View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6921_high_6 (Length: 301)

Name: NF6921_high_6
Description: NF6921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6921_high_6
NF6921_high_6
[»] chr4 (13 HSPs)
chr4 (17-281)||(17743791-17744055)
chr4 (36-256)||(23692826-23693046)
chr4 (33-209)||(19601510-19601688)
chr4 (158-281)||(20748459-20748582)
chr4 (33-247)||(12285800-12286014)
chr4 (37-247)||(16404044-16404254)
chr4 (33-280)||(35150139-35150388)
chr4 (33-149)||(9883035-9883151)
chr4 (121-269)||(16300814-16300969)
chr4 (196-255)||(6116308-6116367)
chr4 (201-259)||(24715764-24715822)
chr4 (159-256)||(17651034-17651131)
chr4 (33-109)||(11700968-11701044)
[»] chr8 (10 HSPs)
chr8 (33-281)||(12843322-12843570)
chr8 (36-242)||(20707003-20707209)
chr8 (33-209)||(18530288-18530464)
chr8 (168-264)||(31288027-31288123)
chr8 (96-259)||(15752942-15753107)
chr8 (33-109)||(17872017-17872093)
chr8 (159-264)||(35103843-35103948)
chr8 (33-281)||(25809377-25809619)
chr8 (33-264)||(10516451-10516675)
chr8 (33-110)||(22881700-22881777)
[»] chr7 (5 HSPs)
chr7 (36-259)||(6414736-6414960)
chr7 (33-256)||(32562281-32562503)
chr7 (33-256)||(32561908-32562130)
chr7 (33-210)||(19650602-19650780)
chr7 (217-269)||(4122775-4122827)
[»] chr5 (4 HSPs)
chr5 (171-264)||(16687235-16687328)
chr5 (46-145)||(16687129-16687228)
chr5 (199-277)||(19990677-19990755)
chr5 (59-111)||(22254413-22254465)
[»] chr1 (8 HSPs)
chr1 (101-269)||(12900295-12900464)
chr1 (36-251)||(20816930-20817141)
chr1 (36-249)||(22669059-22669273)
chr1 (127-269)||(34488413-34488555)
chr1 (76-187)||(12892951-12893062)
chr1 (33-110)||(36754910-36754987)
chr1 (33-111)||(1634937-1635015)
chr1 (33-91)||(12398141-12398199)
[»] chr3 (6 HSPs)
chr3 (52-223)||(4698638-4698807)
chr3 (36-286)||(4596875-4597125)
chr3 (33-111)||(8108803-8108881)
chr3 (54-108)||(20649036-20649090)
chr3 (125-186)||(4668242-4668303)
chr3 (33-101)||(9796538-9796606)
[»] chr6 (1 HSPs)
chr6 (162-256)||(9188052-9188146)
[»] chr2 (6 HSPs)
chr2 (36-110)||(24386338-24386412)
chr2 (33-110)||(26712906-26712983)
chr2 (33-145)||(35511861-35511974)
chr2 (33-84)||(16748091-16748142)
chr2 (33-110)||(25905624-25905701)
chr2 (195-264)||(21538630-21538701)


Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 17 - 281
Target Start/End: Complemental strand, 17744055 - 17743791
Alignment:
Q  17 aatttatacatgtgtattgatgataataatgtatgaaagaataattgaatattctaagatgtgttcaagtatgcaagatcatagaattaaattcagtctt 116  Q
    |||||||||||||||||||||||| ||||||| |||||||||||||| |||||||||||||||||||||||||||||||  |||||||||||||||  ||    
T  17744055 aatttatacatgtgtattgatgatgataatgtgtgaaagaataattggatattctaagatgtgttcaagtatgcaagattgtagaattaaattcagattt 17743956  T
Q  117 caaagttaagttttggttctgatacatcatgctctaaatataaaggaaatcattttggtactcaagagaagcattgaaaacttctgaagacttagcagat 216  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| |||||||||||||||||||||||    
T  17743955 caaagttaagttttggttttgatacatcatgctctaaatataaaggaaatcattttggtattcaagagaagtattggaaacttctgaagacttagcagat 17743856  T
Q  217 gatctgaaaaaaggtcaacaaaaagtcaaagctctgatcagaaaatgtatcaatccttgaagact 281  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17743855 gatctgaagaaaggtcaacaaaaagtcaaagctctgatcagaaaatgtatcaatccttgaagact 17743791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 36 - 256
Target Start/End: Complemental strand, 23693046 - 23692826
Alignment:
Q  36 atgataataatgtatgaaagaataattgaatattctaagatgtgttcaagtatgcaagatcatagaattaaattcagtcttcaaagttaagttttggttc 135  Q
    ||||||| ||||||||||| || |||||  || |||||  ||||||||||   |||||| |||| |||||||||| | ||||||| |||| |||||||||    
T  23693046 atgataacaatgtatgaaataacaattgggtactctaatgtgtgttcaagcgagcaagaccatataattaaattctgacttcaaaattaaattttggttc 23692947  T
Q  136 tgatacatcatgctctaaatataaaggaaatcattttggtactcaagagaagcattgaaaacttctgaagacttagcagatgatctgaaaaaaggtcaac 235  Q
    |||||||||| ||||| |  | ||||||||  | | ||||||||||||||||||||| |||||||| | ||||||| ||| ||| |||| |||||||| |    
T  23692946 tgatacatcaagctctgagcacaaaggaaagtagtatggtactcaagagaagcattggaaacttctaatgacttagaagacgatatgaagaaaggtcagc 23692847  T
Q  236 aaaaagtcaaagctctgatca 256  Q
    | |||||||||||| ||||||    
T  23692846 agaaagtcaaagctttgatca 23692826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 33 - 209
Target Start/End: Original strand, 19601510 - 19601688
Alignment:
Q  33 ttgatgataataatgtatgaaagaataattgaatattctaagatgtgttcaagtatgcaagatcatagaattaaattcagtcttcaaagttaag-ttttg 131  Q
    ||||||||||||||||||||| |||||||||| |||| ||| |||| |||||||||||| ||||||| |||||||||| |  || ||| | ||| |||||    
