View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6921_low_13 (Length: 256)

Name: NF6921_low_13
Description: NF6921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6921_low_13
NF6921_low_13
[»] chr2 (20 HSPs)
chr2 (17-248)||(44956851-44957082)
chr2 (151-248)||(14105144-14105241)
chr2 (165-248)||(5870604-5870687)
chr2 (165-248)||(5873746-5873829)
chr2 (161-248)||(15952556-15952643)
chr2 (161-248)||(35139088-35139175)
chr2 (161-248)||(35147424-35147511)
chr2 (161-248)||(42565432-42565519)
chr2 (161-248)||(42574056-42574143)
chr2 (161-248)||(18972596-18972681)
chr2 (160-248)||(38084017-38084105)
chr2 (161-248)||(17781-17868)
chr2 (161-248)||(15944041-15944128)
chr2 (161-248)||(24690575-24690662)
chr2 (206-248)||(18500752-18500794)
chr2 (167-248)||(45031716-45031796)
chr2 (208-248)||(11874224-11874264)
chr2 (206-238)||(36735850-36735882)
chr2 (161-248)||(41233326-41233414)
chr2 (153-248)||(13059922-13060016)
[»] chr1 (24 HSPs)
chr1 (56-248)||(28857403-28857595)
chr1 (56-248)||(31064516-31064708)
chr1 (60-248)||(8770165-8770358)
chr1 (153-248)||(23191461-23191556)
chr1 (74-248)||(27761205-27761375)
chr1 (59-248)||(36725268-36725457)
chr1 (153-248)||(2493261-2493356)
chr1 (56-238)||(33380271-33380453)
chr1 (56-248)||(12906702-12906894)
chr1 (160-248)||(47108854-47108942)
chr1 (161-248)||(2416199-2416286)
chr1 (151-230)||(24159252-24159331)
chr1 (189-238)||(19309085-19309134)
chr1 (165-238)||(25661307-25661380)
chr1 (161-248)||(20429839-20429927)
chr1 (161-248)||(19367945-19368032)
chr1 (161-248)||(44832048-44832135)
chr1 (206-248)||(15473362-15473404)
chr1 (56-138)||(19308914-19308996)
chr1 (160-248)||(9352757-9352845)
chr1 (208-248)||(31540497-31540537)
chr1 (208-248)||(31549066-31549106)
chr1 (161-248)||(51968410-51968498)
chr1 (208-248)||(3432396-3432436)
[»] chr7 (17 HSPs)
chr7 (55-248)||(25831694-25831887)
chr7 (189-248)||(6897877-6897936)
chr7 (189-248)||(29477733-29477792)
chr7 (161-238)||(46299429-46299506)
chr7 (164-248)||(1858067-1858151)
chr7 (56-132)||(23615690-23615766)
chr7 (161-248)||(6851508-6851595)
chr7 (206-248)||(4831842-4831884)
chr7 (161-248)||(44412809-44412898)
chr7 (207-248)||(28415658-28415699)
chr7 (208-248)||(12978998-12979038)
chr7 (208-248)||(13832021-13832061)
chr7 (208-248)||(13840051-13840091)
chr7 (208-248)||(18303885-18303925)
chr7 (206-238)||(43005173-43005205)
chr7 (206-248)||(34132328-34132370)
chr7 (206-248)||(34138640-34138682)
[»] chr8 (17 HSPs)
chr8 (74-248)||(21640523-21640695)
chr8 (57-248)||(4543641-4543829)
chr8 (153-238)||(7146386-7146471)
chr8 (151-248)||(19950379-19950476)
chr8 (161-248)||(32007216-32007303)
chr8 (151-248)||(2470537-2470634)
chr8 (192-248)||(19954833-19954889)
chr8 (161-248)||(39845108-39845195)
chr8 (140-230)||(34517777-34517867)
chr8 (162-230)||(13386108-13386176)
chr8 (160-248)||(32025147-32025235)
chr8 (161-248)||(39837066-39837153)
chr8 (206-248)||(22156482-22156524)
chr8 (206-248)||(32000292-32000334)
chr8 (206-238)||(22162495-22162527)
chr8 (208-248)||(30938825-30938865)
chr8 (161-248)||(25858764-25858851)
[»] chr6 (24 HSPs)
chr6 (57-228)||(28969389-28969558)
chr6 (151-230)||(35130204-35130283)
chr6 (160-248)||(19714166-19714254)
chr6 (160-248)||(19899434-19899522)
chr6 (160-248)||(28702384-28702472)
chr6 (161-248)||(25506026-25506113)
chr6 (162-248)||(20452145-20452231)
chr6 (198-248)||(32814555-32814605)
chr6 (160-248)||(20458962-20459050)
chr6 (189-248)||(14042204-14042263)
chr6 (161-248)||(22764368-22764455)
chr6 (161-248)||(22778617-22778704)
chr6 (206-248)||(3917088-3917130)
chr6 (206-248)||(22232105-22232147)
chr6 (153-230)||(14776121-14776198)
chr6 (160-248)||(10984571-10984659)
chr6 (160-248)||(19720322-19720410)
chr6 (56-92)||(29610129-29610165)
chr6 (208-248)||(30824022-30824062)
chr6 (161-248)||(35091162-35091250)
chr6 (206-248)||(26896975-26897017)
chr6 (193-247)||(29610458-29610514)
chr6 (208-248)||(18909612-18909652)
chr6 (208-248)||(29600929-29600969)
[»] scaffold0586 (1 HSPs)
scaffold0586 (55-248)||(5229-5422)
[»] scaffold0045 (1 HSPs)
scaffold0045 (57-171)||(44453-44567)
[»] chr5 (28 HSPs)
chr5 (57-238)||(18264851-18265029)
chr5 (56-248)||(1285599-1285791)
chr5 (151-230)||(16747666-16747746)
chr5 (153-248)||(15591153-15591248)
chr5 (161-248)||(15956491-15956578)
chr5 (161-248)||(25041762-25041849)
chr5 (164-248)||(37048846-37048930)
chr5 (161-248)||(20639358-20639445)
chr5 (161-248)||(24956333-24956420)
chr5 (161-248)||(24964793-24964880)
chr5 (161-248)||(25526666-25526753)
chr5 (161-248)||(25533348-25533435)
chr5 (161-248)||(26186143-26186230)
chr5 (161-248)||(28844415-28844502)
chr5 (161-248)||(28853025-28853112)
chr5 (161-248)||(36448730-36448817)
chr5 (161-248)||(36455114-36455201)
chr5 (161-248)||(30249800-30249887)
chr5 (168-248)||(38227438-38227516)
chr5 (208-248)||(1727660-1727700)
chr5 (161-248)||(43597547-43597635)
chr5 (161-248)||(43630341-43630429)
chr5 (161-248)||(20092265-20092352)
chr5 (161-248)||(20099142-20099229)
chr5 (161-248)||(23377794-23377881)
chr5 (161-248)||(40015377-40015464)
chr5 (208-248)||(10058307-10058347)
chr5 (161-248)||(23349575-23349663)
[»] chr4 (21 HSPs)
chr4 (59-132)||(15017386-15017459)
chr4 (56-232)||(55081044-55081220)
chr4 (163-248)||(40684312-40684397)
chr4 (191-248)||(2574815-2574872)
chr4 (160-248)||(3381937-3382025)
chr4 (161-248)||(19737506-19737593)
chr4 (161-248)||(20548857-20548944)
chr4 (161-248)||(50188271-50188358)
chr4 (167-248)||(12613711-12613792)
chr4 (160-248)||(3388683-3388771)
chr4 (156-248)||(8817010-8817102)
chr4 (192-248)||(16595447-16595503)
chr4 (160-248)||(38853839-38853927)
chr4 (164-248)||(39744923-39745007)
chr4 (161-248)||(8657976-8658063)
chr4 (189-248)||(20513667-20513726)
chr4 (193-248)||(39991410-39991465)
chr4 (188-238)||(15017489-15017539)
chr4 (208-248)||(8093776-8093816)
chr4 (208-248)||(8102581-8102621)
chr4 (189-248)||(33722383-33722443)
[»] chr3 (32 HSPs)
chr3 (161-238)||(4662735-4662812)
chr3 (160-248)||(14887527-14887615)
chr3 (160-248)||(21638057-21638145)
chr3 (151-248)||(48431740-48431837)
chr3 (160-248)||(68631-68719)
chr3 (160-248)||(74724-74812)
chr3 (161-248)||(8606639-8606726)
chr3 (161-248)||(8613100-8613187)
chr3 (161-248)||(13105138-13105225)
chr3 (161-248)||(13111295-13111382)
chr3 (161-248)||(14880810-14880897)
chr3 (161-248)||(14892625-14892712)
chr3 (161-248)||(23287626-23287713)
chr3 (163-248)||(261838-261923)
chr3 (161-248)||(9524914-9525001)
chr3 (161-248)||(17934551-17934638)
chr3 (161-248)||(26386206-26386293)
chr3 (56-163)||(41565890-41565997)
chr3 (206-248)||(12558374-12558416)
chr3 (206-248)||(16815350-16815392)
chr3 (202-248)||(41007095-41007141)
chr3 (206-248)||(48060228-48060270)
chr3 (161-238)||(9554600-9554677)
chr3 (115-176)||(12156152-12156213)
chr3 (191-248)||(48435364-48435421)
chr3 (208-248)||(8154140-8154180)
chr3 (161-248)||(11181248-11181333)
chr3 (148-248)||(16983522-16983622)
chr3 (208-248)||(41015880-41015920)
chr3 (161-248)||(4313090-4313177)
chr3 (161-248)||(37468505-37468592)
chr3 (206-248)||(16030814-16030856)
[»] scaffold0119 (1 HSPs)
scaffold0119 (161-248)||(39711-39798)
[»] scaffold0046 (1 HSPs)
scaffold0046 (161-237)||(86201-86277)
[»] scaffold0039 (1 HSPs)
scaffold0039 (161-248)||(89366-89453)
[»] scaffold0031 (1 HSPs)
scaffold0031 (161-248)||(33219-33306)
[»] scaffold0027 (1 HSPs)
scaffold0027 (161-248)||(24069-24156)
[»] scaffold0009 (1 HSPs)
scaffold0009 (169-248)||(163843-163922)
[»] scaffold0226 (1 HSPs)
scaffold0226 (167-248)||(5716-5797)
[»] scaffold0096 (1 HSPs)
scaffold0096 (161-238)||(889-966)
[»] scaffold0018 (1 HSPs)
scaffold0018 (191-248)||(171192-171249)
[»] scaffold1699 (1 HSPs)
scaffold1699 (208-248)||(887-927)
[»] scaffold0085 (1 HSPs)
scaffold0085 (206-248)||(18243-18285)
[»] scaffold0306 (1 HSPs)
scaffold0306 (208-248)||(16178-16218)
[»] scaffold0301 (1 HSPs)
scaffold0301 (208-248)||(9433-9473)
[»] scaffold0065 (1 HSPs)
scaffold0065 (208-248)||(43737-43777)
[»] scaffold0028 (1 HSPs)
scaffold0028 (206-237)||(66336-66367)
[»] scaffold0016 (1 HSPs)
scaffold0016 (161-248)||(14584-14671)
[»] scaffold0043 (1 HSPs)
scaffold0043 (162-248)||(32723-32809)
[»] scaffold0351 (1 HSPs)
scaffold0351 (208-248)||(7108-7148)


