaatcagagtttattaaat 341  Q
    |||||||||||||||| ||  || |||| | ||||||  ||| ||| |||||||||| ||||||||| ||||||||| ||||    
T  7145450 aagattacaattgcttaaatacacaagtaaaagacttccttgcctcgcacaagaggacttttacaattagagtttatcaaat 7145369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 271
Target Start/End: Original strand, 24677021 - 24677054
Alignment:
Q  238 agatttttcactataatcacacaagattacaatt 271  Q
    |||||||||| |||||||||||||||||||||||    
T  24677021 agatttttcagtataatcacacaagattacaatt 24677054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 238 - 274
Target Start/End: Complemental strand, 3779369 - 3779333
Alignment:
Q  238 agatttttcactataatcacacaagattacaattgct 274  Q
    ||||||||||||||||||| ||| |||||||||||||    
T  3779369 agatttttcactataatcaaacatgattacaattgct 3779333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 231 - 271
Target Start/End: Complemental strand, 5459980 - 5459940
Alignment:
Q  231 tttcaatagatttttcactataatcacacaagattacaatt 271  Q
    |||||| ||| ||||||||||||||| ||||||||||||||    
T  5459980 tttcaagagaattttcactataatcaaacaagattacaatt 5459940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 242 - 274
Target Start/End: Original strand, 9065029 - 9065061
Alignment:
Q  242 ttttcactataatcacacaagattacaattgct 274  Q
    |||||||||||||||| ||||||||||||||||    
T  9065029 ttttcactataatcactcaagattacaattgct 9065061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 242 - 274
Target Start/End: Original strand, 9802642 - 9802674
Alignment:
Q  242 ttttcactataatcacacaagattacaattgct 274  Q
    ||||| |||||||||||||||||||||||||||    
T  9802642 ttttcgctataatcacacaagattacaattgct 9802674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 238 - 274
Target Start/End: Original strand, 20597831 - 20597867
Alignment:
Q  238 agatttttcactataatcacacaagattacaattgct 274  Q
    |||||| |||||||||||| |||||||||||||||||    
T  20597831 agatttgtcactataatcatacaagattacaattgct 20597867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 241 - 285
Target Start/End: Complemental strand, 21634009 - 21633965
Alignment:
Q  241 tttttcactataatcacacaagattacaattgcttcaacgcataa 285  Q
    |||||||||||||||||| ||||||||| ||||| |||| |||||    
T  21634009 tttttcactataatcacagaagattacagttgctccaacacataa 21633965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 4e-20; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 225 - 355
Target Start/End: Original strand, 34487742 - 34487872
Alignment:
Q  225 ttgcactttcaatagatttttcactataatcacacaagattacaattgcttcaacgcataagttagagacttatttggctcacacaagaggaattttaca 324  Q
    |||||||| | || || |||||||||||||||||||||||||||||| || |||| || |||||||||||||  ||  ||||||||||| || || ||||    
T  34487742 ttgcacttcccatggaattttcactataatcacacaagattacaatttctccaacacacaagttagagacttccttaactcacacaagatgacttataca 34487841  T
Q  325 atcagagtttattaaatgaatttgaatgtgt 355  Q
    ||||||||||   |||| |||||| ||||||    
T  34487842 atcagagttttacaaataaatttgtatgtgt 34487872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 228 - 367
Target Start/End: Original strand, 11833002 - 11833141
Alignment:
Q  228 cactttcaatagatttttcactataatcacacaagattacaattgcttcaacgcataagttagagacttatttggctcacacaagaggaattttacaatc 327  Q
    |||||||||| |||||||||||||||| |||||| ||||||||||||  ||| || |||||  ||||||  ||| |||||| |||| || ||||||||||    
T  11833002 cactttcaatggatttttcactataattacacaaaattacaattgctcaaacacacaagttttagacttccttgcctcacataagaagacttttacaatc 11833101  T
Q  328 agagtttattaaatgaatttgaatgtgtatacactttgta 367  Q
    | |||||   ||| ||||||  |||||| |||||||||||    
T  11833102 aaagttttacaaaagaatttatatgtgtgtacactttgta 11833141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 225 - 341
Target Start/End: Complemental strand, 26858839 - 26858722
Alignment:
Q  225 ttgcactttcaatagatttttcactataatcacacaagattacaattgcttcaa-cgcataagttagagacttatttggctcacacaagaggaattttac 323  Q
    |||||||| ||| |||||||||||||||||||||| || ||||||||   |||| | || |||| ||| ||||  ||| |||||||||||||| || |||    
T  26858839 ttgcacttccaaaagatttttcactataatcacactaggttacaattttctcaaacacacaagtaagaaactttcttgactcacacaagaggacttctac 26858740  T
Q  324 aatcagagtttattaaat 341  Q
    ||||||||||||| ||||    
T  26858739 aatcagagtttatcaaat 26858722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 251 - 409
Target Start/End: Complemental strand, 17048734 - 17048576
Alignment:
Q  251 taatcacacaagattacaattgcttcaacgcataagttagagacttatttggctcacacaagaggaattttacaatcagagtttattaaatgaatttgaa 350  Q
    |||||||||||||||||||||  |||||  || |||| ||||||||   || |||||| ||||||| |  |||| ||||||||||  |||  | ||||||    
T  17048734 taatcacacaagattacaattttttcaaaacacaagtcagagacttccctgcctcacagaagaggactcatacagtcagagtttaacaaaaaagtttgaa 17048635  T
Q  351 tgtgtatacacttt-gtactcaaagagtggtaaactaaacttaaggttcaagaaactttt 409  Q
    ||||| |||||||| | ||||| ||||||||||||| | ||| |||| ||||||||||||    
T  17048634 tgtgtttacactttagaactcatagagtggtaaact-agctttaggtacaagaaactttt 17048576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 238 - 274
Target Start/End: Original strand, 18515486 - 18515522
Alignment:
Q  238 agatttttcactataatcacacaagattacaattgct 274  Q
    |||||||||||||||||||||||||||||||||||||    
T  18515486 agatttttcactataatcacacaagattacaattgct 18515522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 241 - 274
Target Start/End: Original strand, 23917325 - 23917358
Alignment:
Q  241 tttttcactataatcacacaagattacaattgct 274  Q
    ||||||||||||||||||||||||||||||||||    
T  23917325 tttttcactataatcacacaagattacaattgct 23917358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 238 - 274
Target Start/End: Original strand, 25398862 - 25398898
Alignment:
Q  238 agatttttcactataatcacacaagattacaattgct 274  Q
    ||||||||||||| |||||||||||||||||||||||    
T  25398862 agatttttcactacaatcacacaagattacaattgct 25398898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 197 - 272
Target Start/End: Complemental strand, 15571012 - 15570937
Alignment:
Q  197 ctcataatccaaggtcagtctaattccattgcactttcaatagatttttcactataatcacacaagattacaattg 272  Q
    |||| ||||| |||| |||| ||| || ||||| |||||  | ||||||||||| |||||||||||||||||||||    
T  15571012 ctcacaatccgaggttagtccaatccccttgcattttcatgaaatttttcactagaatcacacaagattacaattg 15570937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 239 - 269
Target Start/End: Complemental strand, 24154709 - 24154679
Alignment:
Q  239 gatttttcactataatcacacaagattacaa 269  Q
    |||||||||||||||||||||||||||||||    
T  24154709 gatttttcactataatcacacaagattacaa 24154679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 220 - 271
Target Start/End: Complemental strand, 12870705 - 12870654
Alignment:
Q  220 ttccattgcactttcaatagatttttcactataatcacacaagattacaatt 271  Q
    |||| |||||||||||| |||||||| |||||||||||||||||||||||||    
T  12870705 ttcctttgcactttcaagagattttttactataatcacacaagattacaatt 12870654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 343 - 407
Target Start/End: Original strand, 18773566 - 18773629
Alignment:
Q  343 aatttgaatgtgtatacactttgtactcaaagagtggtaaactaaacttaaggttcaagaaactt 407  Q
    ||||||| ||||| ||||||||||||||| |||||||||||||||| |||||| ||||| |||||    
T  18773566 aatttgactgtgtttacactttgtactcatagagtggtaaactaaa-ttaaggctcaagtaactt 18773629  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 228 - 275
Target Start/End: Original strand, 13242694 - 13242741
Alignment:
Q  228 cactttcaatagatttttcactataatcacacaagattacaattgctt 275  Q
    ||||| ||| ||||||||||| ||||||||||||||||||||||||||    
T  13242694 cacttacaagagatttttcacaataatcacacaagattacaattgctt 13242741  T