T  19601510 ttgatgataataatgtatgaatgaataattgagtattgtaacatgtattcaagtatgcaggatcatataattaaattctgaatttaaaatcaagtttttg 19601609  T
Q  132 gttctgatacatcatgctctaaatataaaggaaat-cattttggtactcaagagaagcattgaaaacttctgaagactt 209  Q
    ||||| |||||||| ||||||| || ||||||| | |||||| |||||||||||||||| || |||||||| |||||||    
T  19601610 gttctaatacatcaagctctaattagaaaggaattgcattttagtactcaagagaagcaatggaaacttcttaagactt 19601688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 158 - 281
Target Start/End: Complemental strand, 20748582 - 20748459
Alignment:
Q  158 aaaggaaatcattttggtactcaagagaagcattgaaaacttctgaagacttagcagatgatctgaaaaaaggtcaacaaaaagtcaaagctctgatcag 257  Q
    |||||||| |||||||||||||||||||||||||| |||||||||||||||||  ||||||||||||||||||| || ||||||| |||||| |||| ||    
T  20748582 aaaggaaagcattttggtactcaagagaagcattggaaacttctgaagacttaaaagatgatctgaaaaaaggttaataaaaagttaaagctttgattag 20748483  T
Q  258 aaaatgtatcaatccttgaagact 281  Q
    || ||| ||||| ||| |||||||    
T  20748482 aagatgcatcaagcctcgaagact 20748459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 33 - 247
Target Start/End: Original strand, 12285800 - 12286014
Alignment:
Q  33 ttgatgataataatgtatgaaagaataattgaatattctaagatgtgttcaagtatgcaagatcatagaattaaattcagtcttcaaagttaagttttgg 132  Q
    |||||||||| |||||| ||||||| |||||  || |||||  ||| |||||||   ||||| |||| |||| ||||  | ||||||| |||| ||||||    
T  12285800 ttgatgataacaatgtaagaaagaacaattgggtactctaatgtgttttcaagtgcacaagaccatataattgaattttgacttcaaatttaaattttgg 12285899  T
Q  133 ttctgatacatcatgctctaaatataaaggaaatcattttggtactcaagagaagcattgaaaacttctgaagacttagcagatgatctgaaaaaaggtc 232  Q
    || |||||||||| ||||  |  |||||||||| |||| |||||||||||||||||| || |||| | ||||||||||| ||||||| |||| |||||||    
T  12285900 ttttgatacatcaagctccgagcataaaggaaagcattatggtactcaagagaagcactggaaacctttgaagacttagaagatgatatgaagaaaggtc 12285999  T
Q  233 aacaaaaagtcaaag 247  Q
    || ||||||||||||    
T  12286000 aataaaaagtcaaag 12286014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 37 - 247
Target Start/End: Original strand, 16404044 - 16404254
Alignment:
Q  37 tgataataatgtatgaaagaataattgaatattctaagatgtgttcaagtatgcaagatcatagaattaaattcagtcttcaaagttaagttttggttct 136  Q
    |||||| ||||||||||| ||||||| |||| |||||  ||| ||||| | | | |||||||| | |||||||  |  |||||| | || ||||||||||    
T  16404044 tgataacaatgtatgaaataataatttaatactctaatgtgtcttcaaatgttcgagatcataaatttaaattttgaattcaaaatcaaattttggttct 16404143  T
Q  137 gatacatcatgctctaaatataaaggaaatcattttggtactcaagagaagcattgaaaacttctgaagacttagcagatgatctgaaaaaaggtcaaca 236  Q
    |||||   | ||||| || ||||||||||  ||||||||||||||||||| ||||| |||||||| || |||||| |||||||||||| |||||||||||    
T  16404144 gatactctaagctctgaacataaaggaaagtattttggtactcaagagaaacattggaaacttctaaaaacttagaagatgatctgaagaaaggtcaaca 16404243  T
Q  237 aaaagtcaaag 247  Q
    |||||| ||||    
T  16404244 aaaagttaaag 16404254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 33 - 280
Target Start/End: Original strand, 35150139 - 35150388
Alignment:
Q  33 ttgatgataataatgtatgaaagaataattgaatattctaagatgtgttcaagtatgcaagatcatagaattaaattcagtcttcaaagttaagtt-ttg 131  Q
    |||||||||| ||||||||||| || |||||| || | ||   ||||||||||  ||||| | |||| || ||||||| | ||||||||| ||||| |||    
T  35150139 ttgatgataacaatgtatgaaataacaattgagtactttagtgtgtgttcaagggtgcaataccataaaactaaattctgacttcaaagtcaagttgttg 35150238  T
Q  132 gttctgatacatcatgctctaaatataa-aggaaatcattttggtactcaagagaagcattgaaaacttctgaagacttagcagatgatctgaaaaaagg 230  Q
    ||||||| |||||| ||||| ||   || |  ||| || |||||||||||||||| ||   ||| | |||||||||||||| ||||||| |||| |||||    
T  35150239 gttctgaaacatcaagctctgaacgcaagaaaaaaacactttggtactcaagagatgctaagaagatttctgaagacttagaagatgatatgaagaaagg 35150338  T
Q  231 tcaacaaaaagtcaaagctctgatcagaaaatgtatcaatccttgaagac 280  Q
    |||||||||| | |||| |||||| |||| ||| ||||| | ||||||||    
T  35150339 tcaacaaaaaattaaagttctgattagaagatgcatcaaactttgaagac 35150388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 33 - 149
Target Start/End: Original strand, 9883035 - 9883151
Alignment:
Q  33 ttgatgataataatgtatgaaagaataattgaatattctaagatgtgttcaagtatgcaagatcatagaattaaattcagtcttcaaagttaagttttgg 132  Q
    |||||| ||| |||||||||||||| ||||||||| |||||  |||||| |||| ||||  | |||| ||||||||| || ||||||||| |  ||||||    
T  9883035 ttgatggtaaaaatgtatgaaagaacaattgaatactctaatttgtgtttaagtgtgcactaccataaaattaaattaagacttcaaagtcagtttttgg 9883134  T
Q  133 ttctgatacatcatgct 149  Q
    |||||||||||||||||    