Alignment Details
Target: chr2 (Bit Score: 165; Significance: 2e-88; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 17 - 248
Target Start/End: Original strand, 44956851 - 44957082
Alignment:
Q  17 ttagaacacatgaagtgttagtgtgaattnnnnnnnnnttcatgtcaactttctcaattattgctcatttatgaggtgatgtcaaacaattaattttcta 116  Q
    |||||||||||||||||||||||||||||          ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44956851 ttagaacacatgaagtgttagtgtgaattaaaaaaattctcacgtcaactttctcaattattgctcatttatgaggtgatgtcaaacaattaattttcta 44956950  T
Q  117 acagtcaaatgatcttagctgtcggatctaaaattcatctttgactcctcacctataaatagaactttcattcctcacttgtactcaccccaaaagttct 216  Q
    || ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  44956951 acggtcaaatgatcttagctgtcggatctaaaattcatctttgattcatcacctataaatagaactctcattcctcacttgtactcaccccaaaagttct 44957050  T
Q  217 cttgagttgtcaaagaacttttatttcttctc 248  Q
    |||||||||| |||||| |||| | |||||||    
T  44957051 cttgagttgttaaagaaattttctctcttctc 44957082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 151 - 248
Target Start/End: Complemental strand, 14105241 - 14105144
Alignment:
Q  151 tcatctttgactcctcacctataaatagaactttcattcctcacttgtactcaccccaaaagttctcttgagttgtcaaagaacttttatttcttctc 248  Q
    ||||||||| ||||||||||||||||||| ||    | |||||||| ||||||||||||||||||||||||||||||||| ||||||| | |||||||    
T  14105241 tcatctttggctcctcacctataaatagagctcctctccctcacttttactcaccccaaaagttctcttgagttgtcaaataacttttctctcttctc 14105144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 165 - 248
Target Start/End: Complemental strand, 5870687 - 5870604
Alignment:
Q  165 tcacctataaatagaactttcattcctcacttgtactcaccccaaaagttctcttgagttgtcaaagaacttttatttcttctc 248  Q
    ||||||||||||||| || ||||||| |||   | | ||| ||||||||||||||||||||||||||||||||| | |||||||    
T  5870687 tcacctataaatagagctctcattccacacaatttcacacaccaaaagttctcttgagttgtcaaagaacttttctctcttctc 5870604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 165 - 248
Target Start/End: Complemental strand, 5873829 - 5873746
Alignment:
Q  165 tcacctataaatagaactttcattcctcacttgtactcaccccaaaagttctcttgagttgtcaaagaacttttatttcttctc 248  Q
    ||||||||||||||| || ||||||| |||   | | ||| ||||||||||||||||||||||||||||||||| | |||||||    
T  5873829 tcacctataaatagagctctcattccacacaatttcacacaccaaaagttctcttgagttgtcaaagaacttttctctcttctc 5873746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 161 - 248
Target Start/End: Complemental strand, 15952643 - 15952556
Alignment:
Q  161 ctcctcacctataaatagaactttcattcctcacttgtactcaccccaaaagttctcttgagttgtcaaagaacttttatttcttctc 248  Q
    ||||||||||||||||||| |  |||| || |||   ||| ||| ||||||||||||||||||||||||||||||||| | |||||||    
T  15952643 ctcctcacctataaatagagccctcataccacacaattacacacaccaaaagttctcttgagttgtcaaagaacttttctctcttctc 15952556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 161 - 248
Target Start/End: Original strand, 35139088 - 35139175
Alignment:
Q  161 ctcctcacctataaatagaactttcattcctcacttgtactcaccccaaaagttctcttgagttgtcaaagaacttttatttcttctc 248  Q
    ||||||||||||||||||| |  |||| || |||   ||| ||| ||||||||||||||||||||||||||||||||| | |||||||    
T  35139088 ctcctcacctataaatagagccctcataccacacaattacacacaccaaaagttctcttgagttgtcaaagaacttttctctcttctc 35139175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 161 - 248
Target Start/End: Original strand, 35147424 - 35147511
Alignment:
Q  161 ctcctcacctataaatagaactttcattcctcacttgtactcaccccaaaagttctcttgagttgtcaaagaacttttatttcttctc 248  Q
    ||||||||||||||||||| |  |||| || |||   ||| ||| ||||||||||||||||||||||||||||||||| | |||||||    
T  35147424 ctcctcacctataaatagagccctcataccacacaattacacacaccaaaagttctcttgagttgtcaaagaacttttctctcttctc 35147511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 161 - 248
Target Start/End: Complemental strand, 42565519 - 42565432
Alignment:
Q  161 ctcctcacctataaatagaactttcattcctcacttgtactcaccccaaaagttctcttgagttgtcaaagaacttttatttcttctc 248  Q
    ||||||||||||||||||| |  ||||||| |||   | | ||| ||||||||||||||||||||||||||||||||| | |||||||    
T  42565519 ctcctcacctataaatagagccctcattccacacaatttcacacaccaaaagttctcttgagttgtcaaagaacttttctctcttctc 42565432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 161 - 248
Target Start/End: Complemental strand, 42574143 - 42574056
Alignment:
Q  161 ctcctcacctataaatagaactttcattcctcacttgtactcaccccaaaagttctcttgagttgtcaaagaacttttatttcttctc 248  Q
    ||||||||||||||||||| |  ||||||| |||   | | ||| ||||||||||||||||||||||||||||||||| | |||||||    
T  42574143 ctcctcacctataaatagagccctcattccacacaatttcacacaccaaaagttctcttgagttgtcaaagaacttttctctcttctc 42574056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 161 - 248
Target Start/End: Complemental strand, 18972681 - 18972596
Alignment:
Q  161 ctcctcacctataaatagaactttcattcctcacttgtactcaccccaaaagttctcttgagttgtcaaagaacttttatttcttctc 248  Q
    ||||||||||||||||||| | |||||||| |||   |  | || ||||||||||||||||||||||||||||||||| | |||||||    
T  18972681 ctcctcacctataaatagagccttcattccacacaatt--tgacaccaaaagttctcttgagttgtcaaagaacttttctctcttctc 18972596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 160 - 248
Target Start/End: Complemental strand, 38084105 - 38084017
Alignment:
Q  160 actcctcacctataaatagaactttcattcctcacttgtactcaccccaaaagttctcttgagttgtcaaagaacttttatttcttctc 248  Q
    |||||||||||||||||||| |  ||||||| |||   | | ||| ||||||||||||||||||||| ||||||||||| | |||||||    
T  38084105 actcctcacctataaatagagccctcattccacacaatttcacacaccaaaagttctcttgagttgtaaaagaacttttctctcttctc 38084017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 161 - 248
Target Start/End: Complemental strand, 17868 - 17781
Alignment:
Q  161 ctcctcacctataaatagaactttcattcctcacttgtactcaccccaaaagttctcttgagttgtcaaagaacttttatttcttctc 248  Q
    ||||||||||||||||||| |  ||||||| |||   | | ||| ||||||||||| ||||||||||||||||||||| | |||||||    
T  17868 ctcctcacctataaatagagccctcattccacacaatttcacacaccaaaagttctattgagttgtcaaagaacttttctctcttctc 17781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 161 - 248
Target Start/End: Complemental strand, 15944128 - 15944041
Alignment:
Q  161 ctcctcacctataaatagaactttcattcctcacttgtactcaccccaaaagttctcttgagttgtcaaagaacttttatttcttctc 248  Q
    ||||||||||||||||||| |  |||| || |||   | | ||| ||||||||||||||||||||||||||||||||| | |||||||    
T  15944128 ctcctcacctataaatagagccctcataccacacaattgcacacaccaaaagttctcttgagttgtcaaagaacttttctctcttctc 15944041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 161 - 248
Target Start/End: Original strand, 24690575 - 24690662
Alignment:
Q  161 ctcctcacctataaatagaactttcattcctcacttgtactcaccccaaaagttctcttgagttgtcaaagaacttttatttcttctc 248  Q
    ||||||||||||||||||| |  ||||||| |||   | | ||| | ||||||||||||||||||||||||||||||| | |||||||    
T  24690575 ctcctcacctataaatagagccctcattccacacaatttcacacacaaaaagttctcttgagttgtcaaagaacttttctctcttctc 24690662  T

