View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6922_high_2 (Length: 444)
Name: NF6922_high_2
Description: NF6922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6922_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 298; Significance: 1e-167; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 77 - 418
Target Start/End: Original strand, 13302988 - 13303329
Alignment:
| Q |
77 |
cttccttcttctgattgataagttgttgagttagaagacataagtaaatgactgatttgatacttgagctctttgttaggagtaaacaaaccataatgtc |
176 |
Q |
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||||||||||||| ||| ||||||||||||||||||||||||||| |||||||||||||||||||| | ||| ||||||||||||||||| ||||||| |
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| T |
13302988 |
cttccttcttctggttggggagttgttgagttagaagacataagtaattgactgatttgatacttgagttgtttattaggagtaaacaaaccgtaatgtc |
13303087 |
T |
|
| Q |
177 |
tctctgtttcagcaggtcctttttgattttcatcgaacatggcaaataaataagtttctaatgcttgattaggtctactaatagtcccattagaaacatg |
276 |
Q |
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||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13303088 |
tctctatttcagcaggtccttttttattttcatcgaacatggcaaataaataagtttctaatgcttgattaggtctactaatagtcccattagaaacatg |
13303187 |
T |
|
| Q |
277 |
cttaattaaattctcatagtagatttgtgcattttcaactgatgcagcaacatcaccatgagaaggccatccactttctgatatgactacttccaaatta |
376 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13303188 |
cttaattaaattctcatagtagatttgtgcattttcaactgatgcagcaacatcaccatgagaaggccatccactttctgatatgactacttccaaatta |
13303287 |
T |
|
| Q |
377 |
gcacctccaactttctcaagagctgcataaagtgctcctaat |
418 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
13303288 |
gcacctccaactttctcaagagctgcataaagtgctcctaat |
13303329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 77 - 418
Target Start/End: Complemental strand, 13431982 - 13431641
Alignment:
| Q |
77 |
cttccttcttctgattgataagttgttgagttagaagacataagtaaatgactgatttgatacttgagctctttgttaggagtaaacaaaccataatgtc |
176 |
Q |
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||||||||||||| ||| ||||||||||||||||||||||||||| |||||||||||||||||||| | ||| ||||||||||||||||| ||||||| |
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| T |
13431982 |
cttccttcttctggttggggagttgttgagttagaagacataagtaattgactgatttgatacttgagttgtttattaggagtaaacaaaccgtaatgtc |
13431883 |
T |
|
| Q |
177 |
tctctgtttcagcaggtcctttttgattttcatcgaacatggcaaataaataagtttctaatgcttgattaggtctactaatagtcccattagaaacatg |
276 |
Q |
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||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13431882 |
tctctttttcagcaggtccttttttattttcatcgaacatggcaaataaataagtttctaatgcttgattaggtctactaatagtcccattagaaacatg |
13431783 |
T |
|
| Q |
277 |
cttaattaaattctcatagtagatttgtgcattttcaactgatgcagcaacatcaccatgagaaggccatccactttctgatatgactacttccaaatta |
376 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13431782 |
cttaattaaattctcatagtagatttgtgcattttcaactgatgcagcaacatcaccatgagaaggccatccactttctgatatgactacttccaaatta |
13431683 |
T |
|
| Q |
377 |
gcacctccaactttctcaagagctgcataaagtgctcctaat |
418 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
13431682 |
gcacctccaactttctcaagagctgcataaagtgctcctaat |
13431641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 131 - 431
Target Start/End: Complemental strand, 29288878 - 29288578
Alignment:
| Q |
131 |
atttgatacttgagctctttgttaggagtaaacaaaccataatgtctctctgtttcagcaggtcctttttgattttcatcgaacatggcaaataaataag |
230 |
Q |
| |
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|||||||| |||| || ||| | |||||||||||||||||| ||||| || |||||| | |||||||| | ||||||||| |||||||||||||| |||| |
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| T |
29288878 |
atttgatatttgatctgtttatcaggagtaaacaaaccatagtgtctttcagtttcatctggtcctttattattttcatcaaacatggcaaataagtaag |