T  9883135 ttctgatacatcatgct 9883151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 121 - 269
Target Start/End: Original strand, 16300814 - 16300969
Alignment:
Q  121 gttaagttttggttctgatacatcatg----ctctaaatataaaggaaatcattttggtactcaagagaag-----cattgaaaacttctgaagacttag 211  Q
    ||||||||||||||||||||||||| |    || | ||||||||||||| |||||| ||||||||||||||     |||||| |  ||||||||||||||    
T  16300814 gttaagttttggttctgatacatcacgtcggctttgaatataaaggaaagcattttagtactcaagagaagagaagcattgagat-ttctgaagacttag 16300912  T
Q  212 cagatgatctgaaaaaaggtcaacaaaaagtcaaagctctgatcagaaaatgtatcaa 269  Q
     |||| || |||||||| || || |||||||||||| |||  |||||| ||| |||||    
T  16300913 aagataatatgaaaaaatgttaa-aaaaagtcaaagttcttctcagaagatgcatcaa 16300969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 196 - 255
Target Start/End: Complemental strand, 6116367 - 6116308
Alignment:
Q  196 acttctgaagacttagcagatgatctgaaaaaaggtcaacaaaaagtcaaagctctgatc 255  Q
    |||| |||||||||||  |||| |||||| ||||||||||||||||| |||||| |||||    
T  6116367 acttttgaagacttagacgatggtctgaagaaaggtcaacaaaaagtaaaagctatgatc 6116308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 201 - 259
Target Start/End: Original strand, 24715764 - 24715822
Alignment:
Q  201 tgaagacttagcagatgatctgaaaaaaggtcaacaaaaagtcaaagctctgatcagaa 259  Q
    ||||||||||| ||||| |||||| ||||||||| ||||||| |||||| |||| ||||    
T  24715764 tgaagacttagaagatggtctgaagaaaggtcaataaaaagtaaaagctttgattagaa 24715822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 256
Target Start/End: Original strand, 17651034 - 17651131
Alignment:
Q  159 aaggaaatcattttggtactcaagagaagcattgaaaacttctgaagacttagcagatgatctgaaaaaaggtcaacaaaaagtcaaagctctgatca 256  Q
    ||||||| |||| ||||||||||||||||||||| |||| | ||| || ||   ||| ||||| || |||||| || | |||||||||||||| ||||    
T  17651034 aaggaaagcattatggtactcaagagaagcattggaaacatatgatgatttgaaagaagatctaaagaaaggtaaagataaagtcaaagctcttatca 17651131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 33 - 109
Target Start/End: Complemental strand, 11701044 - 11700968
Alignment:
Q  33 ttgatgataataatgtatgaaagaataattgaatattctaagatgtgttcaagtatgcaagatcatagaattaaatt 109  Q
    ||||| |||| || ||||||||||||||||  ||||  ||| || ||||||||||||||  || |||||||||||||    
T  11701044 ttgataataacaaagtatgaaagaataattagatatgttaatatttgttcaagtatgcataattatagaattaaatt 11700968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 86; Significance: 4e-41; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 33 - 281
Target Start/End: Complemental strand, 12843570 - 12843322
Alignment:
Q  33 ttgatgataataatgtatgaaagaataattgaatattctaagatgtgttcaagtatgcaagatcatagaattaaattcagtcttcaaagttaag-ttttg 131  Q
    ||||||||||||||||||||||||||||||| |||  ||||  ||||||||||| |||| || |||| |||||||||| | ||||||||| | | |||||    
T  12843570 ttgatgataataatgtatgaaagaataattggatacgctaatgtgtgttcaagtgtgcaggaccatataattaaattctgacttcaaagtcatgcttttg 12843471  T
Q  132 gttctgatacatcatgctctaaatataaaggaaatcattttggtactcaagagaagcattgaaaacttctgaagacttagcagatgatctgaaaaaaggt 231  Q
    ||| ||||||||||| |||| ||   |||| ||| |||||||||||||| ||||||||| |  |||||||||||||||   ||||||| |||  |||| |    
T  12843470 gttatgatacatcatactctgaactcaaagaaaaacattttggtactcaggagaagcatag-gaacttctgaagacttgaaagatgatatgaggaaagat 12843372  T
Q  232 caacaaaaagtcaaagctctgatcagaaaatgtatcaatccttgaagact 281  Q
    |||||||||| |||||||| ||||| || ||| ||||| |||||||||||    
T  12843371 caacaaaaaggcaaagctccgatcataagatgcatcaagccttgaagact 12843322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 36 - 242
Target Start/End: Complemental strand, 20707209 - 20707003
Alignment:
Q  36 atgataataatgtatgaaagaataattgaatattctaagatgtgttcaagtatgcaagatcatagaattaaattcagtcttcaaagttaagttttggttc 135  Q
    ||||||| ||||| |||||||| ||||  ||| |||||  ||||||||||| || | || |||| ||| ||||   | ||||||||| ||||||||||||    
T  20707209 atgataacaatgtttgaaagaacaattagatactctaatgtgtgttcaagtgtgtaggaccatataatcaaatcatgacttcaaagtcaagttttggttc 20707110  T
Q  136 tgatacatcatgctctaaatataaaggaaatcattttggtactcaagagaagcattgaaaacttctgaagacttagcagatgatctgaaaaaaggtcaac 235  Q
    | ||||||||  |||| ||| |||| |||| |||||||||||||| |||||||  |||| ||||||||||||||||  |||||| |||| | |||||||     
T  20707109 taatacatcaaactctgaatgtaaatgaaagcattttggtactcatgagaagctatgaagacttctgaagacttagaggatgatatgaagataggtcaat 20707010  T
Q  236 aaaaagt 242  Q
    |||||||    
T  20707009 aaaaagt 20707003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 33 - 209
Target Start/End: Complemental strand, 18530464 - 18530288
Alignment:
Q  33 ttgatgataataatgtatgaaagaataattgaatattctaagatgtgttcaagtatgcaagatcatagaattaaattcagtcttcaaagttaagttttgg 132  Q
    |||||||||| ||||||| ||| |||||||   || |||||  |||| |||||||||||||| |||| ||||||||||   ||| || ||  ||||||      
T  18530464 ttgatgataacaatgtattaaaaaataatttggtactctaatgtgtgatcaagtatgcaagaccatataattaaattctaacttaaaggtcgagttttaa 18530365  T
Q  133 ttctgatacatcatgctctaaatataaaggaaatcattttggtactcaagagaagcattgaaaacttctgaagactt 209  Q
    ||||||||||||| |||||||  | |||||||| |||||| |||| ||||| ||||||||  |||||||||||||||    
T  18530364 ttctgatacatcaagctctaagcacaaaggaaaacatttttgtacacaagaaaagcattggtaacttctgaagactt 18530288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 168 - 264
Target Start/End: Complemental strand, 31288123 - 31288027
Alignment:
Q  168 attttggtactcaagagaagcattgaaaacttctgaagacttagcagatgatctgaaaaaaggtcaacaaaaagtcaaagctctgatcagaaaatgt 264  Q
    |||||||||||||||| |||||| | |||||||||||||||||| ||||||| | || |||||| |||| ||||||||||||||||| |||| ||||    
T  31288123 attttggtactcaagaaaagcatgggaaacttctgaagacttagaagatgatataaagaaaggtgaacataaagtcaaagctctgataagaagatgt 31288027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 96 - 259
Target Start/End: Complemental strand, 15753107 - 15752942
Alignment:
Q  96 catagaattaaattcagtcttcaaagttaagtt-ttggttctgatacatcatgctctaaatataaaggaaatcattttggtactcaagagaagcattgaa 194  Q
    |||| |||||||||  | ||||||||| | ||| |||||| ||||| |||| ||||| ||   |||||||| ||  ||||||||||||| ||||  ||||    
T  15753107 catataattaaattttgacttcaaagtcatgttattggttatgatatatcaagctctgaacccaaaggaaagcacgttggtactcaagaaaagctatgaa 15753008  T
Q  195 aacttctgaagacttagcagatgatctgaaaaaaggtcaaca-aaaagtcaaagctctgatcagaa 259  Q
     |||| | | ||||||  |||||||||||| ||||||||||| |||||| ||||||||||||||||    
T  15753007 gacttataatgacttataagatgatctgaagaaaggtcaacaaaaaagttaaagctctgatcagaa 15752942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 33 - 109
Target Start/End: Original strand, 17872017 - 17872093
Alignment:
Q  33 ttgatgataataatgtatgaaagaataattgaatattctaagatgtgttcaagtatgcaagatcatagaattaaatt 109  Q
    |||||||||| ||||||| |||||| ||||  |||| ||||  |||||||||||||||| |||||||||||||||||    
T  17872017 ttgatgataacaatgtataaaagaacaatttgatatgctaatttgtgttcaagtatgcaggatcatagaattaaatt 17872093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 159 - 264
Target Start/End: Original strand, 35103843 - 35103948
Alignment:
Q  159 aaggaaatcattttggtactcaagagaagcattgaaaacttctgaagacttagcagatgatctgaaaaaaggtcaacaaaaagtcaaagctctgatcaga 258  Q
    ||||||| |||| |||||||||| | ||| |||| ||  || |||||| |||| ||||||| |||||||| ||||| ||||| ||||||||||| | |||    
T  35103843 aaggaaagcattatggtactcaataaaagtattggaattttatgaagaattagaagatgatatgaaaaaatgtcaagaaaaaatcaaagctctggttaga 35103942  T
Q  259 aaatgt 264  Q
    ||||||    
T  35103943 aaatgt 35103948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 33 - 281
Target Start/End: Complemental strand, 25809619 - 25809377
Alignment:
Q  33 ttgatgataataatgtatgaaagaataattgaatattctaagatgtgttcaagtatgcaagatcatagaattaaattcagtcttcaaagttaagtt-ttg 131  Q
    |||||| ||| || |||| |||||||||||| ||| |||||  ||||||| ||| |||  ||  ||| |||||||| | | ||||| ||| ||||| |||    
T  25809619 ttgatgttaacaaagtataaaagaataattggatactctaatgtgtgttcgagtgtgccggactatataattaaatcccgacttcatagtcaagttattg 25809520  T
Q  132 gttctgatacatcatgctctaaatataaaggaaatcattttggtactc-aagagaagcattgaaaacttctgaagacttagcagatgatctgaaaaaagg 230  Q
     || ||| |||||| |||||||| | ||| |||| ||||||||||| | |||||||||        ||||||||||||||| ||||||| |||| ||| |    
T  25809519 cttttgaaacatcaagctctaaagacaaatgaaagcattttggtaccccaagagaagct-------cttctgaagacttagaagatgatttgaagaaa-g 25809428  T
Q  231 tcaacaaaaagtcaaagctctgatcagaaaatgtatcaatccttgaagact 281  Q
     |||||||||||||||  ||||| ||||| ||| || || |||| ||||||    
T  25809427 acaacaaaaagtcaaatatctgaacagaagatgcattaagccttcaagact 25809377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 264
Target Start/End: Original strand, 10516451 - 10516675
Alignment:
Q  33 ttgatgataataatgtatgaaagaataattgaatattctaagatgtgttcaagtatgcaagatcatagaattaaattcagtcttcaaagttaagtt-ttg 131  Q
    |||||||||| |||||||||||||||  ||   || ||||| ||||| ||||| |||||  || ||||||||||||||   | ||||||| ||||| |||    
T  10516451 ttgatgataacaatgtatgaaagaatgttttcgtactctaatatgtgctcaagaatgcagtataatagaattaaattctaacatcaaagtcaagttcttg 10516550  T
Q  132 gttctgatacatcatgctctaaatataaaggaaatcattttggtactcaagagaagcattgaaaacttctgaagacttagcagatgatctgaaaaaaggt 231  Q
     ||||||||||||| | ||| |  | || ||||| ||||       ||||||||| |||||||||||| | ||| | ||| |||||||    | ||||||    