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Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 206 - 248
Target Start/End: Original strand, 18500752 - 18500794
Alignment:
Q  206 ccaaaagttctcttgagttgtcaaagaacttttatttcttctc 248  Q
    ||||||||||||||||||||||||||||||||| | |||||||    
T  18500752 ccaaaagttctcttgagttgtcaaagaacttttctctcttctc 18500794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 167 - 248
Target Start/End: Complemental strand, 45031796 - 45031716
Alignment:
Q  167 acctataaatagaactttcattcctcacttgtactcaccccaaaagttctcttgagttgtcaaagaacttttatttcttctc 248  Q
    ||||||||||||| || |||||||||| || ||  ||  | ||||||||||||||||||||||||||| ||||| |||||||    
T  45031796 acctataaatagagctatcattcctcatttataa-cagacaaaaagttctcttgagttgtcaaagaacctttatctcttctc 45031716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 208 - 248
Target Start/End: Original strand, 11874224 - 11874264
Alignment:
Q  208 aaaagttctcttgagttgtcaaagaacttttatttcttctc 248  Q
    ||||||||||||||||||||||||||||||| | |||||||    
T  11874224 aaaagttctcttgagttgtcaaagaacttttctctcttctc 11874264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 206 - 238
Target Start/End: Original strand, 36735850 - 36735882
Alignment:
Q  206 ccaaaagttctcttgagttgtcaaagaactttt 238  Q
    |||||||||||||||||||||||||||||||||    
T  36735850 ccaaaagttctcttgagttgtcaaagaactttt 36735882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 248
Target Start/End: Complemental strand, 41233414 - 41233326
Alignment:
Q  161 ctcctcacctataaatagaactttcattcctcacttgtactcac-cccaaaagttctcttgagttgtcaaagaacttttatttcttctc 248  Q
    ||||||||||||||||||| |  |||| || |||   ||| ||| || ||||||||||||||||||||||||||||||| | |||||||    
T  41233414 ctcctcacctataaatagagccctcataccacacaattacacacaccaaaaagttctcttgagttgtcaaagaacttttctctcttctc 41233326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 153 - 248
Target Start/End: Original strand, 13059922 - 13060016
Alignment:
Q  153 atctttgactcctcacctataaatagaactttcattcctcacttgtactcaccccaaaagttctcttgagttgtcaaagaacttttatttcttctc 248  Q
    ||||||||||||||||||||||||||  ||   ||  ||||||| || | || | ||||||||||||||||| ||||||||||||| | |||||||    
T  13059922 atctttgactcctcacctataaatagtgctcatatctctcacttttattaacac-aaaagttctcttgagttttcaaagaacttttctctcttctc 13060016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 117; Significance: 1e-59; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 56 - 248
Target Start/End: Original strand, 28857403 - 28857595
Alignment:
Q  56 tcatgtcaactttctcaattattgctcatttatgaggtgatgtcaaacaattaattttctaacagtcaaatgatcttagctgtcggatctaaaattcatc 155  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||  ||||||||| |||| ||||||||||||||||  | |||||||||| |||||    
T  28857403 tcatgtcaactttctcaattattgctcatttatgaggtgaggtcaaatcattaattttgtaactgtcaaatgatcttagccattggatctaaaactcatc 28857502  T
Q  156 tttgactcctcacctataaatagaactttcattcctcacttgtactcaccccaaaagttctcttgagttgtcaaagaacttttatttcttctc 248  Q
    |||| ||||||||||||||||||| || |  |||||||||| ||||||| ||||||||||| ||||||||||||||||||||| | |||||||    
T  28857503 tttggctcctcacctataaatagagctcttgttcctcacttctactcactccaaaagttcttttgagttgtcaaagaacttttctgtcttctc 28857595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 56 - 248
Target Start/End: Complemental strand, 31064708 - 31064516
Alignment:
Q  56 tcatgtcaactttctcaattattgctcatttatgaggtgatgtcaaacaattaattttctaacagtcaaatgatcttagctgtcggatctaaaattcatc 155  Q
    ||||||||||||| ||||||||||||||||||| |||||| ||||||| ||| ||||| |||| ||||||||||| ||||  | |||||||||| |||||    
T  31064708 tcatgtcaactttatcaattattgctcatttattaggtgaggtcaaaccatttattttgtaacggtcaaatgatcgtagccattggatctaaaactcatc 31064609  T
Q  156 tttgactcctcacctataaatagaactttcattcctcacttgtactcaccccaaaagttctcttgagttgtcaaagaacttttatttcttctc 248  Q
    ||||  |||||||||||||||| | || |  |||||||||| | |||||| ||||||||||||||||||||||||||| |||| | |||||||    
T  31064608 tttggttcctcacctataaatatagctcttgttcctcacttcttctcaccacaaaagttctcttgagttgtcaaagaatttttctctcttctc 31064516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 60 - 248
Target Start/End: Complemental strand, 8770358 - 8770165
Alignment:
Q  60 gtcaactttctcaattattgctcatttatgaggtgatgtcaaacaattaattttctaacagtcaaatgatcttag-----------ctgtcggatctaaa 148  Q
    |||||| ||||||||||||||||||||||||||||| ||||||| ||||||||| || |||||||||||||||||            | | |||||||||    
T  8770358 gtcaacattctcaattattgctcatttatgaggtgaggtcaaactattaattttgtatcagtcaaatgatcttagtcaaactattaattttggatctaaa 8770259  T
Q  149 attcatctttgactcctcacctataaatagaactttcattcctcacttgtactcaccccaaaagttctcttgagttgtcaaagaacttttatttcttctc 248  Q
    | |||| |||||||||||||| ||||||||| || | |||| ||||||||||||      ||||||||||||||||||||||||| |||| | |||||||    
T  8770258 actcatatttgactcctcacccataaatagagctcttattcatcacttgtactc------aaagttctcttgagttgtcaaagaatttttctctcttctc 8770165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 153 - 248
Target Start/End: Original strand, 23191461 - 23191556
Alignment:
Q  153 atctttgactcctcacctataaatagaactttcattcctcacttgtactcaccccaaaagttctcttgagttgtcaaagaacttttatttcttctc 248  Q
    ||||||||||||||||||||||||||| || || |||||||||| | ||||||||||||| ||| ||||||||||||||||| ||| | |||||||    
T  23191461 atctttgactcctcacctataaatagagctctctttcctcacttcttctcaccccaaaagatcttttgagttgtcaaagaacatttctctcttctc 23191556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 74 - 248
Target Start/End: Original strand, 27761205 - 27761375
Alignment:
Q  74 ttattgctcatttatgaggtgatgtcaaacaattaattttctaacagtcaaatgatcttagctgtcggatctaaaattcatctttgactcctcacctata 173  Q
    |||||||| |||||||||| |||||||||  ||||||||| |||| ||||||||||||| || || |||| | || | ||| | || |||||||||||||    
T  27761205 ttattgcttatttatgaggagatgtcaaatcattaattttgtaacggtcaaatgatcttggccgttggatttgaact-catgtgtggctcctcacctata 27761303  T
Q  174 aatagaactttcattcctcacttgtactcaccccaaaagttctcttgagttgtcaaagaacttttatttcttctc 248  Q
    |||||| |  || |||||||||| |||||||| |||||||||||  ||||||||||| ||||||| | |||||||    
T  27761304 aatagagcactc-ttcctcacttctactcacctcaaaagttctc--gagttgtcaaataacttttctctcttctc 27761375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 59 - 248
Target Start/End: Complemental strand, 36725457 - 36725268
Alignment:
Q  59 tgtcaactttctcaattattgctcatttatgaggtgatgtcaaacaattaattttctaacagtcaaatgatcttagctgtcggatctaaaattcatcttt 158  Q
    |||||||||||||||||| ||||||||||||| | ||  |||| | ||| |||||||||| ||||| | ||| ||||  | |||| |  || | ||||||    
T  36725457 tgtcaactttctcaattagtgctcatttatgatgcgagatcaagccattgattttctaacggtcaattaatcctagccattggatttgtaacttatcttt 36725358  T
Q  159 gactcctcacctataaatagaactttcattcctcacttgtactcaccccaaaagttctcttgagttgtcaaagaacttttatttcttctc 248  Q
    | ||| |||||||||||| || ||  | | |||||||| ||||||| ||||||||||| ||||||||||||| ||||||| | |||||||    
T  36725357 ggctcttcacctataaattgagctcccctccctcacttctactcacaccaaaagttcttttgagttgtcaaataacttttctctcttctc 36725268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 153 - 248
Target Start/End: Original strand, 2493261 - 2493356
Alignment:
Q  153 atctttgactcctcacctataaatagaactttcattcctcacttgtactcaccccaaaagttctcttgagttgtcaaagaacttttatttcttctc 248  Q
    ||||||| ||||||||||||||||||| || ||||||||||||| |  |||| ||||||||||| ||||||||||||| ||||||| | |||||||    
T  2493261 atctttggctcctcacctataaatagagctctcattcctcacttctgatcacaccaaaagttcttttgagttgtcaaaaaacttttctctcttctc 2493356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 56 - 238
Target Start/End: Original strand, 33380271 - 33380453
Alignment:
Q  56 tcatgtcaactttctcaattattgctcatttatgaggtgatgtcaaacaattaattttctaacagtcaaatgatcttagctgtcggatctaaaattcatc 155  Q
    ||||||||| ||||||||||| ||||||||||||| ||||  |||| | ||| |||||||||| || || | ||| |||   | | || |  || | |||    
T  33380271 tcatgtcaattttctcaattagtgctcatttatgatgtgagatcaagccattgattttctaacggtgaactaatcctagtcattgaatttgtaacttatc 33380370  T
Q  156 tttgactcctcacctataaatagaactttcattcctcacttgtactcaccccaaaagttctcttgagttgtcaaagaactttt 238  Q
    |||| ||| |||||||||||| || || |  | || ||||| ||||||| ||||||||||| |||||||||||||||||||||    
T  33380371 tttggctcttcacctataaattgagctcttctcccccacttctactcacaccaaaagttcttttgagttgtcaaagaactttt 33380453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 56 - 248
Target Start/End: Complemental strand, 12906894 - 12906702
Alignment:
Q  56 tcatgtcaactttctcaattattgctcatttatgaggtgatgtcaaacaattaattttctaacagtcaaatgatcttagctgtcggatctaaaattcatc 155  Q
    ||||||||||||||| ||||| || |||||||||| || |  | || | ||| |||||||||| ||||| | ||| || |  | |||| |  || | |||    
T  12906894 tcatgtcaactttcttaattagtgttcatttatgatgtaagataaagccattgattttctaacggtcaactaatcctaaccattggatttgtaacttatc 12906795  T
Q  156 tttgactcctcacctataaatagaactttcattcctcacttgtactcaccccaaaagttctcttgagttgtcaaagaacttttatttcttctc 248  Q
    |||||||| |||||||||||| || ||    | |||||||| ||||||  ||||||||| ||||||||||||||||||||||| | |||||||    
T  12906794 tttgactcttcacctataaattgagctcctctccctcacttctactcaaaccaaaagttatcttgagttgtcaaagaacttttctatcttctc 12906702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 160 - 248
Target Start/End: Original strand, 47108854 - 47108942
Alignment:
Q  160 actcctcacctataaatagaactttcattcctcacttgtactcaccccaaaagttctcttgagttgtcaaagaacttttatttcttctc 248  Q
    |||||||||||||||||||| |  ||||||| |||   | | ||| ||||||||||||||||||||||||||||||||| | |||||||    
T  47108854 actcctcacctataaatagagccctcattccacacaatttcacacaccaaaagttctcttgagttgtcaaagaacttttctctcttctc 47108942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 161 - 248
Target Start/End: Complemental strand, 2416286 - 2416199
Alignment:
Q  161 ctcctcacctataaatagaactttcattcctcacttgtactcaccccaaaagttctcttgagttgtcaaagaacttttatttcttctc 248  Q
    ||||||||||||||||||| |  ||||||| |||   | | ||| ||||||||||||||||||||||||||||||||| | |||||||    
T  2416286 ctcctcacctataaatagagccctcattccacacaatttcacacaccaaaagttctcttgagttgtcaaagaacttttctctcttctc 2416199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 151 - 230
Target Start/End: Original strand, 24159252 - 24159331
Alignment:
Q  151 tcatctttgactcctcacctataaatagaactttcattcctcacttgtactcaccccaaaagttctcttgagttgtcaaa 230  Q
    ||||||||||||| ||||||||||||| | || |  | || || || |||||||||||||||||||||||||||||||||    
T  24159252 tcatctttgactcttcacctataaataaagctcttctcccacatttctactcaccccaaaagttctcttgagttgtcaaa 24159331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 189 - 238
Target Start/End: Original strand, 19309085 - 19309134
Alignment:
Q  189 cctcacttgtactcaccccaaaagttctcttgagttgtcaaagaactttt 238  Q
    |||||||| |||| |||||||||||||||||||||||| |||||||||||    
T  19309085 cctcacttctacttaccccaaaagttctcttgagttgttaaagaactttt 19309134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 165 - 238
Target Start/End: Original strand, 25661307 - 25661380
Alignment:
Q  165 tcacctataaatagaactttcattcctcacttgtactcaccccaaaagttctcttgagttgtcaaagaactttt 238  Q
    |||||||||||||||  | |||||| ||| |||||  |||  ||||||||||||||||||||||||||||||||    
T  25661307 tcacctataaatagagttctcattcttcatttgtaaacacaacaaaagttctcttgagttgtcaaagaactttt 25661380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 161 - 248
Target Start/End: Original strand, 20429839 - 20429927
Alignment:
Q  161 ctcctcacctataaatagaactttcattcctcacttgtactcac-cccaaaagttctcttgagttgtcaaagaacttttatttcttctc 248  Q
    |||||||||||||||||||||  ||||||| |||   | | ||| || ||||||||||||||||||||||||||||||| | |||||||    
T  20429839 ctcctcacctataaatagaaccctcattccacacaatttcacacaccaaaaagttctcttgagttgtcaaagaacttttctctcttctc 20429927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 161 - 248
Target Start/End: Original strand, 19367945 - 19368032
Alignment:
Q  161 ctcctcacctataaatagaactttcattcctcacttgtactcaccccaaaagttctcttgagttgtcaaagaacttttatttcttctc 248  Q
    ||||||||||||||||||| |  ||||||| |||   | | ||| |||||||||||||||||||||||||||| |||| | |||||||    
T  19367945 ctcctcacctataaatagatccctcattccacacaatttcacacaccaaaagttctcttgagttgtcaaagaatttttctctcttctc 19368032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 161 - 248
Target Start/End: Complemental strand, 44832135 - 44832048
Alignment:
Q  161 ctcctcacctataaatagaactttcattcctcacttgtactcaccccaaaagttctcttgagttgtcaaagaacttttatttcttctc 248  Q
    ||||||||||||||||||| |  ||||||| |||   | |  || ||||||||||||||||||||||||||||||||| | |||||||    
T  44832135 ctcctcacctataaatagagccctcattccacacaatttcagacaccaaaagttctcttgagttgtcaaagaacttttctctcttctc 44832048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 206 - 248
Target Start/End: Complemental strand, 15473404 - 15473362
Alignment:
Q  206 ccaaaagttctcttgagttgtcaaagaacttttatttcttctc 248  Q
    ||||||||||||||||||||||||||||||||| | |||||||    
T  15473404 ccaaaagttctcttgagttgtcaaagaacttttctctcttctc 15473362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 56 - 138
Target Start/End: Original strand, 19308914 - 19308996
Alignment:
Q  56 tcatgtcaactttctcaattattgctcatttatgaggtgatgtcaaacaattaattttctaacagtcaaatgatcttagctgt 138  Q
    ||||||||||||||||||||| | ||||||||||||| ||  | |||  ||| |||||||||||||||| | ||| |||||||    
T  19308914 tcatgtcaactttctcaattagtactcatttatgaggagagataaaatcattgattttctaacagtcaactaatcatagctgt 19308996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 160 - 248
Target Start/End: Original strand, 9352757 - 9352845
Alignment:
Q  160 actcctcacctataaatagaactttcattcctcacttgtactcaccccaaaagttctcttgagttgtcaaagaacttttatttcttctc 248  Q
    ||||||| |||||||||| |  | | || |||||||| ||||||| ||||||||||||||||||| |||||| | |||| | |||||||    
T  9352757 actcctcgcctataaatatagatcttatccctcacttatactcacaccaaaagttctcttgagttttcaaagcatttttctctcttctc 9352845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 208 - 248
Target Start/End: Original strand, 31540497 - 31540537
Alignment:
Q  208 aaaagttctcttgagttgtcaaagaacttttatttcttctc 248  Q
    ||||||||||||||||||||||||||||||| | |||||||    
T  31540497 aaaagttctcttgagttgtcaaagaacttttctctcttctc 31540537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 208 - 248
Target Start/End: Original strand, 31549066 - 31549106
Alignment:
Q  208 aaaagttctcttgagttgtcaaagaacttttatttcttctc 248  Q
    ||||||||||||||||||||||||||||||| | |||||||    
T  31549066 aaaagttctcttgagttgtcaaagaacttttctctcttctc 31549106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 248
Target Start/End: Original strand, 51968410 - 51968498
Alignment:
Q  161 ctcctcacctataaatagaactttcattcctcacttgtactcaccccaaaa-gttctcttgagttgtcaaagaacttttatttcttctc 248  Q
    ||||||||||||||||||| |  |||| ||||||   | ||||| |||||| |||||||||||||||||||||| |||| | |||||||    
T  51968410 ctcctcacctataaatagatccctcatccctcacaatttctcacaccaaaaagttctcttgagttgtcaaagaatttttctctcttctc 51968498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 208 - 248
Target Start/End: Complemental strand, 3432436 - 3432396
Alignment:
Q  208 aaaagttctcttgagttgtcaaagaacttttatttcttctc 248  Q
    |||||||||||||||||||||| |||||||| | |||||||    
T  3432436 aaaagttctcttgagttgtcaatgaacttttctctcttctc 3432396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 103; Significance: 2e-51; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 55 - 248
Target Start/End: Original strand, 25831694 - 25831887
Alignment:
Q  55 ttcatgtcaactttctcaattattgctcatttatgaggtgatgtcaaacaattaattttctaacagtcaaatgatcttagctgtcggatctaaaa-ttca 153  Q
