View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6921_high_7 (Length: 300)
Name: NF6921_high_7
Description: NF6921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6921_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 130; Significance: 2e-67; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 165 - 294
Target Start/End: Complemental strand, 37000658 - 37000529
Alignment:
| Q |
165 |
ggtcatgatttttgttgccattgttggtgctagacaacctatgctgatattgtggcaagtcaaaaatcatcatcatccatagaagaaacaaaaggaacag |
264 |
Q |
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| T |
37000658 |
ggtcatgatttttgttgccattgttggtgctagacaacctatgctgatattgtggcaagtcaaaaatcatcatcatccatagaagaaacaaaaggaacag |
37000559 |
T |
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| Q |
265 |
cggagagtgacactgctagtggggagctac |
294 |
Q |
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| T |
37000558 |
cggagagtgacactgctagtggggagctac |
37000529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 37000760 - 37000653
Alignment:
| Q |
1 |
aaaatagattttcccccaaccaagcaagtaaggattcattcatattcactgcaaatagaattctcccaaggacaaatattttagacttgagcaatgctaa |
100 |
Q |
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| T |
37000760 |
aaaatagattttcccccaaccaagcaagtaaggattcattcatattcactgcaaatagaattctcccaaggacaaatattttagacttgagcaatgctaa |
37000661 |
T |
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| Q |
101 |
gaggtcat |
108 |
Q |
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| T |
37000660 |
gaggtcat |
37000653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 161 - 286
Target Start/End: Complemental strand, 36995957 - 36995829
Alignment:
| Q |
161 |
atgtggtcatgatttttgttgccattgttg---gtgctagacaacctatgctgatattgtggcaagtcaaaaatcatcatcatccatagaagaaacaaaa |
257 |
Q |
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| T |
36995957 |
atgtggtcatgatttttgttgtcattgttgttggtgctagagaacctatgctaatattgtggcaagtcaaacggcatcatcagccataatagaaaccaaa |
36995858 |
T |
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| Q |
258 |
ggaacagcggagagtgacactgctagtgg |
286 |
Q |
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| T |
36995857 |
ggaacagcagagagtgtcacagcttgtgg |
36995829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 21 - 136
Target Start/End: Complemental strand, 36987202 - 36987085
Alignment:
| Q |
21 |
caagcaagtaaggattcattcatattcactgcaaatagaattctcccaaggacaaata--ttttagacttgagcaatgctaagaggtcatttgtgaaagg |
118 |
Q |
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| T |
36987202 |
caagcaagtaagacttcattcatattcgctccaaatagaaatctcccagagacaaataaattttagacttgaggcattctaagaggtcatttgtgaaaga |
36987103 |
T |
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| Q |
119 |
tttgggtttacaattaca |
136 |
Q |
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||| || |||||| |||| |
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| T |
36987102 |
tttaggcttacaagtaca |
36987085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 158 - 261
Target Start/End: Complemental strand, 36980060 - 36979955
Alignment:
| Q |
158 |
tggatgtggtcatgatttttgttgccat--tgttggtgctagacaacctatgctgatattgtggcaagtcaaaaatcatcatcatccatagaagaaacaa |
255 |
Q |
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||||||||||||||| ||||||||| | ||||||||||| | || |||||| ||||| | | ||||||||| |||||||| |||||| |||||| | |
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| T |
36980060 |
tggatgtggtcatgaattttgttgcattgttgttggtgctatagaatgtatgctaatatttttgtaagtcaaaaggcatcatcaaccatagtagaaacca |
36979961 |
T |
|
| Q |
256 |
aaggaa |
261 |
Q |
| |
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|||||| |
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| T |
36979960 |
aaggaa |
36979955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 121
Target Start/End: Complemental strand, 36981066 - 36980956
Alignment:
| Q |
17 |
caaccaagcaagtaaggattcattcatat--tcactgcaaatagaattctcccaaggacaaat----attttagacttgagcaatgctaagaggtcattt |
110 |
Q |
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||||||||||||||||| |||||||||| ||||| |||||||| || ||| ||||| ||| |||||||||||| | ||||||||| ||||||| |
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| T |
36981066 |
caaccaagcaagtaaggcctcattcatatattcactcaaaatagaaatccccccaggaccaattaaaattttagacttgtgacatgctaagacgtcattt |
36980967 |
T |
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| Q |
111 |
gtgaaaggttt |
121 |
Q |
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| T |
36980966 |
gtgaaatgttt |
36980956 |
T |
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