T  10516551 attctgatacatcaagttcttagcacaatggaaagcatt-------tcaagagaaacattgaaaacttttaaaggcatagaagatgatacagagaaaggt 10516643  T
Q  232 caacaaaaagtcaaagctctgatcagaaaatgt 264  Q
    ||||| ||||||||| |||||||||||| ||||    
T  10516644 caacataaagtcaaa-ctctgatcagaagatgt 10516675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 110
Target Start/End: Complemental strand, 22881777 - 22881700
Alignment:
Q  33 ttgatgataataatgtatgaaagaataattgaatattctaagatgtgttcaagtatgcaagatcatagaattaaattc 110  Q
    |||||||||||||| |||||||||| ||||| ||| |||||  ||||||| ||| || | || |||| ||||||||||    
T  22881777 ttgatgataataatatatgaaagaacaattggatactctaatgtgtgttctagtgtgtatgaccatataattaaattc 22881700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 65; Significance: 1e-28; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 36 - 259
Target Start/End: Complemental strand, 6414960 - 6414736
Alignment:
Q  36 atgataataatgtatgaaagaataattgaatattctaagatgtgttcaagtatgcaagatcatagaattaaattcagtcttcaaagttaagtt-ttggtt 134  Q
    ||||||| ||||||||||||||||||||  || ||||| |||  ||||||| |||| ||  ||| |||||||||  | ||||||||||||||| ||||||    
T  6414960 atgataacaatgtatgaaagaataattgggtactctaatatgcattcaagtgtgcaggacgatataattaaattatgacttcaaagttaagttattggtt 6414861  T
Q  135 ctgatacatcatgctctaaatataaaggaaatcattttggtactcaagagaagcattgaaaacttctgaagacttagcagatgatctgaaaaaaggtcaa 234  Q
     ||| |||||| ||||  ||   |||| ||| ||||||||||||||||| ||||   |||||||| ||||||||||  |||| || ||||  ||||||||    
T  6414860 ttgaaacatcaagctccgaacgcaaagaaaaacattttggtactcaagaaaagctaagaaaacttttgaagacttacaagattatatgaagtaaggtcaa 6414761  T
Q  235 caaaaagtcaaagctctgatcagaa 259  Q
    |||||| |||||||| |||||||||    
T  6414760 caaaaaatcaaagctatgatcagaa 6414736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 33 - 256
Target Start/End: Original strand, 32562281 - 32562503
Alignment:
Q  33 ttgatgataataatgtatgaaagaataattgaatattctaagatgtgttcaagtatgcaagatcatagaattaaattcagtcttcaaagttaagttttg- 131  Q
    |||||||||||| ||||||||| ||||||| |||| |||||  | |||| ||||||| || | |||| |||||||||| | ||||||||| || ||||      
T  32562281 ttgatgataata-tgtatgaaa-aataatttaatactctaatgtatgtttaagtatgtaaaaccatataattaaattctgacttcaaagtcaaatttttt 32562378  T
Q  132 gttctgatacatcatgctctaaatataaaggaaatcattttggtactcaagagaagcattgaaaacttctgaagacttagcagatgatctgaaaaaaggt 231  Q
    ||||||| | |||| ||| | ||   || ||||| |||||||||||| |||||||||||| ||||||||||||||||| | ||||||||| || ||||||    
T  32562379 gttctgacatatcaagctttgaacgcaagggaaaacattttggtacttaagagaagcattaaaaacttctgaagactttgtagatgatctaaagaaaggt 32562478  T
Q  232 caacaaaaagtcaaagctctgatca 256  Q
    ||||| ||||| |||||||| ||||    
T  32562479 caacataaagtaaaagctctcatca 32562503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 33 - 256
Target Start/End: Original strand, 32561908 - 32562130
Alignment:
Q  33 ttgatgataataatgtatgaaagaataattgaatattctaagatgtgttcaagtatgcaagatcatagaattaaattcagtcttcaaagttaagttttg- 131  Q
    |||||||||||| ||||||||| ||||||| |||| |||||  | |||| ||||||| | || |||| |||||||||| | ||||||||| || ||||      
T  32561908 ttgatgataata-tgtatgaaa-aataatttaatactctaatgtatgtttaagtatgtaggaccatataattaaattctgacttcaaagtcaaatttttt 32562005  T
Q  132 gttctgatacatcatgctctaaatataaaggaaatcattttggtactcaagagaagcattgaaaacttctgaagacttagcagatgatctgaaaaaaggt 231  Q
    ||||| | | |||| ||| | ||   || ||||| |||||||||||| |||||||||||| ||||||||||||||||| | ||||||||| || ||||||    
T  32562006 gttctaacatatcaagctttgaacgcaagggaaaacattttggtacttaagagaagcattaaaaacttctgaagacttggtagatgatctaaagaaaggt 32562105  T
Q  232 caacaaaaagtcaaagctctgatca 256  Q
    ||||| ||||| |||||||| ||||    
T  32562106 caacataaagtaaaagctctcatca 32562130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 33 - 210
Target Start/End: Complemental strand, 19650780 - 19650602
Alignment:
Q  33 ttgatgataataatgtatgaaagaataattgaatattctaagatgtgttcaagtatgcaagatcatagaattaaattcagtcttcaaagttaagtttt-g 131  Q
    |||||||||||||||||||||| || |||||  ||  ||||   |||||||||| || | || |||| |||| |||||   ||||| | | ||||||| |    
T  19650780 ttgatgataataatgtatgaaataaaaattgggtaccctaatgcgtgttcaagtgtgtatgaccatataattgaattctaacttcagattcaagtttttg 19650681  T
Q  132 gttctgatacatcatgctctaaatataaaggaaatcattttggtactcaagagaagcattgaaaacttctgaagactta 210  Q
    ||||| ||| |||| ||||| || | |||||||| ||||||||||||||||||||||  |||| |||||| ||||||||    
T  19650680 gttctaatatatcaagctctgaacacaaaggaaaacattttggtactcaagagaagctatgaagacttctaaagactta 19650602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 217 - 269