    ||||| |||||||| | |||||||||||||||||||| ||| ||||||| ||||||||| |||| || |||| ||||||| ||| |||||||||| ||||    
T  25831694 ttcatttcaacttttt-aattattgctcatttatgagatgaggtcaaaccattaattttgtaacggttaaataatcttagttgttggatctaaaagttca 25831792  T
Q  154 tctttgactcctcacctataaatagaactttcattcctcacttgtactcaccccaaaagttctcttgagttgtcaaagaacttttatttcttctc 248  Q
    |||||| ||||||||||||||||||| |||||||| ||||||| | || || ||||||||||||||||||||||||||||||||||| |||||||    
T  25831793 tctttggctcctcacctataaatagagctttcatttctcacttcttcttacaccaaaagttctcttgagttgtcaaagaacttttatctcttctc 25831887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 189 - 248
Target Start/End: Original strand, 6897877 - 6897936
Alignment:
Q  189 cctcacttgtactcaccccaaaagttctcttgagttgtcaaagaacttttatttcttctc 248  Q
    |||||||| |||| |||||||||||||||||||||||||||||||||||| | |||||||    
T  6897877 cctcacttctactaaccccaaaagttctcttgagttgtcaaagaacttttctctcttctc 6897936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 189 - 248
Target Start/End: Original strand, 29477733 - 29477792
Alignment:
Q  189 cctcacttgtactcaccccaaaagttctcttgagttgtcaaagaacttttatttcttctc 248  Q
    |||||||| ||||||| ||||||||||||||||||||||||||||||||| | |||||||    
T  29477733 cctcacttctactcacaccaaaagttctcttgagttgtcaaagaacttttctctcttctc 29477792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 161 - 238
Target Start/End: Complemental strand, 46299506 - 46299429
Alignment:
Q  161 ctcctcacctataaatagaactttcattcctcacttgtactcaccccaaaagttctcttgagttgtcaaagaactttt 238  Q
    ||||||||||||||||||| || |||| ||||||   | | ||| ||||||||||||||| |||||||||||||||||    
T  46299506 ctcctcacctataaatagagctctcatccctcacaatttcacacaccaaaagttctcttgggttgtcaaagaactttt 46299429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 164 - 248
Target Start/End: Complemental strand, 1858151 - 1858067
Alignment:
Q  164 ctcacctataaatagaactttcattcctcacttgtactcaccccaaaagttctcttgagttgtcaaagaacttttatttcttctc 248  Q
    |||||||||||||||| || ||||||| |||   | | ||| |||| |||||||||||||||||||||||||||| | |||||||    
T  1858151 ctcacctataaatagagctctcattccacacaatttcacacaccaacagttctcttgagttgtcaaagaacttttctctcttctc 1858067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 56 - 132
Target Start/End: Original strand, 23615690 - 23615766
Alignment:
Q  56 tcatgtcaactttctcaattattgctcatttatgaggtgatgtcaaacaattaattttctaacagtcaaatgatctt 132  Q
    ||||| |||||||  |||||||||| |||||||| || || ||||||| ||||||| | ||||||||||||||||||    
T  23615690 tcatgacaacttttacaattattgcccatttatgtggggaggtcaaaccattaattatgtaacagtcaaatgatctt 23615766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 161 - 248
Target Start/End: Complemental strand, 6851595 - 6851508
Alignment:
Q  161 ctcctcacctataaatagaactttcattcctcacttgtactcaccccaaaagttctcttgagttgtcaaagaacttttatttcttctc 248  Q
    ||||||||||||||||||| |  ||||||| |||   | | |||  |||||||||||||||||||||||||||||||| | |||||||    
T  6851595 ctcctcacctataaatagagccctcattccacacaatttcacacatcaaaagttctcttgagttgtcaaagaacttttctctcttctc 6851508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 206 - 248
Target Start/End: Complemental strand, 4831884 - 4831842
Alignment:
Q  206 ccaaaagttctcttgagttgtcaaagaacttttatttcttctc 248  Q
    ||||||||||||||||||||||||||||||||| | |||||||    
T  4831884 ccaaaagttctcttgagttgtcaaagaacttttctctcttctc 4831842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 161 - 248
Target Start/End: Complemental strand, 44412898 - 44412809
Alignment:
Q  161 ctcctcacctataaatagaactttcattcctcac--ttgtactcaccccaaaagttctcttgagttgtcaaagaacttttatttcttctc 248  Q
    |||||| |||||||||||| |  ||||||| |||  || ||| ||| |||||||||||||||||||||||||||| |||| | |||||||    
T  44412898 ctcctcgcctataaatagagccctcattccacacaattttacacacaccaaaagttctcttgagttgtcaaagaatttttctctcttctc 44412809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 207 - 248
Target Start/End: Original strand, 28415658 - 28415699
Alignment:
Q  207 caaaagttctcttgagttgtcaaagaacttttatttcttctc 248  Q
    |||||||||||||||||||||||||||||||| | |||||||    
T  28415658 caaaagttctcttgagttgtcaaagaacttttctctcttctc 28415699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 208 - 248
Target Start/End: Original strand, 12978998 - 12979038
Alignment:
Q  208 aaaagttctcttgagttgtcaaagaacttttatttcttctc 248  Q
    ||||||||||||||||||||||||||||||| | |||||||    
T  12978998 aaaagttctcttgagttgtcaaagaacttttctctcttctc 12979038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 208 - 248
Target Start/End: Original strand, 13832021 - 13832061
Alignment:
Q  208 aaaagttctcttgagttgtcaaagaacttttatttcttctc 248  Q
    ||||||||||||||||||||||||||||||| | |||||||    
T  13832021 aaaagttctcttgagttgtcaaagaacttttctctcttctc 13832061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 208 - 248
Target Start/End: Original strand, 13840051 - 13840091
Alignment:
Q  208 aaaagttctcttgagttgtcaaagaacttttatttcttctc 248  Q
    ||||||||||||||||||||||||||||||| | |||||||    
T  13840051 aaaagttctcttgagttgtcaaagaacttttctctcttctc 13840091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 208 - 248
Target Start/End: Complemental strand, 18303925 - 18303885
Alignment:
Q  208 aaaagttctcttgagttgtcaaagaacttttatttcttctc 248  Q
    ||||||||||||||||||||||||||||||| | |||||||    
T  18303925 aaaagttctcttgagttgtcaaagaacttttctctcttctc 18303885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 206 - 238
Target Start/End: Complemental strand, 43005205 - 43005173
Alignment:
Q  206 ccaaaagttctcttgagttgtcaaagaactttt 238  Q
    |||||||||||||||||||||||||||||||||    
T  43005205 ccaaaagttctcttgagttgtcaaagaactttt 43005173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 248
Target Start/End: Complemental strand, 34132370 - 34132328
Alignment:
Q  206 ccaaaagttctcttgagttgtcaaagaacttttatttcttctc 248  Q
    ||||||||||| ||||||||||||||||||||| | |||||||    
T  34132370 ccaaaagttctattgagttgtcaaagaacttttctctcttctc 34132328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 248
Target Start/End: Complemental strand, 34138682 - 34138640
Alignment:
Q  206 ccaaaagttctcttgagttgtcaaagaacttttatttcttctc 248  Q
    ||||||||||| ||||||||||||||||||||| | |||||||    
T  34138682 ccaaaagttctattgagttgtcaaagaacttttctctcttctc 34138640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 83; Significance: 2e-39; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 74 - 248
Target Start/End: Original strand, 21640523 - 21640695
Alignment:
Q  74 ttattgctcatttatgaggtgatgtcaaacaattaattttctaacagtcaaatgatcttagctgtcggatctaaaattcatctttgactcctcacctata 173  Q
    |||||||| ||||| |||| |||||||||  ||||||||| |||| ||||||||||||| || || |||| | || | ||||||||||||||||||||||    
T  21640523 ttattgcttatttacgaggagatgtcaaattattaattttgtaacggtcaaatgatcttggccgttggatttgaact-catctttgactcctcacctata 21640621  T
Q  174 aatagaactttcattcctcacttgtactcaccccaaaagttctcttgagttgtcaaagaacttttatttcttctc 248  Q
    |||||| |  || |||||||||| ||||||||||||||||||||||||||||||||||||||||| | |||||||    
T  21640622 aatagagcactc-ttcctcacttttactcaccccaaaagttctcttgagttgtcaaagaacttttctctcttctc 21640695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 57 - 248
Target Start/End: Original strand, 4543641 - 4543829
Alignment:
Q  57 catgtcaactttctcaattattgctcatttatgaggtgatgtcaaacaattaattttctaacagtcaaatgatcttagctgtcggatctaaaattcatct 156  Q
    ||||||||||||||   |||||||| ||||| |||| |||||||||  ||||||||| |||| ||||| ||||||| | ||| |||| | || |  |||     
T  4543641 catgtcaactttcttt-ttattgcttatttacgaggagatgtcaaatcattaattttgtaacggtcaattgatcttggttgttggatttgaacta-atca 4543738  T
Q  157 ttgactcctcacctataaatagaactttcattcctcacttgtactcaccccaaaagttctcttgagttgtcaaagaacttttatttcttctc 248  Q
    ||| ||||||| |||||| |||| |  || |||||||||| ||||||||||||||||||||||||||||||||||||||||| | |||||||    
T  4543739 ttggctcctcatctataactagagcactc-ttcctcacttctactcaccccaaaagttctcttgagttgtcaaagaacttttctctcttctc 4543829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 153 - 238
Target Start/End: Complemental strand, 7146471 - 7146386
Alignment:
Q  153 atctttgactcctcacctataaatagaactttcattcctcacttgtactcaccccaaaagttctcttgagttgtcaaagaactttt 238  Q
    ||||||| |||||| ||||||||||||  | |||||| || ||| ||||||||||||||||||| ||||||||||||| |||||||    
T  7146471 atctttggctcctcgcctataaatagagttctcattcttcgcttttactcaccccaaaagttcttttgagttgtcaaataactttt 7146386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 151 - 248
Target Start/End: Complemental strand, 19950476 - 19950379
Alignment:
Q  151 tcatctttgactcctcacctataaatagaactttcattcctcacttgtactcaccccaaaagttctcttgagttgtcaaagaacttttatttcttctc 248  Q
    ||||||||| ||| |||||||||||||||  |    | |||||||| |||||||| |||||||||||||||||||||||||||||||| | |||||||    
T  19950476 tcatctttggctcttcacctataaatagagttcctctccctcacttctactcacctcaaaagttctcttgagttgtcaaagaacttttctctcttctc 19950379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 161 - 248
Target Start/End: Original strand, 32007216 - 32007303
Alignment:
Q  161 ctcctcacctataaatagaactttcattcctcacttgtactcaccccaaaagttctcttgagttgtcaaagaacttttatttcttctc 248  Q
    ||||||||||||||||||| || ||||||| |||   | | ||| ||||||||||||||||||||||||||||||||| | |||||||    
T  32007216 ctcctcacctataaatagagctctcattccacacaatttcacacaccaaaagttctcttgagttgtcaaagaacttttctctcttctc 32007303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 151 - 248
Target Start/End: Complemental strand, 2470634 - 2470537
Alignment:
Q  151 tcatctttgactcctcacctataaatagaactttcattcctcacttgtactcaccccaaaagttctcttgagttgtcaaagaacttttatttcttctc 248  Q
    ||||||||| ||| ||||||||||||||| ||    | |||||||| |||| | |||||||||| ||||||||||||||||||||||| | |||||||    
T  2470634 tcatctttggctcttcacctataaatagagctcctctccctcacttctactgatcccaaaagttatcttgagttgtcaaagaacttttctctcttctc 2470537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 192 - 248
Target Start/End: Complemental strand, 19954889 - 19954833
Alignment:
Q  192 cacttgtactcaccccaaaagttctcttgagttgtcaaagaacttttatttcttctc 248  Q
    ||||| |||||||||||||||||||||||||||||||||||| |||| | |||||||    
T  19954889 cacttctactcaccccaaaagttctcttgagttgtcaaagaatttttctctcttctc 19954833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 161 - 248
Target Start/End: Complemental strand, 39845195 - 39845108
Alignment:
Q  161 ctcctcacctataaatagaactttcattcctcacttgtactcaccccaaaagttctcttgagttgtcaaagaacttttatttcttctc 248  Q
    ||||||||||||||||||| |  ||||||| |||   | | ||| ||||||||||||||||||||||||||||||||| | |||||||    
T  39845195 ctcctcacctataaatagagccctcattccacacaatttcacacaccaaaagttctcttgagttgtcaaagaacttttctctcttctc 39845108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 140 - 230
Target Start/End: Complemental strand, 34517867 - 34517777
Alignment:
Q  140 ggatctaaaattcatctttgactcctcacctataaatagaactttcattcctcacttgtactcaccccaaaagttctcttgagttgtcaaa 230  Q
    ||||||||||| |||||||| ||||||||||||||||| || | |||||| || ||| || | || ||||||||| |||| ||||||||||    
T  34517867 ggatctaaaatccatctttgtctcctcacctataaataaaattctcattcttcgcttctatttacaccaaaagttatcttaagttgtcaaa 34517777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 162 - 230
Target Start/End: Original strand, 13386108 - 13386176
Alignment:
Q  162 tcctcacctataaatagaactttcattcctcacttgtactcaccccaaaagttctcttgagttgtcaaa 230  Q
    |||||||||||||||| | ||||||||||||||   | | ||| |||||||||||||||||||||||||    
T  13386108 tcctcacctataaatatagctttcattcctcacaatttcacacaccaaaagttctcttgagttgtcaaa 13386176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 160 - 248
Target Start/End: Complemental strand, 32025235 - 32025147
Alignment:
Q  160 actcctcacctataaatagaactttcattcctcacttgtactcaccccaaaagttctcttgagttgtcaaagaacttttatttcttctc 248  Q
    |||| ||||||||||||||| |  ||||||| |||   | | ||| ||||||||||||||||||||||||||||||||| | |||||||    
T  32025235 actcatcacctataaatagagccctcattccacacaatttcacacaccaaaagttctcttgagttgtcaaagaacttttctctcttctc 32025147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 161 - 248
Target Start/End: Complemental strand, 39837153 - 39837066
Alignment:
Q  161 ctcctcacctataaatagaactttcattcctcacttgtactcaccccaaaagttctcttgagttgtcaaagaacttttatttcttctc 248  Q
    ||||||||||||||||||| |  ||||||| |||   |   ||| ||||||||||||||||||||||||||||||||| | |||||||    
T  39837153 ctcctcacctataaatagagccctcattccacacaatttgacacaccaaaagttctcttgagttgtcaaagaacttttctctcttctc 39837066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 206 - 248
Target Start/End: Complemental strand, 22156524 - 22156482
Alignment:
Q  206 ccaaaagttctcttgagttgtcaaagaacttttatttcttctc 248  Q
    ||||||||||||||||||||||||||||||||| | |||||||    
T  22156524 ccaaaagttctcttgagttgtcaaagaacttttctctcttctc 22156482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 206 - 248
Target Start/End: Original strand, 32000292 - 32000334
Alignment:
Q  206 ccaaaagttctcttgagttgtcaaagaacttttatttcttctc 248  Q
    ||||||||||||||||||||||||||||||||| | |||||||    
T  32000292 ccaaaagttctcttgagttgtcaaagaacttttctctcttctc 32000334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 206 - 238
Target Start/End: Complemental strand, 22162527 - 22162495
Alignment:
Q  206 ccaaaagttctcttgagttgtcaaagaactttt 238  Q
    |||||||||||||||||||||||||||||||||    
T  22162527 ccaaaagttctcttgagttgtcaaagaactttt 22162495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 208 - 248
Target Start/End: Original strand, 30938825 - 30938865
Alignment:
Q  208 aaaagttctcttgagttgtcaaagaacttttatttcttctc 248  Q
    ||||||||||||||||||||||||||||||| | |||||||    
T  30938825 aaaagttctcttgagttgtcaaagaacttttctctcttctc 30938865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 161 - 248
Target Start/End: Complemental strand, 25858851 - 25858764
Alignment:
Q  161 ctcctcacctataaatagaactttcattcctcacttgtactcaccccaaaagttctcttgagttgtcaaagaacttttatttcttctc 248  Q
    ||||||||||||||||||| |  |||| || |||   | | ||| ||||||||||||||||||||| ||||||||||| | |||||||    
T  25858851 ctcctcacctataaatagagccatcatcccacacaatttcacacaccaaaagttctcttgagttgttaaagaacttttctctcttctc 25858764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 81; Significance: 3e-38; HSPs: 24)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 57 - 228
Target Start/End: Original strand, 28969389 - 28969558
Alignment:
Q  57 catgtcaactttctcaattattgctcatttatgaggtgatgtcaaacaattaattttctaacagtcaaatgatcttagctgtcggatctaaaattcatct 156  Q
    ||||||||||||||||||||||||||||||||||| ||| ||||||| ||||||| |  ||| |||||||||||||||   | |||||||||| |||| |    
T  28969389 catgtcaactttctcaattattgctcatttatgagatgaggtcaaaccattaattgt--aacggtcaaatgatcttagtcattggatctaaaactcatat 28969486  T
Q  157 ttgactcctcacctataaatagaactttcattcctcacttgtactcaccccaaaagttctcttgagttgtca 228  Q
    ||| ||||||||||||||||||| || |||||||| |||| ||  ||| |||||| ||||||||||||||||    
T  28969487 ttgtctcctcacctataaatagagctctcattccttacttatagacacaccaaaacttctcttgagttgtca 28969558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 151 - 230
Target Start/End: Complemental strand, 35130283 - 35130204
Alignment:
Q  151 tcatctttgactcctcacctataaatagaactttcattcctcacttgtactcaccccaaaagttctcttgagttgtcaaa 230  Q
    ||||||||||||| ||||||||||||||| ||    | |||||||| |||||| ||||||||||||||||||||||||||    
T  35130283 tcatctttgactcttcacctataaatagagctcctctccctcacttctactcatcccaaaagttctcttgagttgtcaaa 35130204  T

