View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6922_high_11 (Length: 300)
Name: NF6922_high_11
Description: NF6922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6922_high_11 |
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Alignment Details
Target: chr4 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 13 - 268
Target Start/End: Original strand, 1158518 - 1158770
Alignment:
| Q |
13 |
aatattgtgtataattcaaaatctgggagctttttcttgacgtatattaacaacattttcaaacagaatattttatattctttgacctcattttcattaa |
112 |
Q |
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| T |
1158518 |
aatattgtgtataattcaaaatctgggagctttatcttgacgtatattaacaacattttcaaacagaatattttatattctttgacctcattttcattaa |
1158617 |
T |
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| Q |
113 |
cttgtggacaatgccgccattaacatttcattaacttgttttgcaaattattgtagtaggagtacatcaaaactgtgaactcatgtaagttaccaccctt |
212 |
Q |
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| T |
1158618 |
cttgtggacaatgcc---attaacatttcattaacttgttttgcaaattattgtagtaggagtacatcaaaactgtgaactcatgtaagttaccaccctt |
1158714 |
T |
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| Q |
213 |
cttctgattttctttgaataacaaatccttgttttgtaccacatatgaggtacctt |
268 |
Q |
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| T |
1158715 |
cttctgattttctttgaataacaaatccttgttttgtaccacatatgaggtacctt |
1158770 |
T |
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