View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6921_low_3 (Length: 672)
Name: NF6921_low_3
Description: NF6921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6921_low_3 |
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| [»] scaffold0015 (2 HSPs) |
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Alignment Details
Target: scaffold0015 (Bit Score: 280; Significance: 1e-156; HSPs: 2)
Name: scaffold0015
Description:
Target: scaffold0015; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 359 - 650
Target Start/End: Original strand, 177385 - 177676
Alignment:
| Q |
359 |
gtgttgaatcaacacttaccttacccacatgctccatcaaagaaggataaagaaaggcaatacgcaaggtttcttgagctcttcaagaaattgcaaattg |
458 |
Q |
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| T |
177385 |
gtgttgaatcaacacttaccttacccacatgctccatcaaagaaggataaagaaaagcaatacgcaaggtttcttgagctcttcaagaaattgcaaattg |
177484 |
T |
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| Q |
459 |
acattccattctcggaagccttggagcaaatgccggcgtatgctaagttcatgaaagacatgctttccaagaagaggaaaattcatgatgaagaaaccat |
558 |
Q |
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| T |
177485 |
acattccattctcggaagccttggagcaaatgccggcgtatgctaagttcatgaaagacatgctttccaagaagaggagaattcatgatgaagaaaccat |
177584 |
T |
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| Q |
559 |
ccaacttgatgctaattgtagtgctatcgtccaacggaggttgccgaagaaagaacaagatccgggaagagtcactctaccggtagctatag |
650 |
Q |
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| T |
177585 |
ccaacttgatgctaattgtagtgctatcatccaacggaggttgccgaagaaagaacaagatccgggaagagtcactctaccggtagctatag |
177676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0015; HSP #2
Raw Score: 245; E-Value: 1e-135
Query Start/End: Original strand, 13 - 261
Target Start/End: Original strand, 177039 - 177287
Alignment:
| Q |
13 |
catcaaaaaccttgaaacacaagtgggtcaaatggctcaacacatgtctcaagccaaccaacaaggaggagcgttcaccgccaacactcaagacaaccca |
112 |
Q |
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| T |
177039 |
catcaaaaaccttgaaacacaagtgggtcaaatggctcaacacatgtctcaagccaaccaacaaggaggagcgttcaccgccaacactcaagacaaccca |
177138 |
T |
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| Q |
113 |
aaagggaaagagcattgcaaagccataacaacaaggagtggtaaggtaattagtacgggtgtaggaggtgacattgaagtggagcggagggttgttgaag |
212 |
Q |
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| T |
177139 |
aaagggaaagagcattgcaaagccataacaacaaggagtggtaaggtaattagtacgggtgtaggaggtgacattgaagtggagcggagggttgttgaag |
177238 |
T |
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| Q |
213 |
agtttggtctcgaggaggatgatgttgaagtaggtagtgagaaggagct |
261 |
Q |
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| T |
177239 |
agtttgatctcgaggaggatgatgttgaagtaggtagtgagaaggagct |
177287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 172; Significance: 4e-92; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 172; E-Value: 4e-92
Query Start/End: Original strand, 359 - 650
Target Start/End: Original strand, 20171006 - 20171297
Alignment:
| Q |
359 |
gtgttgaatcaacacttaccttacccacatgctccatcaaagaaggataaagaaaggcaatacgcaaggtttcttgagctcttcaagaaattgcaaattg |
458 |
Q |
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| T |
20171006 |
gtgttgactcaacactttccctatccacatgctccatcaaagaaagaaaaagaaaggcaatacgcaaggtttcttgaactcttcaagaagttacaaattg |
20171105 |
T |
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| Q |
459 |
acattccattctcggaagccttggagcaaatgccggcgtatgctaagttcatgaaagacatgctttccaagaagaggaaaattcatgatgaagaaaccat |
558 |
Q |
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| T |
20171106 |
acattccattttcggaagccttggagcaaatgtcgtcttatgccaaattcatgaaagacattctttacaagaagaggataattaatgatgaagaaatcat |
20171205 |
T |
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| Q |
559 |
ccaacttgatgctaattgtagtgctatcgtccaacggaggttgccgaagaaagaacaagatccgggaagagtcactctaccggtagctatag |
650 |
Q |
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| T |
20171206 |
ccaactcgatgcaaattgtagtgccatcattcaacgaaggttgcccaagaaagaacaagatccgggaaaagtcactttactggtagctatag |
20171297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 23 - 258
Target Start/End: Original strand, 20170643 - 20170872
Alignment:
| Q |
23 |
cttgaaacacaagtgggtcaaatggctcaacacatgtctcaagccaaccaacaaggaggagcgttcaccgccaacactcaagacaacccaaaagggaaag |
122 |
Q |
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| T |
20170643 |
cttgagacacaaatgggtcaaatggatcaacaattagctcaagtcacccaacaaggaggagcgttcaccaccaacacacaagccaattcaaaag------ |
20170736 |
T |
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| Q |
123 |
agcattgcaaagccataacaacaaggagtggtaaggtaattagtacgggtgtaggaggtgacattgaagtggagcggagggttgttgaagagtttggtct |
222 |
Q |
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| T |
20170737 |
aacagtgcaaagccataacaacaaggagtggtaaggtaattggtaaaggtgtaggcgatgacattgaagtggagcagaaggttgttgaagactttgatat |
20170836 |
T |
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| Q |
223 |
cgaggaggatgatgttgaagtaggtagtgagaagga |
258 |
Q |
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| T |
20170837 |
cgataaggatggtgatgaggtaggtagtgagaagga |
20170872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 367 - 591
Target Start/End: Original strand, 26130847 - 26131070
Alignment:
| Q |
367 |
tcaacacttaccttacccacatgctccatcaaagaaggataaagaaaggcaatacgcaaggtttcttgagctcttcaagaaattgcaaattgacattcca |
466 |
Q |
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| T |
26130847 |
tcaacacttgccatatccacatgctccaaccaagaaagc-aaagagcggaaatatgcaaggttccttgatattttcaagagattgaaaatcaatattcca |
26130945 |
T |
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| Q |
467 |
ttctcggaagccttggagcaaatgccggcgtatgctaagttcatgaaagacatgctttccaagaagaggaaaattcatgatgaagaaaccatccaacttg |
566 |
Q |
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| T |
26130946 |
ttctcggaagccttggagaaaattctgacgtatgcttagttctggaaggaaatcctttataagaagaggaagtacaatgataaagtaacaattcaactta |
26131045 |
T |
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| Q |
567 |
atgctaattgtagtgctatcgtcca |
591 |
Q |
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| T |
26131046 |
atgcaaattgtagtgcaatcatcca |
26131070 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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