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Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 160 - 248
Target Start/End: Original strand, 19714166 - 19714254
Alignment:
Q  160 actcctcacctataaatagaactttcattcctcacttgtactcaccccaaaagttctcttgagttgtcaaagaacttttatttcttctc 248  Q
    |||||||||||||||||||| |  ||||||| |||   | | ||| ||||||||||||||||||||||||||||||||| | |||||||    
T  19714166 actcctcacctataaatagagccctcattccacacaatttcacacaccaaaagttctcttgagttgtcaaagaacttttctctcttctc 19714254  T

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Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 160 - 248
Target Start/End: Original strand, 19899434 - 19899522
Alignment:
Q  160 actcctcacctataaatagaactttcattcctcacttgtactcaccccaaaagttctcttgagttgtcaaagaacttttatttcttctc 248  Q
    |||||||||||||||||||| |  ||||||| |||   | | ||| ||||||||||||||||||||||||||||||||| | |||||||    
T  19899434 actcctcacctataaatagagccctcattccacacaatttcacacaccaaaagttctcttgagttgtcaaagaacttttctctcttctc 19899522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 160 - 248
Target Start/End: Complemental strand, 28702472 - 28702384
Alignment:
Q  160 actcctcacctataaatagaactttcattcctcacttgtactcaccccaaaagttctcttgagttgtcaaagaacttttatttcttctc 248  Q
    |||||||||||||||||||| || | ||||| |||   | | ||| | ||||||||||||||||||||||||||||||||| |||||||    
T  28702472 actcctcacctataaatagagctcttattccacacaatttcacacacaaaaagttctcttgagttgtcaaagaacttttatctcttctc 28702384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 161 - 248
Target Start/End: Complemental strand, 25506113 - 25506026
Alignment:
Q  161 ctcctcacctataaatagaactttcattcctcacttgtactcaccccaaaagttctcttgagttgtcaaagaacttttatttcttctc 248  Q
    ||||||||||||||||||| |  ||||||| |||   | | ||| ||||||||||||||||||||||||||||||||| | |||||||    
T  25506113 ctcctcacctataaatagagccctcattccacacaatttcacacaccaaaagttctcttgagttgtcaaagaacttttctctcttctc 25506026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 162 - 248
Target Start/End: Complemental strand, 20452231 - 20452145
Alignment:
Q  162 tcctcacctataaatagaactttcattcctcacttgtactcaccccaaaagttctcttgagttgtcaaagaacttttatttcttctc 248  Q
    |||||||||||||||||| |  ||||||| |||   ||| ||| |||||||||||||||||||||||| |||||||| | |||||||    
T  20452231 tcctcacctataaatagagccatcattccacacaattacacacaccaaaagttctcttgagttgtcaatgaacttttctctcttctc 20452145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 198 - 248
Target Start/End: Original strand, 32814555 - 32814605
Alignment:
Q  198 tactcaccccaaaagttctcttgagttgtcaaagaacttttatttcttctc 248  Q
    ||||||||||||||||||||||||||| ||||||||||||| | |||||||    
T  32814555 tactcaccccaaaagttctcttgagttatcaaagaacttttctctcttctc 32814605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 160 - 248
Target Start/End: Complemental strand, 20459050 - 20458962
Alignment:
Q  160 actcctcacctataaatagaactttcattcctcacttgtactcaccccaaaagttctcttgagttgtcaaagaacttttatttcttctc 248  Q
    |||| |||| |||||||||| |  ||||||| |||   ||| ||| ||||||||||||||||||||||||||||||||| | |||||||    
T  20459050 actcatcacatataaatagagccctcattccacacaattacacacaccaaaagttctcttgagttgtcaaagaacttttctctcttctc 20458962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 189 - 248
Target Start/End: Complemental strand, 14042263 - 14042204
Alignment:
Q  189 cctcacttgtactcaccccaaaagttctcttgagttgtcaaagaacttttatttcttctc 248  Q
    |||||||| || |||| |||||||||| |||||||||||||||||||||| | |||||||    
T  14042263 cctcacttctattcacaccaaaagttcccttgagttgtcaaagaacttttctctcttctc 14042204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 161 - 248
Target Start/End: Complemental strand, 22764455 - 22764368
Alignment:
Q  161 ctcctcacctataaatagaactttcattcctcacttgtactcaccccaaaagttctcttgagttgtcaaagaacttttatttcttctc 248  Q
    ||||||||||||||||||| || ||||||| |||   | |  || ||||||||||| ||||||||||||||||||||| | |||||||    
T  22764455 ctcctcacctataaatagagctctcattccacacaatttcagacaccaaaagttctattgagttgtcaaagaacttttctctcttctc 22764368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 161 - 248
Target Start/End: Complemental strand, 22778704 - 22778617
Alignment:
Q  161 ctcctcacctataaatagaactttcattcctcacttgtactcaccccaaaagttctcttgagttgtcaaagaacttttatttcttctc 248  Q
    ||||||||||||||||||| |  ||||||| |||   | | ||| ||||||||||| ||||||||||||||||||||| | |||||||    
T  22778704 ctcctcacctataaatagagccctcattccacacaatttcacacaccaaaagttctattgagttgtcaaagaacttttctctcttctc 22778617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 206 - 248
Target Start/End: Complemental strand, 3917130 - 3917088
Alignment:
Q  206 ccaaaagttctcttgagttgtcaaagaacttttatttcttctc 248  Q
    ||||||||||||||||||||||||||||||||| | |||||||    
T  3917130 ccaaaagttctcttgagttgtcaaagaacttttctctcttctc 3917088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 206 - 248
Target Start/End: Complemental strand, 22232147 - 22232105
Alignment:
Q  206 ccaaaagttctcttgagttgtcaaagaacttttatttcttctc 248  Q
    ||||||||||||||||||||||||||||||||| | |||||||    
T  22232147 ccaaaagttctcttgagttgtcaaagaacttttctctcttctc 22232105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 153 - 230
Target Start/End: Complemental strand, 14776198 - 14776121
Alignment:
Q  153 atctttgactcctcacctataaatagaactttcattcctcacttgtactcaccccaaaagttctcttgagttgtcaaa 230  Q
    ||||||| ||||||||||||||  ||| ||  |||||||||||| |   ||| |||||||||||||||||||||||||    
T  14776198 atctttggctcctcacctataagaagagctcacattcctcacttctttgcacaccaaaagttctcttgagttgtcaaa 14776121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 160 - 248
Target Start/End: Complemental strand, 10984659 - 10984571
Alignment:
Q  160 actcctcacctataaatagaactttcattcctcacttgtactcaccccaaaagttctcttgagttgtcaaagaacttttatttcttctc 248  Q
    ||||||||| |||||||||| |  ||||||| |||   | | ||| ||||||||||||||||||||||||| ||||||| | |||||||    
T  10984659 actcctcacatataaatagagccctcattccacacaatttcacacaccaaaagttctcttgagttgtcaaaaaacttttctctcttctc 10984571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 160 - 248
Target Start/End: Original strand, 19720322 - 19720410
Alignment:
Q  160 actcctcacctataaatagaactttcattcctcacttgtactcaccccaaaagttctcttgagttgtcaaagaacttttatttcttctc 248  Q
    |||||| ||||||||||||| |  ||||||| |||   | | ||| |||||||||||||||||| |||||||||||||| | |||||||    
T  19720322 actcctgacctataaatagagccctcattccacacaatttcacacaccaaaagttctcttgagtagtcaaagaacttttctctcttctc 19720410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 92
Target Start/End: Original strand, 29610129 - 29610165
Alignment:
Q  56 tcatgtcaactttctcaattattgctcatttatgagg 92  Q
    ||||||||||||||||||||| |||||||||||||||    
T  29610129 tcatgtcaactttctcaattagtgctcatttatgagg 29610165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 208 - 248
Target Start/End: Complemental strand, 30824062 - 30824022
Alignment:
Q  208 aaaagttctcttgagttgtcaaagaacttttatttcttctc 248  Q
    ||||||||||||||||||||||||||||||| | |||||||    
T  30824062 aaaagttctcttgagttgtcaaagaacttttctctcttctc 30824022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 248
Target Start/End: Complemental strand, 35091250 - 35091162
Alignment:
Q  161 ctcctcacctataaatagaactttcattcctcacttgtactcac-cccaaaagttctcttgagttgtcaaagaacttttatttcttctc 248  Q
    ||||||||||||||||||| |  |||| || |||   ||| ||| || ||||||||||||||||||||||||||||||| | |||||||    
T  35091250 ctcctcacctataaatagagccctcataccacacaattacacacaccaaaaagttctcttgagttgtcaaagaacttttctctcttctc 35091162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 248
Target Start/End: Original strand, 26896975 - 26897017
Alignment:
Q  206 ccaaaagttctcttgagttgtcaaagaacttttatttcttctc 248  Q
    |||||||||||||||||||||||||||| |||| | |||||||    
T  26896975 ccaaaagttctcttgagttgtcaaagaatttttctctcttctc 26897017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 193 - 247
Target Start/End: Original strand, 29610458 - 29610514
Alignment:
Q  193 acttgtactcaccccaaaagt--tctcttgagttgtcaaagaacttttatttcttct 247  Q
    |||| ||||||||||||||||  ||||||||||||||||| ||||||| | ||||||    
T  29610458 acttctactcaccccaaaagttctctcttgagttgtcaaaaaacttttctctcttct 29610514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 208 - 248
Target Start/End: Original strand, 18909612 - 18909652
Alignment:
Q  208 aaaagttctcttgagttgtcaaagaacttttatttcttctc 248  Q
    |||| |||||||||||||||||||||||||| | |||||||    
T  18909612 aaaaattctcttgagttgtcaaagaacttttctctcttctc 18909652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 208 - 248
Target Start/End: Complemental strand, 29600969 - 29600929
Alignment:
Q  208 aaaagttctcttgagttgtcaaagaacttttatttcttctc 248  Q
    |||| |||||||||||||||||||||||||| | |||||||    
T  29600969 aaaatttctcttgagttgtcaaagaacttttctctcttctc 29600929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0586 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: scaffold0586
Description:

Target: scaffold0586; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 55 - 248
Target Start/End: Complemental strand, 5422 - 5229
Alignment:
Q  55 ttcatgtcaactttctcaattattgctcatttatgaggtgatgtcaaacaattaattttctaacagtcaaatgatcttagctgtcggatctaaaattcat 154  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||  ||||||||| |||  |||||||||| || |  ||  ||||| ||||||||    
T  5422 ttcatgtcaactttctcaattattgctcatttatgaggtgatgttaaatcattaattttgtaatggtcaaatgatattggtcgttcgatctgaaattcat 5323  T
Q  155 ctttgactcctcacctataaatagaactttcattcctcacttgtactcaccccaaaagttctcttgagttgtcaaagaacttttatttcttctc 248  Q
     |||| |||||||| |||||||| | ||  ||| |||||||| |||| |  ||||||||||| |||||||||||||||||| || | |||||||    
T  5322 ttttggctcctcacttataaatatagctcacatccctcacttctacttaaaccaaaagttctattgagttgtcaaagaactattctctcttctc 5229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 57 - 171
Target Start/End: Original strand, 44453 - 44567
Alignment:
Q  57 catgtcaactttctcaattattgctcatttatgaggtgatgtcaaacaattaattttctaacagtcaaatgatcttagctgtcggatctaaaattcatct 156  Q
    ||||||||||||||||||||| ||||||||||||||||| | ||| | ||||||||| |||| ||||||| ||||||||||| |||||||||| ||||||    
T  44453 catgtcaactttctcaattatcgctcatttatgaggtgaagacaatccattaattttgtaacggtcaaataatcttagctgttggatctaaaactcatct 44552  T
Q  157 ttgactcctcaccta 171  Q
    | | |||||||||||    
T  44553 tggcctcctcaccta 44567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 66; Significance: 3e-29; HSPs: 28)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 57 - 238
Target Start/End: Original strand, 18264851 - 18265029
Alignment:
Q  57 catgtcaactttctcaattattgctcatttatgaggtgatgtcaaacaattaattttctaacagtcaaatgatcttagctgtcggatctaaaattcatct 156  Q
    ||||||||||||||   |||||||| ||| |||||| |||||||||  ||||||||| |||| ||||||||||||| || || |||| | || | |||||    
T  18264851 catgtcaactttcttt-ttattgcttattaatgaggagatgtcaaatcattaattttgtaacggtcaaatgatcttggccgttggatttgaact-catct 18264948  T
Q  157 ttgactcctcacctataaatagaactttcattcctcacttgtactcaccccaaaagttctcttgagttgtcaaagaactttt 238  Q
    ||| ||||||| ||||||||||| |  || |||||||||| |||||||||||||||||||||| |||||||||| |||||||    
T  18264949 ttggctcctcatctataaatagagcactc-ttcctcacttctactcaccccaaaagttctcttaagttgtcaaataactttt 18265029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 56 - 248
Target Start/End: Original strand, 1285599 - 1285791
Alignment:
Q  56 tcatgtcaactttctcaattattgctcatttatgaggtgatgtcaaacaattaattttctaacagtcaaatgatcttagctgtcggatctaaaattcatc 155  Q
    ||||||||| ||| |||||||||||| ||||||| ||| | ||||||  ||||||| | |||| || |||||||||| |  || |||||| ||| |||||    
T  1285599 tcatgtcaattttttcaattattgcttatttatgtggtaaggtcaaatcattaattgtgtaacggttaaatgatcttggtcgttggatctgaaactcatc 1285698  T
Q  156 tttgactcctcacctataaatagaactttcattcctcacttgtactcaccccaaaagttctcttgagttgtcaaagaacttttatttcttctc 248  Q
    |||||||| ||||||||| | ||   ||||||||| |||||  ||| |  ||||||||||| ||||||||||||| ||||||||| |||||||    
T  1285699 tttgactcatcacctatagacagtgatttcattccacacttcaacttaaaccaaaagttctattgagttgtcaaaaaacttttatctcttctc 1285791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 151 - 230
Target Start/End: Original strand, 16747666 - 16747746
Alignment:
Q  151 tcatctttgactcctcacctataaatagaactttcattcctcacttgta-ctcaccccaaaagttctcttgagttgtcaaa 230  Q
    |||||||| ||||||||||||||||||||| ||||||||||||||| || | ||| |||||||||||||||| ||||||||    
T  16747666 tcatcttttactcctcacctataaatagaattttcattcctcacttctaccccacaccaaaagttctcttgaattgtcaaa 16747746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 153 - 248
Target Start/End: Complemental strand, 15591248 - 15591153
Alignment:
Q  153 atctttgactcctcacctataaatagaactttcattcctcacttgtactcaccccaaaagttctcttgagttgtcaaagaacttttatttcttctc 248  Q
    ||||||| ||||||||||||||||||| || |||||| ||||||| ||||| |||||||||||| |||||||  |||| ||||||| | |||||||    
T  15591248 atctttgtctcctcacctataaatagagctctcattcttcacttgcactcatcccaaaagttcttttgagttaacaaataacttttttctcttctc 15591153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 161 - 248
Target Start/End: Complemental strand, 15956578 - 15956491
Alignment:
Q  161 ctcctcacctataaatagaactttcattcctcacttgtactcaccccaaaagttctcttgagttgtcaaagaacttttatttcttctc 248  Q
    ||||||||||||||||||| | |||||||| |||   | | ||| ||||||||||||||||||||||||||||||||||| |||||||    
T  15956578 ctcctcacctataaatagagccttcattccacacaatttcacacaccaaaagttctcttgagttgtcaaagaacttttatctcttctc 15956491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 161 - 248
Target Start/End: Complemental strand, 25041849 - 25041762
Alignment:
Q  161 ctcctcacctataaatagaactttcattcctcacttgtactcaccccaaaagttctcttgagttgtcaaagaacttttatttcttctc 248  Q
    ||||||||||||||||||| || ||||||| |||   | | ||| ||||||||||||||||||||||||||||||||| | |||||||    
T  25041849 ctcctcacctataaatagagctatcattccacacaatttcacacaccaaaagttctcttgagttgtcaaagaacttttctctcttctc 25041762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 164 - 248
Target Start/End: Original strand, 37048846 - 37048930
Alignment:
Q  164 ctcacctataaatagaactttcattcctcacttgtactcaccccaaaagttctcttgagttgtcaaagaacttttatttcttctc 248  Q
    |||||||||||||||| || ||||||| |||   | | ||| ||||||||||||||||||||||||||||||||| | |||||||    
T  37048846 ctcacctataaatagagctctcattccacacaatttcacacaccaaaagttctcttgagttgtcaaagaacttttctctcttctc 37048930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 161 - 248
Target Start/End: Complemental strand, 20639445 - 20639358
Alignment:
Q  161 ctcctcacctataaatagaactttcattcctcacttgtactcaccccaaaagttctcttgagttgtcaaagaacttttatttcttctc 248  Q
    ||||||||||||||||||| || ||||||| |||   | | ||| |||||||||||||||| |||||||||||||||| | |||||||    
T  20639445 ctcctcacctataaatagagctctcattccacacaatttcacacaccaaaagttctcttgaattgtcaaagaacttttctctcttctc 20639358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 161 - 248
Target Start/End: Complemental strand, 24956420 - 24956333
Alignment:
Q  161 ctcctcacctataaatagaactttcattcctcacttgtactcaccccaaaagttctcttgagttgtcaaagaacttttatttcttctc 248  Q
    ||||||||||||||||||| |  |||| || |||   ||| ||| ||||||||||||||||||||||||||||||||| | |||||||    
T  24956420 ctcctcacctataaatagagccctcataccacacaattacacacaccaaaagttctcttgagttgtcaaagaacttttctctcttctc 24956333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 161 - 248
Target Start/End: Complemental strand, 24964880 - 24964793
Alignment:
Q  161 ctcctcacctataaatagaactttcattcctcacttgtactcaccccaaaagttctcttgagttgtcaaagaacttttatttcttctc 248  Q
    ||||||||||||||||||| |  |||| || |||   ||| ||| ||||||||||||||||||||||||||||||||| | |||||||    
T  24964880 ctcctcacctataaatagagccctcataccacacaattacacacaccaaaagttctcttgagttgtcaaagaacttttctctcttctc 24964793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 161 - 248
Target Start/End: Original strand, 25526666 - 25526753
Alignment:
Q  161 ctcctcacctataaatagaactttcattcctcacttgtactcaccccaaaagttctcttgagttgtcaaagaacttttatttcttctc 248  Q
    ||||||||||||||||||| |  ||||||| |||   | | ||| ||||||||||||||||||||||||||||||||| | |||||||    
T  25526666 ctcctcacctataaatagagccctcattccacacaatttcacacaccaaaagttctcttgagttgtcaaagaacttttctctcttctc 25526753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 161 - 248
Target Start/End: Original strand, 25533348 - 25533435
Alignment:
Q  161 ctcctcacctataaatagaactttcattcctcacttgtactcaccccaaaagttctcttgagttgtcaaagaacttttatttcttctc 248  Q
    ||||||||||||||||||| |  ||||||| |||   | | ||| ||||||||||||||||||||||||||||||||| | |||||||    
T  25533348 ctcctcacctataaatagagccctcattccacacaatttcacacaccaaaagttctcttgagttgtcaaagaacttttctctcttctc 25533435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 161 - 248
Target Start/End: Complemental strand, 26186230 - 26186143
Alignment:
Q  161 ctcctcacctataaatagaactttcattcctcacttgtactcaccccaaaagttctcttgagttgtcaaagaacttttatttcttctc 248  Q
    |||||||||||||||||||||  ||||||| |||   | | ||| |||||||||||||||||||||||||||| |||| | |||||||    
T  26186230 ctcctcacctataaatagaaccctcattccacacaatttcacacaccaaaagttctcttgagttgtcaaagaatttttctctcttctc 26186143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 161 - 248
Target Start/End: Original strand, 28844415 - 28844502
Alignment:
Q  161 ctcctcacctataaatagaactttcattcctcacttgtactcaccccaaaagttctcttgagttgtcaaagaacttttatttcttctc 248  Q
    ||||||||||||||||||| |  ||||||| |||   | | ||| ||||||||||||||||||||||||||||||||| | |||||||    
T  28844415 ctcctcacctataaatagagccctcattccacacaatttcacacaccaaaagttctcttgagttgtcaaagaacttttctctcttctc 28844502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 161 - 248
Target Start/End: Original strand, 28853025 - 28853112
Alignment:
Q  161 ctcctcacctataaatagaactttcattcctcacttgtactcaccccaaaagttctcttgagttgtcaaagaacttttatttcttctc 248  Q
    ||||||||||||||||||| |  ||||||| |||   | | ||| ||||||||||||||||||||||||||||||||| | |||||||    
T  28853025 ctcctcacctataaatagagccctcattccacacaatttcacacaccaaaagttctcttgagttgtcaaagaacttttctctcttctc 28853112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 161 - 248
Target Start/End: Original strand, 36448730 - 36448817
Alignment:
Q  161 ctcctcacctataaatagaactttcattcctcacttgtactcaccccaaaagttctcttgagttgtcaaagaacttttatttcttctc 248  Q
    ||||||||||||||||||| |  ||||||| |||   | | ||| ||||||||||||||||||||||||||||||||| | |||||||    
T  36448730 ctcctcacctataaatagagccctcattccacacaatttcacacaccaaaagttctcttgagttgtcaaagaacttttctctcttctc 36448817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 161 - 248
Target Start/End: Original strand, 36455114 - 36455201
Alignment:
Q  161 ctcctcacctataaatagaactttcattcctcacttgtactcaccccaaaagttctcttgagttgtcaaagaacttttatttcttctc 248  Q
    ||||||||||||||||||| |  ||||||| |||   | | ||| ||||||||||||||||||||||||||||||||| | |||||||    
T  36455114 ctcctcacctataaatagagccctcattccacacaatttcacacaccaaaagttctcttgagttgtcaaagaacttttctctcttctc 36455201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 161 - 248
Target Start/End: Original strand, 30249800 - 30249887
Alignment:
Q  161 ctcctcacctataaatagaactttcattcctcacttgtactcaccccaaaagttctcttgagttgtcaaagaacttttatttcttctc 248  Q
    ||||||||||||||||||| |  | ||||| |||   | | ||| ||||||||||||||||||||||||||||||||| | |||||||    
T  30249800 ctcctcacctataaatagagcccttattccacacaatttcacacaccaaaagttctcttgagttgtcaaagaacttttctctcttctc 30249887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 168 - 248
Target Start/End: Complemental strand, 38227516 - 38227438
Alignment:
Q  168 cctataaatagaactttcattcctcacttgtactcaccccaaaagttctcttgagttgtcaaagaacttttatttcttctc 248  Q
    |||||||||| | || ||||||||||||| ||| ||||  ||||||| |||||| |||||||||||||||| ||| |||||    
T  38227516 cctataaatatagctctcattcctcacttatacacacc--aaaagttatcttgacttgtcaaagaacttttcttttttctc 38227438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 208 - 248
Target Start/End: Complemental strand, 1727700 - 1727660
Alignment:
Q  208 aaaagttctcttgagttgtcaaagaacttttatttcttctc 248  Q
    ||||||||||||||||||||||||||||||| | |||||||    
T  1727700 aaaagttctcttgagttgtcaaagaacttttctctcttctc 1727660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 248
Target Start/End: Complemental strand, 43597635 - 43597547
Alignment:
Q  161 ctcctcacctataaatagaactttcattcctcacttgtactcac-cccaaaagttctcttgagttgtcaaagaacttttatttcttctc 248  Q
    ||||||||||||||||||| |  ||||||| |||   | | ||| || ||||||||||||||||||||||||||||||| | |||||||    
T  43597635 ctcctcacctataaatagagccctcattccacacaatttcacacaccaaaaagttctcttgagttgtcaaagaacttttctctcttctc 43597547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 248
Target Start/End: Complemental strand, 43630429 - 43630341
Alignment:
Q  161 ctcctcacctataaatagaactttcattcctcacttgtactcac-cccaaaagttctcttgagttgtcaaagaacttttatttcttctc 248  Q
    ||||||||||||||||||| |  ||||||| |||   | | ||| || ||||||||||||||||||||||||||||||| | |||||||    
T  43630429 ctcctcacctataaatagagccctcattccacacaatttcacacaccaaaaagttctcttgagttgtcaaagaacttttctctcttctc 43630341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 161 - 248
Target Start/End: Complemental strand, 20092352 - 20092265
Alignment:
Q  161 ctcctcacctataaatagaactttcattcctcacttgtactcaccccaaaagttctcttgagttgtcaaagaacttttatttcttctc 248  Q
    ||||||||||||||||||| |  ||||||| |||   | | | | ||||||||||| ||||||||||||||||||||| | |||||||    
T  20092352 ctcctcacctataaatagagccctcattccacacaatttcacgcaccaaaagttctattgagttgtcaaagaacttttctctcttctc 20092265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 161 - 248
Target Start/End: Complemental strand, 20099229 - 20099142
Alignment:
Q  161 ctcctcacctataaatagaactttcattcctcacttgtactcaccccaaaagttctcttgagttgtcaaagaacttttatttcttctc 248  Q
    ||||||||||||||||||| |  ||||||| |||   | | | | ||||||||||| ||||||||||||||||||||| | |||||||    
T  20099229 ctcctcacctataaatagagccctcattccacacaatttcacgcaccaaaagttctattgagttgtcaaagaacttttctctcttctc 20099142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 161 - 248
Target Start/End: Complemental strand, 23377881 - 23377794
Alignment:
Q  161 ctcctcacctataaatagaactttcattcctcacttgtactcaccccaaaagttctcttgagttgtcaaagaacttttatttcttctc 248  Q
    ||||||||||||||||||| |  ||||||| |||   | |  || ||||||||||| ||||||||||||||||||||| | |||||||    
T  23377881 ctcctcacctataaatagagccctcattccacacaatttcagacaccaaaagttctattgagttgtcaaagaacttttctctcttctc 23377794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 161 - 248
Target Start/End: Original strand, 40015377 - 40015464
Alignment:
Q  161 ctcctcacctataaatagaactttcattcctcacttgtactcaccccaaaagttctcttgagttgtcaaagaacttttatttcttctc 248  Q
    ||||||||||||||||||| |  ||||||| |||   | | ||| ||||||||| ||||||||||||||| ||||||| | |||||||    
T  40015377 ctcctcacctataaatagagccctcattccacacaatttcacacaccaaaagttatcttgagttgtcaaataacttttctctcttctc 40015464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 208 - 248
Target Start/End: Original strand, 10058307 - 10058347
Alignment:
Q  208 aaaagttctcttgagttgtcaaagaacttttatttcttctc 248  Q
    ||||||||| ||||||||||||||||||||| | |||||||    
T  10058307 aaaagttctattgagttgtcaaagaacttttctctcttctc 10058347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 248
Target Start/End: Complemental strand, 23349663 - 23349575
Alignment:
Q  161 ctcctcacctataaatagaactttcattcctcacttgtactcac-cccaaaagttctcttgagttgtcaaagaacttttatttcttctc 248  Q
    ||||||||||||||||||| |  ||||||| |||   | | ||| || |||||||||||||||||||||||||| |||| | |||||||    
T  23349663 ctcctcacctataaatagagccatcattccacacaatttcacacaccaaaaagttctcttgagttgtcaaagaatttttctctcttctc 23349575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 59 - 132
Target Start/End: Original strand, 15017386 - 15017459
Alignment:
Q  59 tgtcaactttctcaattattgctcatttatgaggtgatgtcaaacaattaattttctaacagtcaaatgatctt 132  Q
    ||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| ||||||||||| ||||||    
T  15017386 tgtcaactttctcaattattgctcatttatgaggtgaagtcaaactattaattttgtaacagtcaaaagatctt 15017459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 56 - 232
Target Start/End: Original strand, 55081044 - 55081220
Alignment:
Q  56 tcatgtcaactttctcaattattgctcatttatgaggtgatgtcaaacaattaattttctaacagtcaaatgatcttagctgtcggatctaaaattcatc 155  Q
    ||||||||||||||||||||| ||||||||||||||||||  | || | ||| |||||||||| ||||  | ||| ||||  | |||| |  || | |||    
T  55081044 tcatgtcaactttctcaattagtgctcatttatgaggtgagataaagccattgattttctaacggtcatttaatcctagccattggatttgtaacttatc 55081143  T
Q  156 tttgactcctcacctataaatagaactttcattcctcacttgtactcaccccaaaagttctcttgagttgtcaaaga 232  Q
    |||| ||| |||||||||||| || ||    | |||||||| ||||||| | |||||||||||||||||||||||||    
T  55081144 tttggctcttcacctataaattgagctcctctccctcacttctactcacactaaaagttctcttgagttgtcaaaga 55081220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 163 - 248
Target Start/End: Original strand, 40684312 - 40684397
Alignment:
Q  163 cctcacctataaatagaactttcattcctcacttgtactcaccccaaaagttctcttgagttgtcaaagaacttttatttcttctc 248  Q
    |||| ||||||||||||  | | |||||||||||||||| || ||||||||| ||||||||||||||||||||||| | |||||||    
T  40684312 cctcgcctataaatagagttcttattcctcacttgtactgacaccaaaagttttcttgagttgtcaaagaacttttctctcttctc 40684397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 191 - 248
Target Start/End: Original strand, 2574815 - 2574872
Alignment:
Q  191 tcacttgtactcaccccaaaagttctcttgagttgtcaaagaacttttatttcttctc 248  Q
    ||||||||||| ||  |||||||||||||||||||||||||||||||||| |||||||    
T  2574815 tcacttgtacttacatcaaaagttctcttgagttgtcaaagaacttttatctcttctc 2574872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 160 - 248
Target Start/End: Complemental strand, 3382025 - 3381937
Alignment:
Q  160 actcctcacctataaatagaactttcattcctcacttgtactcaccccaaaagttctcttgagttgtcaaagaacttttatttcttctc 248  Q
    |||||||||||||||||||| |  ||||||| |||   | | ||| ||||||||||||||||||||||||||||||||| | |||||||    
T  3382025 actcctcacctataaatagagccctcattccacacaatttcacacaccaaaagttctcttgagttgtcaaagaacttttctctcttctc 3381937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 161 - 248
Target Start/End: Complemental strand, 19737593 - 19737506
Alignment:
Q  161 ctcctcacctataaatagaactttcattcctcacttgtactcaccccaaaagttctcttgagttgtcaaagaacttttatttcttctc 248  Q
    ||||||||||||||||||| |  ||||||| |||   | | ||| ||||||||||||||||||||||||||||||||| | |||||||    
T  19737593 ctcctcacctataaatagagccctcattccacacaatttcacacaccaaaagttctcttgagttgtcaaagaacttttctctcttctc 19737506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 161 - 248
Target Start/End: Original strand, 20548857 - 20548944
Alignment:
Q  161 ctcctcacctataaatagaactttcattcctcacttgtactcaccccaaaagttctcttgagttgtcaaagaacttttatttcttctc 248  Q
    ||||||||||||||||||| |  ||||||| |||   | | ||| ||||||||||||||||||||||||||||||||| | |||||||    
T  20548857 ctcctcacctataaatagagccctcattccacacaatttcacacaccaaaagttctcttgagttgtcaaagaacttttctctcttctc 20548944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 161 - 248
Target Start/End: Original strand, 50188271 - 50188358
Alignment:
Q  161 ctcctcacctataaatagaactttcattcctcacttgtactcaccccaaaagttctcttgagttgtcaaagaacttttatttcttctc 248  Q
    ||||||||||||||||||| |  ||||||| |||   | | ||| ||||||||||||||||||||||||||||||||| | |||||||    
T  50188271 ctcctcacctataaatagagccctcattccacacaatttcacacaccaaaagttctcttgagttgtcaaagaacttttctctcttctc 50188358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 167 - 248
Target Start/End: Complemental strand, 12613792 - 12613711
Alignment:
Q  167 acctataaatagaactttcattcctcacttgtactcaccccaaaagttctcttgagttgtcaaagaacttttatttcttctc 248  Q
    ||||||||||||| || ||||| ||||||| |||  || | ||||||||||||||||||||||| ||||||| | |||||||    
T  12613792 acctataaatagagctctcattactcacttatacagacacaaaaagttctcttgagttgtcaaataacttttctctcttctc 12613711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 160 - 248
Target Start/End: Complemental strand, 3388771 - 3388683
Alignment:
Q  160 actcctcacctataaatagaactttcattcctcacttgtactcaccccaaaagttctcttgagttgtcaaagaacttttatttcttctc 248  Q
    |||||||||||||||||||| |  ||||||| |||   | | ||| |||||| |||||||||||||||||||||||||| | |||||||    
T  3388771 actcctcacctataaatagagccctcattccacacaatttcacacaccaaaaattctcttgagttgtcaaagaacttttctctcttctc 3388683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 156 - 248
Target Start/End: Complemental strand, 8817102 - 8817010
Alignment:
Q  156 tttgactcctcacctataaatagaactttcattcctcacttgtactcaccccaaaagttctcttgagttgtcaaagaacttttatttcttctc 248  Q
    |||| ||||||||||||||||||| ||  |||||| |||   | | ||| ||||||||| ||||||||||||||||||||||| | |||||||    
T  8817102 tttggctcctcacctataaatagagctcacattccacacaatttcacacaccaaaagttatcttgagttgtcaaagaacttttctctcttctc 8817010  T