Target Start/End: Original strand, 4122775 - 4122827
Alignment:
Q  217 gatctgaaaaaaggtcaacaaaaagtcaaagctctgatcagaaaatgtatcaa 269  Q
    |||||||| ||||||||| | |||||||||| ||||||||||| ||| |||||    
T  4122775 gatctgaagaaaggtcaatagaaagtcaaagttctgatcagaagatgcatcaa 4122827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 62; Significance: 8e-27; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 171 - 264
Target Start/End: Original strand, 16687235 - 16687328
Alignment:
Q  171 ttggtactcaagagaagcattgaaaacttctgaagacttagcagatgatctgaaaaaaggtcaacaaaaagtcaaagctctgatcagaaaatgt 264  Q
    |||||||||||||||||||||| |||||||||||||||||  ||||||| |||| | | |||||||||||||||||||||||||||||| ||||    
T  16687235 ttggtactcaagagaagcattggaaacttctgaagacttataagatgatatgaagataagtcaacaaaaagtcaaagctctgatcagaatatgt 16687328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 46 - 145
Target Start/End: Original strand, 16687129 - 16687228
Alignment:
Q  46 tgtatgaaagaataattgaatattctaagatgtgttcaagtatgcaagatcatagaattaaattcagtcttcaaagttaagttttggttctgatacatca 145  Q
    ||||||||||||||||||  || |||||  |||||| |||| ||||||| ||||||||||||||  | ||| ||||  || |||||||| ||||||||||    
T  16687129 tgtatgaaagaataattgggtactctaatgtgtgtttaagtgtgcaagaccatagaattaaattatgacttgaaagacaacttttggttatgatacatca 16687228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 199 - 277
Target Start/End: Complemental strand, 19990755 - 19990677
Alignment:
Q  199 tctgaagacttagcagatgatctgaaaaaaggtcaacaaaaagtcaaagctctgatcagaaaatgtatcaatccttgaa 277  Q
    ||||||||||||| |||||||| ||| ||||||| |||||||  |||| |||||||||||| ||| || || |||||||    
T  19990755 tctgaagacttagaagatgatcagaagaaaggtcgacaaaaaaacaaaactctgatcagaagatgcattaagccttgaa 19990677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 111
Target Start/End: Complemental strand, 22254465 - 22254413
Alignment:
Q  59 aattgaatattctaagatgtgttcaagtatgcaagatcatagaattaaattca 111  Q
    ||||||||||  ||| |||||||| ||| |||||| |||||||||||||||||    
T  22254465 aattgaatataataatatgtgttcgagtgtgcaagttcatagaattaaattca 22254413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 62; Significance: 8e-27; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 101 - 269
Target Start/End: Original strand, 12900295 - 12900464
Alignment:
Q  101 aattaaattcagtcttcaaagttaagttttggttctgatacatcatgctctaaatataaaggaaatcattttggtactcaagagaagcattgaaaacttc 200  Q
    |||||||||  | ||| |||||||| |||||||| |||||||||| ||| | |||  |||||||| || |||||||||||| |||||  ||||| |||||    
T  12900295 aattaaattttgactttaaagttaaattttggttttgatacatcaagctatgaatgcaaaggaaagcactttggtactcaaaagaagttttgaagacttc 12900394  T
Q  201 tgaagacttagcagatgatctgaaaaaaggtcaac-aaaaagtcaaagctctgatcagaaaatgtatcaa 269  Q
    | ||||||||| |||||||||||| |||||||||| ||||||| |||| |||||||| || ||| |||||    
T  12900395 taaagacttagaagatgatctgaagaaaggtcaacaaaaaagttaaagttctgatcataatatgcatcaa 12900464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 36 - 251
Target Start/End: Original strand, 20816930 - 20817141
Alignment:
Q  36 atgataataatgtatgaaagaataattgaatattctaagatgtgttcaagtatgcaagatcatagaattaaattcagtcttcaaagttaagttttggttc 135  Q
    ||||||| |||||||||||||| ||||||||| | |||  |||||| |||| |||| || |||| |||||||||| |  |||||||| ||||||||||||    
T  20816930 atgataacaatgtatgaaagaacaattgaatact-taatgtgtgttgaagtgtgcaggaccataaaattaaattctgaattcaaagtcaagttttggttc 20817028  T
Q  136 tgatacatcatgctctaaatataaaggaaatcattttggtactcaagagaagcattgaaaacttctgaagacttagcagatgatctgaaaaaaggtcaac 235  Q
    |||||||||| | ||  || | | |  ||||||| |||||||||||||||| |   ||| |||| ||||||   || |||||||||||| ||| ||||||    
T  20817029 tgatacatcaagttccgaacagata--aaatcatattggtactcaagagaaactaggaagactt-tgaagatagagaagatgatctgaagaaatgtcaac 20817125  T
Q  236 aaaaagtcaaagctct 251  Q
    ||||||||||||||||    
T  20817126 aaaaagtcaaagctct 20817141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 36 - 249
Target Start/End: Original strand, 22669059 - 22669273
Alignment:
Q  36 atgataataatgtatgaaagaataattgaatattctaagatgtgttcaagtatgcaagatcatagaattaaattcagtcttcaaagttaagtttt-ggtt 134  Q
    ||||||| |||||||||||||| ||||   || ||||| || ||||||||| |||| || |||| |||||||||  | |||||| || ||||||| ||||    
T  22669059 atgataacaatgtatgaaagaagaatttggtactctaatatttgttcaagtgtgcaggaccatataattaaattttgacttcaaggtcaagtttttggtt 22669158  T
Q  135 ctgatacatcatgctctaaatataaaggaaatcattttggtactcaagagaagcattgaaaacttctgaagacttagcagatgatctgaaaaaaggtcaa 234  Q
     ||||||||||   | | |  | || ||||| |||| || ||| ||||||||||||||||||||||||||||||||| ||||||||  |  |||||||||    
