View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6921_low_7 (Length: 373)
Name: NF6921_low_7
Description: NF6921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6921_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 13 - 343
Target Start/End: Complemental strand, 8089159 - 8088840
Alignment:
| Q |
13 |
aatatcaaaacacatgagttgtgagaacacaatcatcggatgcatgtgtaaaatattgtacacctaccacagagcatattaattaaactctcatgaaaaa |
112 |
Q |
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| T |
8089159 |
aatatcaaaacacatgagttgtgacaacacaatcaacggatgcatgtgtaaaatattgtacacctacgacagagcatattaattaaactctcatgaaaaa |
8089060 |
T |
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| Q |
113 |
cacttacactataagctgcaaattaagttgatttatcaaacaaggcaacacaaaacataaatataacagagttatgatttaagagatacctcgcaaatca |
212 |
Q |
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| T |
8089059 |
cacttacgctataagctgcaaattaagttg-tttatcaaacaaggca----------taaatataacagagttatgatttaagagatacctcgcaaatca |
8088971 |
T |
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| Q |
213 |
agctcaatcacaaaaggttgctcattaagttcaacaaaaacacgtttagcacgtaaacaatacctacaagaataaaattaaacccgaattattattattg |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8088970 |
agctcaatcacaaaaggttgctcattaagttcaacaaaaacacgtttagcacgtaaacaatacctacaagaataaaattaaacccgaattattattattg |
8088871 |
T |
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| Q |
313 |
aaacgcgtgataataattgaaaattgaagag |
343 |
Q |
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| T |
8088870 |
aaacgcgtgataataattgaaaattgaagag |
8088840 |
T |
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