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Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 192 - 248
Target Start/End: Original strand, 16595447 - 16595503
Alignment:
Q  192 cacttgtactcaccccaaaagttctcttgagttgtcaaagaacttttatttcttctc 248  Q
    ||||| || |||||||||||||||||||||||||| ||||||||||| | |||||||    
T  16595447 cacttctaatcaccccaaaagttctcttgagttgttaaagaacttttctctcttctc 16595503  T

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Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 160 - 248
Target Start/End: Original strand, 38853839 - 38853927
Alignment:
Q  160 actcctcacctataaatagaactttcattcctcacttgtactcaccccaaaagttctcttgagttgtcaaagaacttttatttcttctc 248  Q
    |||||||||||||||||||| | |||||||| |||   |   ||| |||||||||||||||||||||||||||| |||| | |||||||    
T  38853839 actcctcacctataaatagagcattcattccacacaatttgacacaccaaaagttctcttgagttgtcaaagaatttttctctcttctc 38853927  T

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Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 164 - 248
Target Start/End: Complemental strand, 39745007 - 39744923
Alignment:
Q  164 ctcacctataaatagaactttcattcctcacttgtactcaccccaaaagttctcttgagttgtcaaagaacttttatttcttctc 248  Q
    |||||||||||||||| |  ||||||| |||   | | ||| ||||||||||||||||||||||||||||||||| | |||||||    
T  39745007 ctcacctataaatagagccctcattccacacaatttcacacaccaaaagttctcttgagttgtcaaagaacttttctctcttctc 39744923  T

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Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 161 - 248
Target Start/End: Original strand, 8657976 - 8658063
Alignment:
Q  161 ctcctcacctataaatagaactttcattcctcacttgtactcaccccaaaagttctcttgagttgtcaaagaacttttatttcttctc 248  Q
    ||||||||||||||||||| |  ||| ||| |||   | | ||| ||||||||||||||||||||||||||||||||| | |||||||    
T  8657976 ctcctcacctataaatagagccctcaatccacacaatttcacacaccaaaagttctcttgagttgtcaaagaacttttctctcttctc 8658063  T

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Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 189 - 248
Target Start/End: Complemental strand, 20513726 - 20513667
Alignment:
Q  189 cctcacttgtactcaccccaaaagttctcttgagttgtcaaagaacttttatttcttctc 248  Q
    |||||||| |||||| | |||||||||||||||||||||||| ||||||| | |||||||    
T  20513726 cctcacttttactcaactcaaaagttctcttgagttgtcaaaaaacttttctctcttctc 20513667  T

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Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 193 - 248
Target Start/End: Original strand, 39991410 - 39991465
Alignment:
Q  193 acttgtactcaccccaaaagttctcttgagttgtcaaagaacttttatttcttctc 248  Q
    |||| ||||||| |||||||||||||| |||||||||||||||||| | |||||||    
T  39991410 acttctactcacaccaaaagttctctttagttgtcaaagaacttttctctcttctc 39991465  T

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Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 188 - 238
Target Start/End: Original strand, 15017489 - 15017539
Alignment:
Q  188 tcctcacttgtactcaccccaaaagttctcttgagttgtcaaagaactttt 238  Q
    |||||| || ||||||||||||||||| |||||| ||||||||||||||||    
T  15017489 tcctcatttctactcaccccaaaagttatcttgatttgtcaaagaactttt 15017539  T

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Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 208 - 248
Target Start/End: Complemental strand, 8093816 - 8093776
Alignment:
Q  208 aaaagttctcttgagttgtcaaagaacttttatttcttctc 248  Q
    ||||||||||||||||||||||||||||||| | |||||||    
T  8093816 aaaagttctcttgagttgtcaaagaacttttctctcttctc 8093776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 208 - 248
Target Start/End: Complemental strand, 8102621 - 8102581
Alignment:
Q  208 aaaagttctcttgagttgtcaaagaacttttatttcttctc 248  Q
    ||||||||||||||||||||||||||||||| | |||||||    
T  8102621 aaaagttctcttgagttgtcaaagaacttttctctcttctc 8102581  T

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Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 189 - 248
Target Start/End: Original strand, 33722383 - 33722443
Alignment:
Q  189 cctcacttgtactcaccccaaaa-gttctcttgagttgtcaaagaacttttatttcttctc 248  Q
    |||||||| |||||| ||||||| ||||| ||||||||||||||||||||| | |||||||    
T  33722383 cctcacttctactcatcccaaaaagttcttttgagttgtcaaagaacttttctctcttctc 33722443  T

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Target: chr3 (Bit Score: 54; Significance: 4e-22; HSPs: 32)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 161 - 238
Target Start/End: Complemental strand, 4662812 - 4662735
Alignment:
Q  161 ctcctcacctataaatagaactttcattcctcacttgtactcaccccaaaagttctcttgagttgtcaaagaactttt 238  Q
    ||||| |||||||||||||||| ||||| |||||||||| | |||||||||||||||||||||| |||||||||||||    
T  4662812 ctccttacctataaatagaactctcatttctcacttgtaattaccccaaaagttctcttgagttttcaaagaactttt 4662735  T

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Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 160 - 248
Target Start/End: Complemental strand, 14887615 - 14887527
Alignment:
Q  160 actcctcacctataaatagaactttcattcctcacttgtactcaccccaaaagttctcttgagttgtcaaagaacttttatttcttctc 248  Q
    ||||||||||||||||||||||  ||||||| |||   | | ||| ||||||||||||||||||||||||||||||||| | |||||||    
T  14887615 actcctcacctataaatagaaccctcattccacacaatttcacacaccaaaagttctcttgagttgtcaaagaacttttctctcttctc 14887527  T

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Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 160 - 248
Target Start/End: Complemental strand, 21638145 - 21638057
Alignment:
Q  160 actcctcacctataaatagaactttcattcctcacttgtactcaccccaaaagttctcttgagttgtcaaagaacttttatttcttctc 248  Q
    |||||||||||||||||||| || ||||||| |||   | | ||| ||||||||||||||||||||||||||||||||| | |||||||    
T  21638145 actcctcacctataaatagagctctcattccacacaatttcacacaccaaaagttctcttgagttgtcaaagaacttttctctcttctc 21638057  T

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Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 151 - 248
Target Start/End: Original strand, 48431740 - 48431837
Alignment:
Q  151 tcatctttgactcctcacctataaatagaactttcattcctcacttgtactcaccccaaaagttctcttgagttgtcaaagaacttttatttcttctc 248  Q
    |||| |||| ||| ||||||||||||||| ||    | || ||||| ||||||||||||||||||||||||||||||||| ||||||| | |||||||    
T  48431740 tcatatttggctcttcacctataaatagagctcatctcccacacttctactcaccccaaaagttctcttgagttgtcaaataacttttctctcttctc 48431837  T

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Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 160 - 248
Target Start/End: Original strand, 68631 - 68719
Alignment:
Q  160 actcctcacctataaatagaactttcattcctcacttgtactcaccccaaaagttctcttgagttgtcaaagaacttttatttcttctc 248  Q
    |||||||||||||||||||| |  ||||||| |||   | | ||| ||||||||||||||||||||||||||||||||| | |||||||    
T  68631 actcctcacctataaatagagccctcattccacacaatttcacacaccaaaagttctcttgagttgtcaaagaacttttctctcttctc 68719  T

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Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 160 - 248
Target Start/End: Original strand, 74724 - 74812
Alignment:
Q  160 actcctcacctataaatagaactttcattcctcacttgtactcaccccaaaagttctcttgagttgtcaaagaacttttatttcttctc 248  Q
    |||||||||||||||||||| |  ||||||| |||   | | ||| ||||||||||||||||||||||||||||||||| | |||||||    
T  74724 actcctcacctataaatagagccctcattccacacaatttcacacaccaaaagttctcttgagttgtcaaagaacttttctctcttctc 74812  T

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Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 161 - 248
Target Start/End: Original strand, 8606639 - 8606726
Alignment:
Q  161 ctcctcacctataaatagaactttcattcctcacttgtactcaccccaaaagttctcttgagttgtcaaagaacttttatttcttctc 248  Q
    ||||||||||||||||||| |  ||||||| |||   | | ||| ||||||||||||||||||||||||||||||||| | |||||||    
T  8606639 ctcctcacctataaatagagccctcattccacacaatttcacacaccaaaagttctcttgagttgtcaaagaacttttctctcttctc 8606726  T

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Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 161 - 248
Target Start/End: Original strand, 8613100 - 8613187
Alignment:
Q  161 ctcctcacctataaatagaactttcattcctcacttgtactcaccccaaaagttctcttgagttgtcaaagaacttttatttcttctc 248  Q
    ||||||||||||||||||| | |||||||| |||   | | ||| |||||||||||||||||||| |||||||||||| | |||||||    
T  8613100 ctcctcacctataaatagagccttcattccacacaatttcacacaccaaaagttctcttgagttgccaaagaacttttctctcttctc 8613187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 161 - 248
Target Start/End: Complemental strand, 13105225 - 13105138
Alignment:
Q  161 ctcctcacctataaatagaactttcattcctcacttgtactcaccccaaaagttctcttgagttgtcaaagaacttttatttcttctc 248  Q
    ||||||||||||||||||| |  ||||||| |||   | | ||| ||||||||||||||||||||||||||||||||| | |||||||    
T  13105225 ctcctcacctataaatagagccctcattccacacaatttcacacaccaaaagttctcttgagttgtcaaagaacttttctctcttctc 13105138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 161 - 248
Target Start/End: Complemental strand, 13111382 - 13111295
Alignment:
Q  161 ctcctcacctataaatagaactttcattcctcacttgtactcaccccaaaagttctcttgagttgtcaaagaacttttatttcttctc 248  Q
    ||||||||||||||||||| |  ||||||| |||   | | ||| ||||||||||||||||||||||||||||||||| | |||||||    
T  13111382 ctcctcacctataaatagagccatcattccacacaatttcacacaccaaaagttctcttgagttgtcaaagaacttttctctcttctc 13111295  T

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Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 161 - 248
Target Start/End: Complemental strand, 14880897 - 14880810
Alignment:
Q  161 ctcctcacctataaatagaactttcattcctcacttgtactcaccccaaaagttctcttgagttgtcaaagaacttttatttcttctc 248  Q
    ||||||||||||||||||| || ||||||| |||   | | |||  |||||||||||||||||||||||||||||||| | |||||||    
T  14880897 ctcctcacctataaatagagctctcattccacacaatttcacacatcaaaagttctcttgagttgtcaaagaacttttctctcttctc 14880810  T

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Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 161 - 248
Target Start/End: Complemental strand, 14892712 - 14892625
Alignment:
Q  161 ctcctcacctataaatagaactttcattcctcacttgtactcaccccaaaagttctcttgagttgtcaaagaacttttatttcttctc 248  Q
    ||||||||||||||||||| || ||||||| |||   | | |||  |||||||||||||||||||||||||||||||| | |||||||    
T  14892712 ctcctcacctataaatagagctctcattccacacaatttcacacatcaaaagttctcttgagttgtcaaagaacttttctctcttctc 14892625  T

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Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 161 - 248
Target Start/End: Complemental strand, 23287713 - 23287626
Alignment:
Q  161 ctcctcacctataaatagaactttcattcctcacttgtactcaccccaaaagttctcttgagttgtcaaagaacttttatttcttctc 248  Q
    ||||||||||||||||||| |  ||||||| |||   | | ||| ||||||||||||||||||||||||||||||||| | |||||||    
T  23287713 ctcctcacctataaatagagccctcattccacacaatttcacacaccaaaagttctcttgagttgtcaaagaacttttctctcttctc 23287626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 163 - 248
Target Start/End: Original strand, 261838 - 261923
Alignment:
Q  163 cctcacctataaatagaactttcattcctcacttgtactcaccccaaaagttctcttgagttgtcaaagaacttttatttcttctc 248  Q
    ||||||||||||||||| || ||||||| |||   | | ||| ||||||||||||||||||||||||||| ||||| | |||||||    
T  261838 cctcacctataaatagagctctcattccacacaatttcacacaccaaaagttctcttgagttgtcaaagatcttttctctcttctc 261923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 161 - 248
Target Start/End: Complemental strand, 9525001 - 9524914
Alignment:
Q  161 ctcctcacctataaatagaactttcattcctcacttgtactcaccccaaaagttctcttgagttgtcaaagaacttttatttcttctc 248  Q
    ||||||||||||||||||| |  |||||||  ||   | | ||| ||||||||||||||||||||||||||||||||| | |||||||    
T  9525001 ctcctcacctataaatagagccctcattccatacaatttcacacaccaaaagttctcttgagttgtcaaagaacttttctctcttctc 9524914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 161 - 248
Target Start/End: Original strand, 17934551 - 17934638
Alignment:
Q  161 ctcctcacctataaatagaactttcattcctcacttgtactcaccccaaaagttctcttgagttgtcaaagaacttttatttcttctc 248  Q
    ||||||||||||||||||| |  ||||||| |||   |   ||| ||||||||||||||||||||||||||||||||| | |||||||    
T  17934551 ctcctcacctataaatagagccctcattccacacaattttacacaccaaaagttctcttgagttgtcaaagaacttttctctcttctc 17934638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 161 - 248
Target Start/End: Complemental strand, 26386293 - 26386206
Alignment:
Q  161 ctcctcacctataaatagaactttcattcctcacttgtactcaccccaaaagttctcttgagttgtcaaagaacttttatttcttctc 248  Q
    ||||| |||||||||||||||| ||||||| |||   | | ||| |||||| |||||||||||||||||| ||||||| | |||||||    
T  26386293 ctccttacctataaatagaactctcattccacacaatttcacacaccaaaaattctcttgagttgtcaaataacttttctctcttctc 26386206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 56 - 163
Target Start/End: Original strand, 41565890 - 41565997
Alignment:
Q  56 tcatgtcaactttctcaattattgctcatttatgaggtgatgtcaaacaattaattttctaacagtcaaatgatcttagctgtcggatctaaaattcatc 155  Q
    ||||||||||||||| | ||| ||||| ||||||||| ||| | |||| ||||||||| |||| |||||||||| || |  || |||||| ||| ||||     
T  41565890 tcatgtcaactttcttagttactgctcgtttatgaggagatatgaaaccattaattttgtaacggtcaaatgatattggtcgttggatctgaaactcatt 41565989  T
Q  156 tttgactc 163  Q
    ||||||||    
T  41565990 tttgactc 41565997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 206 - 248
Target Start/End: Original strand, 12558374 - 12558416
Alignment:
Q  206 ccaaaagttctcttgagttgtcaaagaacttttatttcttctc 248  Q
    ||||||||||||||||||||||||||||||||| | |||||||    
T  12558374 ccaaaagttctcttgagttgtcaaagaacttttctctcttctc 12558416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 206 - 248
Target Start/End: Complemental strand, 16815392 - 16815350
Alignment:
Q  206 ccaaaagttctcttgagttgtcaaagaacttttatttcttctc 248  Q
    ||||||||||||||||||||||||||||||||| | |||||||    
T  16815392 ccaaaagttctcttgagttgtcaaagaacttttctctcttctc 16815350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 202 - 248
Target Start/End: Original strand, 41007095 - 41007141
Alignment:
Q  202 caccccaaaagttctcttgagttgtcaaagaacttttatttcttctc 248  Q
    ||||| ||||||||||||||||||||||||||||||| | |||||||    
T  41007095 cacccaaaaagttctcttgagttgtcaaagaacttttctctcttctc 41007141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 206 - 248
Target Start/End: Complemental strand, 48060270 - 48060228
Alignment:
Q  206 ccaaaagttctcttgagttgtcaaagaacttttatttcttctc 248  Q
    ||||||||||||||||||||||||||||||||| | |||||||    
T  48060270 ccaaaagttctcttgagttgtcaaagaacttttctctcttctc 48060228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 161 - 238
Target Start/End: Complemental strand, 9554677 - 9554600
Alignment:
Q  161 ctcctcacctataaatagaactttcattcctcacttgtactcaccccaaaagttctcttgagttgtcaaagaactttt 238  Q
    ||||||||||||||||||| |  |||||||  ||   | | ||| |||||||||||||||||||||||||||||||||    
T  9554677 ctcctcacctataaatagagccctcattccatacaatttcacacaccaaaagttctcttgagttgtcaaagaactttt 9554600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 115 - 176
Target Start/End: Original strand, 12156152 - 12156213
Alignment:
Q  115 taacagtcaaatgatcttagctgtcggatctaaaattcatctttgactcctcacctataaat 176  Q
    |||| ||||||||||||||||||| |||| ||||| ||||||||   |||||||||||||||    
T  12156152 taacggtcaaatgatcttagctgttggatttaaaactcatctttagttcctcacctataaat 12156213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 191 - 248
Target Start/End: Original strand, 48435364 - 48435421
Alignment:
Q  191 tcacttgtactcaccccaaaagttctcttgagttgtcaaagaacttttatttcttctc 248  Q
    |||||| ||||||| |||||||||||||| |||||| ||||||||||| | |||||||    
T  48435364 tcacttctactcactccaaaagttctcttaagttgtgaaagaacttttctctcttctc 48435421  T

