View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6921_low_14 (Length: 250)
Name: NF6921_low_14
Description: NF6921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6921_low_14 |
 | |
|
| [»] scaffold0015 (1 HSPs) |
| |
|
Alignment Details
Target: scaffold0015 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: scaffold0015
Description:
Target: scaffold0015; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 12 - 250
Target Start/End: Complemental strand, 177891 - 177653
Alignment:
| Q |
12 |
catcactacaaaatccgccgggaatacaaatttatcaactttaacaagcacatcttcggctattcccaatggtgttgcaaatgatttatcggccaactgc |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
177891 |
catcactacaaaatccgccgggaatacaaatttatcaactttaacaagcacatcttcggctattcccaatggtgttgcaaatgatttatcggccaattgc |
177792 |
T |
|
| Q |
112 |
aaggtcatcctagtccgcttgatacataaatcaccaactcttttggcgacggacaaaggcatgagatttatgcttgaaccaaggtcaagtagtgccttac |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
177791 |
aaggtcatcctagtccgcttgatacataaatcaccaactcttttggcgacggacaaaggcatgagatttatgcttgaaccaaggtcaagtagtgccttac |
177692 |
T |
|
| Q |
212 |
caacattgatagtgcctatagctaccggtagagtgactc |
250 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
177691 |
caacattgatagtgcctatagctaccggtagagtgactc |
177653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 106; Significance: 4e-53; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 12 - 249
Target Start/End: Complemental strand, 20171512 - 20171275
Alignment:
| Q |
12 |
catcactacaaaatccgccgggaatacaaatttatcaactttaacaagcacatcttcggctattcccaatggtgttgcaaatgatttatcggccaactgc |
111 |
Q |
| |
|
|||||| ||||||||| ||| || | ||||||||||||||| || |||||||| || ||||||||||||||| ||| | |||||||||||||| ||| |
|
|
| T |
20171512 |
catcaccacaaaatccaccgaaaagaaaaatttatcaactttcactagcacatcctccgctattcccaatggttttgtgtaggatttatcggccaattgc |
20171413 |
T |
|
| Q |
112 |
aaggtcatcctagtccgcttgatacataaatcaccaactcttttggcgacggacaaaggcatgagatttatgcttgaaccaaggtcaagtagtgccttac |
211 |
Q |
| |
|
|| ||||||||||||||||| ||||| || ||||||||||||||||| || |||||||||||||| || |||||||| ||||| |||||||||| || | |
|
|
| T |
20171412 |
aaagtcatcctagtccgcttaatacacaagtcaccaactcttttggcaacagacaaaggcatgaggttgatgcttgagccaagatcaagtagtgatttgc |
20171313 |
T |
|
| Q |
212 |
caacattgatagtgcctatagctaccggtagagtgact |
249 |
Q |
| |
|
|||||| |||||||||||||||||| ||| ||||||| |
|
|
| T |
20171312 |
caacatgaatagtgcctatagctaccagtaaagtgact |
20171275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University