T  22669159 atgatacatcaaattttgagcacaatggaaaacattatgatacgcaagagaagcattgaaaacttctgaagacttagaagatgatccaatgaaaggtcaa 22669258  T
Q  235 caaaaagtcaaagct 249  Q
    || ||| ||||||||    
T  22669259 cataaattcaaagct 22669273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 127 - 269
Target Start/End: Complemental strand, 34488555 - 34488413
Alignment:
Q  127 ttttggttctgatacatcatgctctaaatataaaggaaatcattttggtactcaagagaagcattgaaaacttctgaagacttagcagatgatctgaaaa 226  Q
    |||||||| |||||||||| ||||| |||| |||| ||| || |||||||||||| |||| ||||   ||||||||||||  ||| |||| ||||||| |    
T  34488555 ttttggttatgatacatcaagctctgaatacaaagaaaagcaatttggtactcaaaagaaacattagtaacttctgaagaactagaagattatctgaaga 34488456  T
Q  227 aaggtcaacaaaaagtcaaagctctgatcagaaaatgtatcaa 269  Q
    || |||||| |||||||||| |||||||||||| ||| |||||    
T  34488455 aaagtcaacgaaaagtcaaatctctgatcagaagatgcatcaa 34488413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 76 - 187
Target Start/End: Original strand, 12892951 - 12893062
Alignment:
Q  76 tgtgttcaagtatgcaagatcatagaattaaattcagtcttcaaagttaagttttggttctgatacatcatgctctaaatataaaggaaatcattttggt 175  Q
    ||||||||||| || | || |||| |||||||||  | ||||||||| | |||||||||||||||||||| |||  ||| | ||||||||  ||||||||    
T  12892951 tgtgttcaagtgtgtaggaccatataattaaattttgacttcaaagtcatgttttggttctgatacatcaagctagaaacacaaaggaaagtattttggt 12893050  T
Q  176 actcaagagaag 187  Q
    |||||| |||||    
T  12893051 actcaaaagaag 12893062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 33 - 110
Target Start/End: Original strand, 36754910 - 36754987
Alignment:
Q  33 ttgatgataataatgtatgaaagaataattgaatattctaagatgtgttcaagtatgcaagatcatagaattaaattc 110  Q
    |||||||||| |||||||||||||| ||||| ||| |||||   |||||||||| |||| ||||||| ||||| ||||    
T  36754910 ttgatgataacaatgtatgaaagaacaattggatactctaacgcgtgttcaagtgtgcaggatcataaaattatattc 36754987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 111
Target Start/End: Original strand, 1634937 - 1635015
Alignment:
Q  33 ttgatgataataatgtatgaaagaataattgaatattctaagatgtgttcaagtatgcaagatcatagaattaaattca 111  Q
    ||||||||||||| |||| |  ||| ||||| |||  |||| |||||||||||| |||| || ||||||||||||||||    
T  1634937 ttgatgataataaggtataagtgaacaattggataggctaatatgtgttcaagtgtgcaggagcatagaattaaattca 1635015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 91
Target Start/End: Complemental strand, 12398199 - 12398141
Alignment:
Q  33 ttgatgataataatgtatgaaagaataattgaatattctaagatgtgttcaagtatgca 91  Q
    ||||||||||||| ||||  |||||||||||||||| |||| || ||||||||| ||||    
T  12398199 ttgatgataataaagtattgaagaataattgaatatgctaatatatgttcaagtgtgca 12398141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 57; Significance: 8e-24; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 52 - 223
Target Start/End: Original strand, 4698638 - 4698807
Alignment:
Q  52 aaagaataattgaatattctaagatgtgttcaagtatgcaagatcatagaattaaattcagtcttcaaagttaagttttggttctgatacatcatgctct 151  Q
    |||||| ||||||||| |||||  | ||||||||| ||||| | |||| |||||||||  |  || || |   ||||||||||  |||||||||||||||    
T  4698638 aaagaacaattgaatactctaatgtatgttcaagtgtgcaaaaccataaaattaaattatgatttaaatgcccagttttggtt--gatacatcatgctct 4698735  T
Q  152 aaatataaaggaaatcattttggtactcaagagaagcattgaaaacttctgaagacttagcagatgatctga 223  Q
    ||| ||||||||||||||||||||||| |||| |  ||||| ||||||||||||| |||| |||||||||||    
T  4698736 aaacataaaggaaatcattttggtactaaagaaacacattggaaacttctgaagatttagaagatgatctga 4698807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 36 - 286
Target Start/End: Original strand, 4596875 - 4597125
Alignment:
Q  36 atgataataatgtatgaaagaataattgaatattctaagatgtgttcaagtatgcaagatcatagaattaaattcagtcttcaaagttaagttttggttc 135  Q
    ||||| ||||| ||| |||||||| ||| ||| |||||  |||||||| || ||||| | |||| |||||||||     || || ||||||||| ||| |    
T  4596875 atgatgataatatataaaagaatatttggatactctaatgtgtgttcaggtgtgcaaaaccataaaattaaattttcaattaaaggttaagtttaggtcc 4596974  T
Q  136 tgatacatcatgctctaaatataaaggaaatcattttggtactcaagagaagcattgaaaacttctgaagacttagcagatgatctgaaaaaaggtcaac 235  Q
    ||||| |||| ||||| || |||||||||||||||||||||   |||| |||||||| |||||||| || | |||  ||||||| |||| |||||| |||    
T  4596975 tgatatatcaggctctgaacataaaggaaatcattttggtaacaaagaaaagcattggaaacttcttaaaaattaaaagatgatatgaagaaaggttaac 4597074  T
Q  236 aaaaagtcaaagctctgatcagaaaatgtatcaatccttgaagactaatga 286  Q
    ||||| ||| || | |||||| || ||| |||||  |||||||||| ||||    
T  4597075 aaaaattcacaggtgtgatcaaaagatgcatcaagtcttgaagactgatga 4597125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 33 - 111