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Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 238 - 272
Target Start/End: Complemental strand, 31720276 - 31720242
Alignment:
Q  238 agatttttcactataatcacacaagattacaattg 272  Q
    |||||||||||||||||||||||||||||||||||    
T  31720276 agatttttcactataatcacacaagattacaattg 31720242  T

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Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 238 - 274
Target Start/End: Original strand, 14757809 - 14757845
Alignment:
Q  238 agatttttcactataatcacacaagattacaattgct 274  Q
    |||||||||||||||||||||||||||||||| ||||    
T  14757809 agatttttcactataatcacacaagattacaaatgct 14757845  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 228 - 274
Target Start/End: Complemental strand, 12183562 - 12183516
Alignment:
Q  228 cactttcaatagatttttcactataatcacacaagattacaattgct 274  Q
    ||||| ||| |||||||| |||||||||| |||||||||||||||||    
T  12183562 cacttacaagagattttttactataatcatacaagattacaattgct 12183516  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 274
Target Start/End: Complemental strand, 4098299 - 4098245
Alignment:
Q  218 aattccattgcactttcaatagatttttcactataatcacacaagattacaattgct 274  Q
    |||||| |||||||||||||  ||||  ||||| |||||||||||||||||||||||    
T  4098299 aattcctttgcactttcaatgaattt--cactacaatcacacaagattacaattgct 4098245  T

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Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 231 - 267
Target Start/End: Original strand, 33545794 - 33545830
Alignment:
Q  231 tttcaatagatttttcactataatcacacaagattac 267  Q
    |||||| ||||||||||| ||||||||||||||||||    
T  33545794 tttcaagagatttttcacaataatcacacaagattac 33545830  T

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Target: scaffold0340 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0340
Description:

Target: scaffold0340; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 228 - 274
Target Start/End: Original strand, 17446 - 17492
Alignment:
Q  228 cactttcaatagatttttcactataatcacacaagattacaattgct 274  Q
    ||||| ||| |||||||||||||||||||||||||||||||||||||    
T  17446 cacttacaagagatttttcactataatcacacaagattacaattgct 17492  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 343 - 401
Target Start/End: Original strand, 22642020 - 22642078
Alignment:
Q  343 aatttgaatgtgtatacactttgtactcaaagagtggtaaactaaacttaaggttcaag 401  Q
    |||||| |||||| | | ||||||||||||||||||||||||||||||||| |||||||    
T  22642020 aatttgtatgtgtttgctctttgtactcaaagagtggtaaactaaacttaaagttcaag 22642078  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 238 - 274
Target Start/End: Complemental strand, 26119259 - 26119223
Alignment:
Q  238 agatttttcactataatcacacaagattacaattgct 274  Q
    |||||||||||||||||||||||||||||||||||||    
T  26119259 agatttttcactataatcacacaagattacaattgct 26119223  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 225 - 334
Target Start/End: Original strand, 19761143 - 19761253
Alignment:
Q  225 ttgcactttcaatagatttttcactataatcacacaagattacaa-ttgcttcaacgcataagttagagacttatttggctcacacaagaggaattttac 323  Q
    ||||||||||||  |||||||||||||||||||| |||||||||| |||||  |||  |   || ||||||||  ||| |||||||||||||| || |||    
T  19761143 ttgcactttcaagtgatttttcactataatcacataagattacaacttgctcaaacatacgggtaagagacttccttgcctcacacaagaggacttctac 19761242  T
Q  324 aatcagagttt 334  Q
    | |||||||||    
T  19761243 agtcagagttt 19761253  T

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Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 225 - 387
Target Start/End: Complemental strand, 25955138 - 25954980
Alignment:
Q  225 ttgcactttcaatagatttttcactataatcacacaagattacaattgcttcaacgcataagttagagacttatttggctcacacaagaggaattttaca 324  Q
    ||||| |||||| ||| |||||||||||||| |||||||||||||||  ||  || || ||||   ||| ||  ||| || ||||||||||| || ||||    
T  25955138 ttgcattttcaa-agaattttcactataatcgcacaagattacaattatttagacacacaagtctaagatttcattgccttacacaagaggacttctaca 25955040  T
Q  325 atcagagtttattaaatgaatttgaatgtgtatacac-tttgtactcaaagagtggtaaactaa 387  Q
    |||||||||||  |    ||||||||||||| || || ||||||||||||||||| ||||||||    
T  25955039 atcagagtttacaa----aatttgaatgtgtttaaacttttgtactcaaagagtgataaactaa 25954980  T