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Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 208 - 248
Target Start/End: Complemental strand, 8154180 - 8154140
Alignment:
Q  208 aaaagttctcttgagttgtcaaagaacttttatttcttctc 248  Q
    ||||||||||||||||||||||||||||||| | |||||||    
T  8154180 aaaagttctcttgagttgtcaaagaacttttctctcttctc 8154140  T

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Target: chr3; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 248
Target Start/End: Original strand, 11181248 - 11181333
Alignment:
Q  161 ctcctcacctataaatagaactttcattcctcacttgtactcaccccaaaagttctcttgagttgtcaaagaacttttatttcttctc 248  Q
    ||||||||||||||||||| || ||||||| |||   | | ||| ||||||||||||  ||||||||||||||||||| | |||||||    
T  11181248 ctcctcacctataaatagagctctcattccacacaatttcacacaccaaaagttctc--gagttgtcaaagaacttttctctcttctc 11181333  T

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Target: chr3; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 148 - 248
Target Start/End: Complemental strand, 16983622 - 16983522
Alignment:
Q  148 aattcatctttgactcctcacctataaatagaactttcattcctcacttgtactcaccccaaaagttctcttgagttgtcaaagaacttttatttcttct 247  Q
    |||||||||||| ||  |||||||||| |||| ||    | |||||||| || || ||||||||||||||||||||||||||| || |||| | ||||||    
T  16983622 aattcatctttggcttttcacctataagtagagctcctctccctcacttctattctccccaaaagttctcttgagttgtcaaataatttttctctcttct 16983523  T
Q  248 c 248  Q
    |    
T  16983522 c 16983522  T

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Target: chr3; HSP #29
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 208 - 248
Target Start/End: Original strand, 41015880 - 41015920
Alignment:
Q  208 aaaagttctcttgagttgtcaaagaacttttatttcttctc 248  Q
    ||||||||||||||||||||||||||||||| | |||||||    
T  41015880 aaaagttctcttgagttgtcaaagaacttttctctcttctc 41015920  T

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Target: chr3; HSP #30
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 161 - 248
Target Start/End: Complemental strand, 4313177 - 4313090
Alignment:
Q  161 ctcctcacctataaatagaactttcattcctcacttgtactcaccccaaaagttctcttgagttgtcaaagaacttttatttcttctc 248  Q
    ||||||||||||||||||| |  ||||||| |||   |   ||| ||||||||||| ||||||||||||||||||||| | |||||||    
T  4313177 ctcctcacctataaatagagccctcattccacacaattttacacaccaaaagttctattgagttgtcaaagaacttttctctcttctc 4313090  T

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Target: chr3; HSP #31
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 161 - 248
Target Start/End: Original strand, 37468505 - 37468592
Alignment:
Q  161 ctcctcacctataaatagaactttcattcctcacttgtactcaccccaaaagttctcttgagttgtcaaagaacttttatttcttctc 248  Q
    |||||||||||||||||||    ||||||| |||   | | ||| |||||||||||||||| |||||||||||||||| | |||||||    
T  37468505 ctcctcacctataaatagagtcatcattccacacaatttcacacaccaaaagttctcttgaattgtcaaagaacttttctctcttctc 37468592  T

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Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 248
Target Start/End: Complemental strand, 16030856 - 16030814
Alignment:
Q  206 ccaaaagttctcttgagttgtcaaagaacttttatttcttctc 248  Q
    |||||||||| |||||||||||||||||||||| | |||||||    
T  16030856 ccaaaagttcacttgagttgtcaaagaacttttctctcttctc 16030814  T

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Target: scaffold0119 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 161 - 248
Target Start/End: Complemental strand, 39798 - 39711
Alignment:
Q  161 ctcctcacctataaatagaactttcattcctcacttgtactcaccccaaaagttctcttgagttgtcaaagaacttttatttcttctc 248  Q
    ||||||||||||||||||| |  |||||||||||   | | ||| ||||||||||||||||||||||||||||||||| | |||||||    
T  39798 ctcctcacctataaatagagccctcattcctcacaatttcacacaccaaaagttctcttgagttgtcaaagaacttttctctcttctc 39711  T

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Target: scaffold0046 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0046
Description:

Target: scaffold0046; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 161 - 237
Target Start/End: Complemental strand, 86277 - 86201
Alignment:
Q  161 ctcctcacctataaatagaactttcattcctcacttgtactcaccccaaaagttctcttgagttgtcaaagaacttt 237  Q
    ||||||||||||||||||| || ||||||| |||   | | ||| ||||||||||||||||||||||||||||||||    
T  86277 ctcctcacctataaatagagctctcattccacacaatttcacacaccaaaagttctcttgagttgtcaaagaacttt 86201  T

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Target: scaffold0039 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 161 - 248
Target Start/End: Complemental strand, 89453 - 89366
Alignment:
Q  161 ctcctcacctataaatagaactttcattcctcacttgtactcaccccaaaagttctcttgagttgtcaaagaacttttatttcttctc 248  Q
    ||||||||||||||||||| |  ||||||| |||   | | ||| ||||||||||||||||||||||||||||||||| | |||||||    
T  89453 ctcctcacctataaatagagccctcattccacacaatttcacacaccaaaagttctcttgagttgtcaaagaacttttctctcttctc 89366  T

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Target: scaffold0031 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 161 - 248
Target Start/End: Complemental strand, 33306 - 33219
Alignment:
Q  161 ctcctcacctataaatagaactttcattcctcacttgtactcaccccaaaagttctcttgagttgtcaaagaacttttatttcttctc 248  Q
    ||||||||||||||||||| |  ||||||| |||   | | ||| ||||||||||||||||||||||||||||||||| | |||||||    
T  33306 ctcctcacctataaatagagccctcattccacacaatttcacacaccaaaagttctcttgagttgtcaaagaacttttctctcttctc 33219  T

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Target: scaffold0027 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 161 - 248
Target Start/End: Original strand, 24069 - 24156
Alignment:
Q  161 ctcctcacctataaatagaactttcattcctcacttgtactcaccccaaaagttctcttgagttgtcaaagaacttttatttcttctc 248  Q
    ||||||||||||||||||| |  ||||||| |||   | | ||| ||||||||||||||||||||||||||||||||| | |||||||    
T  24069 ctcctcacctataaatagagccctcattccacacaatttcacacaccaaaagttctcttgagttgtcaaagaacttttctctcttctc 24156  T

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Target: scaffold0009 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 169 - 248
Target Start/End: Original strand, 163843 - 163922
Alignment:
Q  169 ctataaatagaactttcattcctcacttgtactcaccccaaaagttctcttgagttgtcaaagaacttttatttcttctc 248  Q
    ||||||||||| || ||||||||||||| |||  || |||||||||||||| |||||||||| ||||||| | |||||||    
T  163843 ctataaatagagctctcattcctcacttatacaaacaccaaaagttctcttaagttgtcaaaaaacttttctctcttctc 163922  T

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Target: scaffold0226 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0226
Description:

Target: scaffold0226; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 167 - 248
Target Start/End: Original strand, 5716 - 5797
Alignment:
Q  167 acctataaatagaactttcattcctcacttgtactcaccccaaaagttctcttgagttgtcaaagaacttttatttcttctc 248  Q
    ||||||||||| |  | ||||||||||||| ||| ||| | ||||||| ||||||||||||||||||||||| | |||||||    
T  5716 acctataaataaagttctcattcctcacttatacacacacaaaaagttttcttgagttgtcaaagaacttttctctcttctc 5797  T

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Target: scaffold0096 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 161 - 238
Target Start/End: Complemental strand, 966 - 889
Alignment:
Q  161 ctcctcacctataaatagaactttcattcctcacttgtactcaccccaaaagttctcttgagttgtcaaagaactttt 238  Q
    ||||||||||||||||||| |  ||||||| |||   | | ||| |||||||||||||||||||||||||||||||||    
T  966 ctcctcacctataaatagagccctcattccacacaatttcacacaccaaaagttctcttgagttgtcaaagaactttt 889  T

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Target: scaffold0018 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 191 - 248
Target Start/End: Original strand, 171192 - 171249
Alignment:
Q  191 tcacttgtactcaccccaaaagttctcttgagttgtcaaagaacttttatttcttctc 248  Q
    |||||| |||||| |||||||||| ||||||||||||||||||||||| | |||||||    
T  171192 tcacttctactcatcccaaaagttatcttgagttgtcaaagaacttttctctcttctc 171249  T

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Target: scaffold1699 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold1699
Description:

Target: scaffold1699; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 208 - 248
Target Start/End: Complemental strand, 927 - 887
Alignment:
Q  208 aaaagttctcttgagttgtcaaagaacttttatttcttctc 248  Q
    ||||||||||||||||||||||||||||||| |||||||||    
T  927 aaaagttctcttgagttgtcaaagaacttttctttcttctc 887  T

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Target: scaffold0085 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 206 - 248
Target Start/End: Complemental strand, 18285 - 18243
Alignment:
Q  206 ccaaaagttctcttgagttgtcaaagaacttttatttcttctc 248  Q
    ||||||||||||||||||||||||||||||||| | |||||||    
T  18285 ccaaaagttctcttgagttgtcaaagaacttttctctcttctc 18243  T

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Target: scaffold0306 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0306
Description:

Target: scaffold0306; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 208 - 248
Target Start/End: Original strand, 16178 - 16218
Alignment:
Q  208 aaaagttctcttgagttgtcaaagaacttttatttcttctc 248  Q
    ||||||||||||||||||||||||||||||| | |||||||    
T  16178 aaaagttctcttgagttgtcaaagaacttttctctcttctc 16218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0301 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0301
Description:

Target: scaffold0301; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 208 - 248
Target Start/End: Original strand, 9433 - 9473
Alignment:
Q  208 aaaagttctcttgagttgtcaaagaacttttatttcttctc 248  Q
    ||||||||||||||||||||||||||||||| | |||||||    
T  9433 aaaagttctcttgagttgtcaaagaacttttctctcttctc 9473  T

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Target: scaffold0065 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 208 - 248
Target Start/End: Complemental strand, 43777 - 43737
Alignment:
Q  208 aaaagttctcttgagttgtcaaagaacttttatttcttctc 248  Q
    ||||||||||||||||||||||||||||||| | |||||||    
T  43777 aaaagttctcttgagttgtcaaagaacttttctctcttctc 43737  T

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Target: scaffold0028 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 206 - 237
Target Start/End: Original strand, 66336 - 66367
Alignment:
Q  206 ccaaaagttctcttgagttgtcaaagaacttt 237  Q
    ||||||||||||||||||||||||||||||||    
T  66336 ccaaaagttctcttgagttgtcaaagaacttt 66367  T

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Target: scaffold0016 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 161 - 248
Target Start/End: Original strand, 14584 - 14671
Alignment:
Q  161 ctcctcacctataaatagaactttcattcctcacttgtactcaccccaaaagttctcttgagttgtcaaagaacttttatttcttctc 248  Q
    ||||||||||||||||||| |  ||||||| |||   | |  || ||||||||||| ||||||||||||||||||||| | |||||||    
T  14584 ctcctcacctataaatagagccctcattccacacaatttcagacaccaaaagttctattgagttgtcaaagaacttttctctcttctc 14671  T

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Target: scaffold0043 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 248
Target Start/End: Complemental strand, 32809 - 32723
Alignment:
Q  162 tcctcacctataaatagaactttcattcctcacttgtactcaccccaaaagttctcttgagttgtcaaagaacttttatttcttctc 248  Q
    |||||||||||||||||| |  ||||||| |||   | | ||| ||||||||||| ||||||| ||||||||||||| | |||||||    
T  32809 tcctcacctataaatagagccctcattccacacaatttcacacaccaaaagttcttttgagttatcaaagaacttttctctcttctc 32723  T

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Target: scaffold0351 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0351
Description:

Target: scaffold0351; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 208 - 248
Target Start/End: Complemental strand, 7148 - 7108
Alignment:
Q  208 aaaagttctcttgagttgtcaaagaacttttatttcttctc 248  Q
    |||||||||||||||||||||||| |||||| | |||||||    
T  7148 aaaagttctcttgagttgtcaaagcacttttctctcttctc 7108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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