Target Start/End: Original strand, 8108803 - 8108881
Alignment:
Q  33 ttgatgataataatgtatgaaagaataattgaatattctaagatgtgttcaagtatgcaagatcatagaattaaattca 111  Q
    |||||||||| || |||| |||||| ||| |||||| ||||  |||||||||||||| | ||||||||||||| |||||    
T  8108803 ttgatgataacaaagtataaaagaacaatggaatatgctaatgtgtgttcaagtatgtaggatcatagaattacattca 8108881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 54 - 108
Target Start/End: Complemental strand, 20649090 - 20649036
Alignment:
Q  54 agaataattgaatattctaagatgtgttcaagtatgcaagatcatagaattaaat 108  Q
    |||| |||||||||| |||| ||||||| ||||||||| ||||||||||||||||    
T  20649090 agaacaattgaatatgctaatatgtgtttaagtatgcaggatcatagaattaaat 20649036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 186
Target Start/End: Original strand, 4668242 - 4668303
Alignment:
Q  125 agttttggttctgatacatcatgctctaaatataaaggaaatcattttggtactcaagagaa 186  Q
    |||||||| |||||||||||||||||| |  ||||| |||||||||||| | || |||||||    
T  4668242 agttttggctctgatacatcatgctctgaccataaaagaaatcattttgatgctaaagagaa 4668303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 33 - 101
Target Start/End: Complemental strand, 9796606 - 9796538
Alignment:
Q  33 ttgatgataataatgtatgaaagaataattgaatattctaagatgtgttcaagtatgcaagatcataga 101  Q
    ||||||||||||| |||| |||||| ||||| ||||  ||| || ||||||||| |||| |||||||||    
T  9796606 ttgatgataataaagtattaaagaacaattggatatgttaatatatgttcaagtgtgcaggatcataga 9796538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 162 - 256
Target Start/End: Complemental strand, 9188146 - 9188052
Alignment:
Q  162 gaaatcattttggtactcaagagaagcattgaaaacttctgaagacttagcagatgatctgaaaaaaggtcaacaaaaagtcaaagctctgatca 256  Q
    |||| |||| ||||| ||||||||||||||| ||||||||||| ||||||   ||||| | || ||||||||||| ||| |||||||||||||||    
T  9188146 gaaaacattatggtattcaagagaagcattggaaacttctgaaaacttagagaatgatataaagaaaggtcaacagaaaatcaaagctctgatca 9188052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 36 - 110
Target Start/End: Complemental strand, 24386412 - 24386338
Alignment:
Q  36 atgataataatgtatgaaagaataattgaatattctaagatgtgttcaagtatgcaagatcatagaattaaattc 110  Q
    |||||||||||||||||||||| |||| | || | |||  ||||||||||| |||| || |||||||||||||||    
T  24386412 atgataataatgtatgaaagaacaatttagtaatttaatgtgtgttcaagtgtgcatgaccatagaattaaattc 24386338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 33 - 110
Target Start/End: Complemental strand, 26712983 - 26712906
Alignment:
Q  33 ttgatgataataatgtatgaaagaataattgaatattctaagatgtgttcaagtatgcaagatcatagaattaaattc 110  Q
    ||||| ||||||| |||| |||||| |||||||||| |||| |||||||||||| || | || |||| ||||||||||    
T  26712983 ttgatcataataaagtataaaagaacaattgaatatgctaatatgtgttcaagtgtgtatgaccatataattaaattc 26712906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 33 - 145
Target Start/End: Original strand, 35511861 - 35511974
Alignment:
Q  33 ttgatgataataatgtatgaaagaataattgaatattctaagatgtgttcaagtatgcaagatcatagaattaaattcagtcttcaaagttaag-ttttg 131  Q
    ||||||||||  |||||| |||||||||||  ||| |||||  | ||||||||||| ||||| ||||  ||||||||  |  |||||||||||| |||||    
T  35511861 ttgatgataacgatgtataaaagaataatttgatactctaatgtatgttcaagtatacaagaccatatgattaaattatgatttcaaagttaagtttttg 35511960  T
Q  132 gttctgatacatca 145  Q
    ||||| ||||||||    
T  35511961 gttcttatacatca 35511974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 33 - 84
Target Start/End: Original strand, 16748091 - 16748142
Alignment:
Q  33 ttgatgataataatgtatgaaagaataattgaatattctaagatgtgttcaa 84  Q
    ||||||||||||||||||||||||| | ||||||| |||||  |||||||||    
T  16748091 ttgatgataataatgtatgaaagaacagttgaatactctaatgtgtgttcaa 16748142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 110
Target Start/End: Original strand, 25905624 - 25905701
Alignment:
Q  33 ttgatgataataatgtatgaaagaataattgaatattctaagatgtgttcaagtatgcaagatcatagaattaaattc 110  Q
    ||||||||||||| ||| ||||||| ||||||| ||  |||  ||||||||  ||||||||| |||| ||||||||||    
T  25905624 ttgatgataataacgtaagaaagaacaattgaaaatgttaatgtgtgttcagatatgcaagaccatataattaaattc 25905701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 264
Target Start/End: Original strand, 21538630 - 21538701
Alignment:
Q  195 aacttctgaagacttagcagatgatctgaaaaaaggtcaacaaaaa--gtcaaagctctgatcagaaaatgt 264  Q
    ||||| ||||||||||  ||||||||  ||||||||||||||||||   ||||||||||||| |||| ||||    
T  21538630 aacttttgaagacttaaaagatgatccaaaaaaaggtcaacaaaaaacatcaaagctctgattagaagatgt 21538701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University