View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6921_high_8 (Length: 288)
Name: NF6921_high_8
Description: NF6921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6921_high_8 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 36 - 268
Target Start/End: Complemental strand, 34047985 - 34047748
Alignment:
| Q |
36 |
taaatgttcctatgtggatgtacaaaatcaaacaataatcttggatttgattcattactagtgaagaaatgagaccttagtctaagaaaatttgtggaat |
135 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34047985 |
taaatgttcctatgtggatggacaaaatcaaacaataatcttggatttgattcattactagtgaagaaatgagaccttagtctaagaaaatttgtggaat |
34047886 |
T |
|
| Q |
136 |
tatctcacttcttgcgtgag-nnnnnnnnnagaggaaagttatatgagtttgttga----gtatagctctccatctacaaattggttagttaaattaaat |
230 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34047885 |
tatctcacttcttgcgtgagttttttttttagaggaaagttatatgagtttgttgactatatatagctctccatctacaaattggttagttaaattaaat |
34047786 |
T |
|
| Q |
231 |
caggataattctttaaaattaatatacataatagtaat |
268 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
34047785 |
caggataattctttaaaattaatatacataataataat |
34047748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University