View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6921_low_5 (Length: 449)
Name: NF6921_low_5
Description: NF6921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6921_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 408; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 1 - 438
Target Start/End: Complemental strand, 10295231 - 10294790
Alignment:
| Q |
1 |
tcgtagagtgaaacaattctgatggccactcaaagcgaagaagcattccgttcttcaatccagcaagaacataatacttaccaacaaatacaaggcgtac |
100 |
Q |
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| T |
10295231 |
tcgtagagtgaaacaattctgatggccactcaaagcgaagaagcattccgttcttcaatccagcaagaacataatacttaccaacaaatacaaggtgtac |
10295132 |
T |
|
| Q |
101 |
atcttgaggtatacaaattgcatt---taatgaaattgtcgcatgagcaataattataacttctccatctggagcaaaagaccaaacttccacagaaggc |
197 |
Q |
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| T |
10295131 |
atcttgaggtatacaaattgcattatttaatgaaattgtcgcatgagcaataattataacttctccatctggagcaaaagaccaaagttccacagaaggc |
10295032 |
T |
|
| Q |
198 |
ctatgtgtgccaataacaaagct-ttattttctaaaatagatgaatttgactgtttttctcctatattttgtctggcgatggaaatgcatgatatttcat |
296 |
Q |
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| T |
10295031 |
ctatgtgtgccaataacaaagctattattttctaaaatagatgaatttgactgtttttctcctatattttgtctggcgatggaaatgcatgatatttcat |
10294932 |
T |
|
| Q |
297 |
tctgaaatttcgaatgtttcatttcaaatacttcatattcataagctgatagatatgtaaccccgaggataaacaaagagcacgggttagtggttgacac |
396 |
Q |
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| T |
10294931 |
tctgaaatttcaaatgtttcatttcaaatacttcatattcataagctgatagatatgtaaccccgaggataaacaaagagcacgggttagtggttgacac |
10294832 |
T |
|
| Q |
397 |
aactatgaaattatgcccaactgcccccaaactgatattcat |
438 |
Q |
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| T |
10294831 |
aactatgaaattatgcccaactgcccccaaactgatattcat |
10294790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 70; Significance: 2e-31; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 221 - 437
Target Start/End: Original strand, 43798270 - 43798486
Alignment:
| Q |
221 |
ttattttctaaaatagatgaatttgactgtttttctcctatattttgt-ctggcgatggaaatgcatgatatttcattctgaaatttcgaatgtttcatt |
319 |
Q |
| |
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||||||||| |||| |||||||||||| |||||| ||| || ||||| || | ||||||||||||||||| ||| ||||| | || | |||||| |||| |
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| T |
43798270 |
ttattttctgaaatggatgaatttgaccgtttttttccg-tactttgttctagggatggaaatgcatgatacttcgttctgcagttccaaatgttgcatt |
43798368 |
T |
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| Q |
320 |
tcaaatacttcatattcataagctgatagatatgtaaccccgaggataaacaaagagcacgggttagtggttgacacaactatgaaattatgcccaactg |
419 |
Q |
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| T |
43798369 |
tcataaatttcatattgataagccgatagcattctaaccccaaggataaacaaaaaacatgggttggaggttgacacaacgatgaaattatgcccaactg |
43798468 |
T |
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| Q |
420 |
cccccaaactgatattca |
437 |
Q |
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| T |
43798469 |
cccccagactaatattca |
43798486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 23 - 117
Target Start/End: Original strand, 43798008 - 43798102
Alignment:
| Q |
23 |
tggccactcaaagcgaagaagcattccgttcttcaatccagcaagaacataatacttaccaacaaatacaaggcgtacatcttgaggtatacaaa |
117 |
Q |
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| T |
43798008 |
tggccactcaaagcgaaggagcattccattccgcaatccggcaagaacataatatttatcaacaaacacgagtcgtacatcttgaggtatgcaaa |
43798102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 172 - 217
Target Start/End: Original strand, 43798178 - 43798223
Alignment:
| Q |
172 |
caaaagaccaaacttccacagaaggcctatgtgtgccaataacaaa |
217 |
Q |
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| T |
43798178 |
caaaagaccaaatctctacagaaggcctatgggtgccaataacaaa |
43798223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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