29288779 |
T |
|
| Q |
231 |
tttctaatgcttgattaggtctactaatagtcccattagaaacatgcttaattaaattctcatagtagatttgtgcattttcaactgatgcagcaacatc |
330 |
Q |
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| ||||||||||||||||| ||| || ||||||| || ||||||||||| |||||||||| |||||||||||||||||||| ||||||||||||| | |
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| T |
29288778 |
tctctaatgcttgattaggcctattaggagtcccagtaatcacatgcttaatcaaattctcatggtagatttgtgcattttcaattgatgcagcaacacc |
29288679 |
T |
|
| Q |
331 |
accatgagaaggccatccactttctgatatgactacttccaaattagcacctccaactttctcaagagctgcataaagtgctcctaatgttgaatcaaat |
430 |
Q |
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||||| |||||||||||||||||||||| |||||||||||||||||||| |||| |||||||||||||||||||||||| |||||||||| ||||||| |
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| T |
29288678 |
accatctgaaggccatccactttctgatactactacttccaaattagcaccaccaattttctcaagagctgcataaagtgcccctaatgttgcatcaaat |
29288579 |
T |
|
| Q |
431 |
a |
431 |
Q |
| |
|
| |
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|
| T |
29288578 |
a |
29288578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 72 - 114
Target Start/End: Original strand, 13302941 - 13302983
Alignment:
| Q |
72 |
atattcttccttcttctgattgataagttgttgagttagaaga |
114 |
Q |
| |
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|||||| |||||||||||||||| |||||||||||||||||| |
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| T |
13302941 |
atattcctccttcttctgattgaggagttgttgagttagaaga |
13302983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 72 - 114
Target Start/End: Complemental strand, 13432029 - 13431987
Alignment:
| Q |
72 |
atattcttccttcttctgattgataagttgttgagttagaaga |
114 |
Q |
| |
|
|||||| |||||||||||||||| |||||||||||||||||| |
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| T |
13432029 |
atattcctccttcttctgattgaggagttgttgagttagaaga |
13431987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 117 - 438
Target Start/End: Original strand, 21286603 - 21286924
Alignment:
| Q |
117 |
taagtaaatgactgatttgatacttgagctctttgttaggagtaaacaaaccataatgtctctctgtttcagcaggtcctttttgattttcatcgaacat |
216 |
Q |
| |
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||||||| |||||||||||||||||||| | ||| | ||| ||||| |||||||||| ||||||||||||||||||||||||||||||||||| ||||| |
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| T |
21286603 |
taagtaattgactgatttgatacttgagttgtttatcaggtgtaaataaaccataatacctctctgtttcagcaggtcctttttgattttcatcaaacat |
21286702 |
T |
|
| Q |
217 |
ggcaaataaataagtttctaatgcttgattaggtctactaatagtcccattagaaacatgcttaattaaattctcatagtagatttgtgcattttcaact |
316 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| | | || |||||| |||||||||||||||||||||||| | |||||||||||||||||||||| |
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| T |
21286703 |
ggcaaataaataagtttccaatgcttgattaggccgattaggagtcccgacagaaacatgcttaattaaattctcgtggtagatttgtgcattttcaact |
21286802 |
T |
|
| Q |
317 |
gatgcagcaacatcaccatgagaaggccatccactttctgatatgactacttccaaattagcacctccaactttctcaagagctgcataaagtgctccta |
416 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||||||||| ||||||| |||||| ||||| |||||||| ||||||||||||||||||||||||| |
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| T |
21286803 |
gatgcaccaacatcaccatgagaaggccatccactttctgatactactactttcaaatttgcaccaccaactttttcaagagctgcataaagtgctccta |
21286902 |
T |
|
| Q |
417 |
atgttgaatcaaataaagtttg |
438 |
Q |
| |
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|||||| |||||||||| |||| |
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|
| T |
21286903 |
atgttgcatcaaataaattttg |
21286924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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