View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6922_high_19 (Length: 233)
Name: NF6922_high_19
Description: NF6922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6922_high_19 |
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Alignment Details
Target: chr8 (Bit Score: 203; Significance: 1e-111; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 11157064 - 11156850
Alignment:
| Q |
1 |
aagaaccctaataaagcatatgaaaaaaccctaataaatatgagaagagaagaagaagtttggaacctggattgaggaggagttgttggaggcaaagggg |
100 |
Q |
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| T |
11157064 |
aagaaccctaataaagcatatgaaaaaaccctaataaatatgagaagagaagaagaagtttggaacctggattgaggaggagttgttggaggcaaagggg |
11156965 |
T |
|
| Q |
101 |
atcacatcccatggagattggttaagttgacaaacatgggtttgaaaaatttcaactgcaaatgaaccattttgtagaagtgaaggggaacaagtgaata |
200 |
Q |
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| T |
11156964 |
atcacatcccatggagattggttaagttgacaaacatgggtttgaaaaatttcaactggaaatgaaccattttgtaaaagtgaaggtgaacaagtgaata |
11156865 |
T |
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| Q |
201 |
gaagaggggaaagct |
215 |
Q |
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| T |
11156864 |
gaagaggggaaagct |
11156850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 11164025 - 11163810
Alignment:
| Q |
1 |
aagaaccctaataaagcatatgaaaaaaccctaataaatatgagaagagaagaagaagtttggaacctgg---attgaggaggagttgttggaggcaaag |
97 |
Q |
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| T |
11164025 |
aagaaccctaataaagcatatgaaaaaaccctaatagatataagaagagaagaagaagtttgtaacctggtgaatcgaggaggagctgttggagacaaag |
11163926 |
T |
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| Q |
98 |
gggatcacatcccatggagattggttaagttgacaaacatgggtttgaaaaatttcaactgcaaatgaaccattttgtagaagtgaaggggaacaagtga |
197 |
Q |
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| T |
11163925 |
gggatcacatcccatggagattggttaagctgacaaatgtgtgtttgaagattttgaggtgaaaatgaaccattttgtagcaatgaagatgaacaagtga |
11163826 |
T |
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| Q |
198 |
atagaagaggggaaag |
213 |
Q |
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| T |
11163825 |
atagaagaggggaaag |
11163810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 99 - 173
Target Start/End: Complemental strand, 11176746 - 11176672
Alignment:
| Q |
99 |
ggatcacatcccatggagattggttaagttgacaaacatgggtttgaaaaatttcaactgcaaatgaaccatttt |
173 |
Q |
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|||| ||||||||||||||||||||||| |||||||| || | ||||||| |||||| || |||||||||||||| |
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| T |
11176746 |
ggataacatcccatggagattggttaaggtgacaaacgtgcgcttgaaaagtttcaattggaaatgaaccatttt |
11176672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 94 - 212
Target Start/End: Original strand, 4703888 - 4704006
Alignment:
| Q |
94 |
aaaggggatcacatcccatggagattggttaagttgacaaacatgggtttgaaaaatttcaactgcaaatgaaccattttgtagaagtgaaggggaacaa |
193 |
Q |
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||||||||| |||||||||||||||||||||| |||||||| || |||||||| |||||| | |||||| |||||||||| ||||||| |||||| |
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| T |
4703888 |
aaaggggatggcatcccatggagattggttaagctgacaaacgtgcatttgaaaaggttcaaccggtaatgaatcattttgtagtagtgaagacgaacaa |
4703987 |
T |
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| Q |
194 |
gtgaatagaagaggggaaa |
212 |
Q |
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| T |
4703988 |
gtgaatagaagaggggaaa |
4704006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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