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Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 238 - 274
Target Start/End: Complemental strand, 17769684 - 17769648
Alignment:
Q  238 agatttttcactataatcacacaagattacaattgct 274  Q
    |||||||||||||||||||||||||||||||||||||    
T  17769684 agatttttcactataatcacacaagattacaattgct 17769648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 238 - 274
Target Start/End: Complemental strand, 19070985 - 19070949
Alignment:
Q  238 agatttttcactataatcacacaagattacaattgct 274  Q
    |||||||||||||||||||||||||||||||||||||    
T  19070985 agatttttcactataatcacacaagattacaattgct 19070949  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 238 - 274
Target Start/End: Complemental strand, 19431936 - 19431900
Alignment:
Q  238 agatttttcactataatcacacaagattacaattgct 274  Q
    |||||||||||||||||||||||||||||||||||||    
T  19431936 agatttttcactataatcacacaagattacaattgct 19431900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 123 - 274
Target Start/End: Original strand, 13494757 - 13494911
Alignment:
Q  123 gttttaacaaaaacagagcaggagataatcagtgag--agagaagaaagacaacataaacaaattattctgg-tcatctcataatccaaggtcagtctaa 219  Q
    ||||| |||||||||||||| ||||||||||| |||  ||||| || |||||||| |||||||||||  ||| ||| |  | ||||  | || |||| |     
T  13494757 gttttgacaaaaacagagcaagagataatcagagagtaagagatgagagacaacacaaacaaattatcatggttcaccctagaatctgaagttagtcaat 13494856  T
Q  220 ttccattgcactttcaatagatttttcactataatcacacaagattacaattgct 274  Q
    | || |||||||| |||  |||||||| ||||||||| |||||||||||||||||    
T  13494857 tccccttgcacttccaaatgatttttcgctataatcaaacaagattacaattgct 13494911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 240 - 274
Target Start/End: Complemental strand, 2121018 - 2120984
Alignment:
Q  240 atttttcactataatcacacaagattacaattgct 274  Q
    |||||||||||||||||||||||||||||| ||||    
T  2121018 atttttcactataatcacacaagattacaactgct 2120984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 271
Target Start/End: Complemental strand, 12412291 - 12412258
Alignment:
Q  238 agatttttcactataatcacacaagattacaatt 271  Q
    |||||||||||||||||||| |||||||||||||    
T  12412291 agatttttcactataatcacgcaagattacaatt 12412258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 242 - 270
Target Start/End: Original strand, 16093920 - 16093948
Alignment:
Q  242 ttttcactataatcacacaagattacaat 270  Q
    |||||||||||||||||||||||||||||    
T  16093920 ttttcactataatcacacaagattacaat 16093948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 238 - 274
Target Start/End: Original strand, 19225286 - 19225322
Alignment:
Q  238 agatttttcactataatcacacaagattacaattgct 274  Q
    ||||||||||| ||||||| |||||||||||||||||    
T  19225286 agatttttcaccataatcaaacaagattacaattgct 19225322  T

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Target: scaffold1339 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold1339
Description:

Target: scaffold1339; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 241 - 275
Target Start/End: Original strand, 1725 - 1759
Alignment:
Q  241 tttttcactataatcacacaagattacaattgctt 275  Q
    |||||||||||||||||||||||||||||||||||    
T  1725 tttttcactataatcacacaagattacaattgctt 1759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0606 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0606
Description:

Target: scaffold0606; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 228 - 274
Target Start/End: Original strand, 4988 - 5034
Alignment:
Q  228 cactttcaatagatttttcactataatcacacaagattacaattgct 274  Q
    ||||| ||| ||||||||||||||||||| |||||||||||||||||    
T  4988 cacttgcaagagatttttcactataatcatacaagattacaattgct 5034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 239 - 335
Target Start/End: Original strand, 3768 - 3864
Alignment:
Q  239 gatttttcactataatcacacaagattacaattgcttcaacgcataagttagagacttatttggctcacacaagaggaattttacaatcagagttta 335  Q
    ||||||||| || |||||||||||||||||| | ||| ||| |||||||| |||| ||  ||| ||||||||||||   || |||||| ||||||||    
T  3768 gatttttcaatacaatcacacaagattacaacttcttaaacacataagtttgagatttccttgcctcacacaagagaccttatacaataagagttta 3864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 225 - 268
Target Start/End: Complemental strand, 9900 - 9857
Alignment:
Q  225 ttgcactttcaatagatttttcactataatcacacaagattaca 268  Q
    |||||||| |||| ||||||||||||||||||||||| ||||||    
T  9900 ttgcacttccaatggatttttcactataatcacacaatattaca 9857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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