View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6921_low_2 (Length: 872)
Name: NF6921_low_2
Description: NF6921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6921_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 728; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 728; E-Value: 0
Query Start/End: Original strand, 17 - 856
Target Start/End: Original strand, 45201041 - 45201873
Alignment:
| Q |
17 |
atcaagagaattggcaatcaggagcannnnnnnnnctttagaaaaactaacatgattcttgtaataacattaaatttctctgtatgtaggtgttagctga |
116 |
Q |
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|||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45201041 |
atcaagagaattggcaatcaggagcatttttttttctttagaaaaacttccatgattcttgtaataacattaaatttctctgtatgtaggtgttagctga |
45201140 |
T |
|
| Q |
117 |
tagtttgggcatcccttgtcgcttggtgaaaggaatacaatatacaggttctgatgatgtggcaatgaactttgtcaagattgacgagggaaggtaagtt |
216 |
Q |
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||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45201141 |
tagtttgggcatcccttgtcggttggtgaaaggaatgcaatatacaggttctgatgatgtggcaatgaactttgtcaagattgacgagggaaggtaagtt |
45201240 |
T |
|
| Q |
217 |
tgttaaattt-tattttggcggtataggcaagtaggcataactaatttatatacatttaccgaagcaaaaaatttatgcacatatcaatagctttacctg |
315 |
Q |
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| T |
45201241 |
tgttaaatttgtattttggcggtatagg--------cataactattttatatacatttaccgaagcaaaaaatttatgcacatatcaatagctttacctg |
45201332 |
T |
|
| Q |
316 |
ttattatgtatatatcagttatgatttatctgaatttcagggagtacattgttgacctcatggcagctcctggaactcttattccatctgatgcagctgg |
415 |
Q |
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| T |
45201333 |
ttattatgtatatatcagttatgatttatctgaatttcagggagtacattgttgacctcatggcagctcctggaactcttattccatctgatgcagctgg |
45201432 |
T |
|
| Q |
416 |
gtcacatattgagtatgatgattcttcttttgtagcgagtccctcatcaagagatcttgattcatctcacattacatcgttcagcagcggggttggaagt |
515 |
Q |
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| T |
45201433 |
gtcacatattgagtatgatgattcttcttttgtagcgagtccctcatcaagagatcttgattcatctcacattacatcgttcagcagcggggttggaagt |
45201532 |
T |
|
| Q |
516 |
tcatctgaagaaacttcagactttaggacttttgaaaaaggaaacaggtataaacattttgccgatgcagggaaggaatctgatgtaagcagcaggcccc |
615 |
Q |
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| T |
45201533 |
tcatctgaagaaacttcagactttaggacttttgaaaaaggaaacaggtataaacattttgccgatgcagggaaggaatctgatgtaagcagcaggcccc |
45201632 |
T |
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| Q |
616 |
ctactcgcaaagaagaattnnnnnnnccgttaaatgaattcaaaaatatccctaatgtagaaaagattaaggcgagggaatctgttagcagacctaataa |
715 |
Q |
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| T |
45201633 |
ctacttgcaaagaagaattaaaaaaaccgttaaatgaattcaaaaatatccctaacgtagaaaagattaaggcgagggaatctgttagcagacctaataa |
45201732 |
T |
|
| Q |
716 |
ttatccatacatgcatggaagatctccttcttggacagaagggatcagttccccagaagcccatagaatgaaagtcaaagatgtttcccaatatatgatt |
815 |
Q |
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| T |
45201733 |
ttatccatacatgcatggaagatctccttcttggacagaagggatcagttccccagaagcccatagaatgaaagtcaaagatgtttcccaatatatgatt |
45201832 |
T |
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| Q |
816 |
gatgttaccaaggagaaccctaagttggctcaaaagcttca |
856 |
Q |
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| T |
45201833 |
gatgttaccaaggagaaccctaagttggctcaaaagcttca |
45201873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 80; Significance: 5e-37; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 80; E-Value: 5e-37
Query Start/End: Original strand, 348 - 535
Target Start/End: Original strand, 30003456 - 30003643
Alignment:
| Q |
348 |
aatttcagggagtacattgttgacctcatggcagctcctggaactcttattccatctgatgcagctgggtcacatattgagtatgatgattcttcttttg |
447 |
Q |
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|||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| |||| |||||||| |||||||| || || | |||| |
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| T |
30003456 |
aatttcagggagtacattgttgaccttatggcagatcctggaactcttattccatctgatgctactggatcacatatcgagtatgacgagtcctttttta |
30003555 |
T |
|
| Q |
448 |
tagcgagtccctcatcaagagatcttgattcatctcacattacatcgttcagcagcggggttggaagttcatctgaagaaacttcaga |
535 |
Q |
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| T |
30003556 |
tggcaagtccttcatcaagagacctcgattcgtctcgtgttgcatcatctagcagtggtgttggaagttcatcggaagaaacttcaga |
30003643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 139 - 213
Target Start/End: Original strand, 30003053 - 30003127
Alignment:
| Q |
139 |
ttggtgaaaggaatacaatatacaggttctgatgatgtggcaatgaactttgtcaagattgacgagggaaggtaa |
213 |
Q |
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||||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||| |||| ||||||||| |
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| T |
30003053 |
ttggtgaaaggaaagcaatatacaggttctgatgacgtggcaataaactttgtcaagattaacgacggaaggtaa |
30003127 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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