View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6922_high_7 (Length: 394)
Name: NF6922_high_7
Description: NF6922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6922_high_7 |
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Alignment Details
Target: chr3 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 13 - 379
Target Start/End: Original strand, 29339481 - 29339843
Alignment:
| Q |
13 |
aatatgtcactatctaacctaagtgagatggatccataaatatactatactcctgccaaaataattaataacaaattgttgaaatgtgnnnnnnnnnnnn |
112 |
Q |
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| T |
29339481 |
aatatgtcaatatctaacctaagtgagatggatccataaatatactatactcctgccaaaataattaataacaaattgttgaaatgtgttttttttagtt |
29339580 |
T |
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| Q |
113 |
nnnnaaagtattatcttcacacaatcgcagagactaattcttcgtgtatggattatatggtacaaacttgacttaaacaaatcttgcaagcaaacaactt |
212 |
Q |
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| T |
29339581 |
ttttaaagtatcatcttcacacaatcacagagactaaatcttcgtgtatggattatatggtacaaacttgacttaaacaaatcttgcaaacaaacaactt |
29339680 |
T |
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| Q |
213 |
aaacaaatattaatgtaactaacatttatttcccaatcaaacatacggatcagattgaataaaccttcctattaacaaattgttttctttaactgacaag |
312 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29339681 |
aaacaaatattaatgtaac----atttatttcccaatcaaacatacggatcagattgaataaaccttcctattaacaaattgttttctttaactgacaag |
29339776 |
T |
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| Q |
313 |
tgataagttactttaaggttgtcactttgtaagattcttttttgttggaaggggagagggttacatg |
379 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29339777 |
tgatcagttactttaaggttgtcactttgtaagattcttttttgttggaaggggagagggttacatg |
29339843 |
T |
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