View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6922_low_10 (Length: 359)
Name: NF6922_low_10
Description: NF6922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6922_low_10 |
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| [»] scaffold0042 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 329; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 10 - 342
Target Start/End: Original strand, 14766786 - 14767118
Alignment:
| Q |
10 |
attatactaaaattgaccatcgtgattatatatagtctcacaccaatcatagcaaaggaaattgaaacaaacattagtttaaggtctacaaggaagaaat |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14766786 |
attatactaaaattgaccatcgtgattatatatagtctcacaccaatcatagcaaaggaaattgaaacaaacattagtttaaggtctacaaggaagaaat |
14766885 |
T |
|
| Q |
110 |
aatgaaactaggttttggaccaccaatagtaggttggttgatgttgttcttaagcacactatctaactctttaacgaacttctccatggcttgagctggt |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14766886 |
aatgaaactaggttttggaccaccaatagtaggttggttgatgttgttcttaagcacactatctaactctttaacgaacttctccatggcttgagctggt |
14766985 |
T |
|
| Q |
210 |
aaacaaagtggtataaccaaaccttcctctcctttagcatttttgaaaggtatataaaagctagcaacaccaggtatagcaccaactcctcctttagctg |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14766986 |
aaacaaagtggtataaccaaaccttcctctcctttagcatttttgaaaggtatataaaagctagcaacaccaggtatagcaccaactcctcctttagctg |
14767085 |
T |
|
| Q |
310 |
gtccaccatatatagcttttccccaaccaaatt |
342 |
Q |
| |
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|||||||||||| |||||||||||||||||||| |
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| T |
14767086 |
gtccaccatatacagcttttccccaaccaaatt |
14767118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 36 - 265
Target Start/End: Original strand, 14873019 - 14873248
Alignment:
| Q |
36 |
tatatatagtctcacaccaatcatagcaaaggaaattgaaacaaacattagtttaaggtctacaaggaagaaataatgaaactaggttttggaccaccaa |
135 |
Q |
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| T |
14873019 |
tatatatagtctcacacatatcatagcaaaggaaattcatacgaacattagttcaaggtttacaagggagaaattatgaatctaggttttggaccaccca |
14873118 |
T |
|
| Q |
136 |
tagtaggttggttgatgttgttcttaagcacactatctaactctttaacgaacttctccatggcttgagctggtaaacaaagtggtataaccaaaccttc |
235 |
Q |
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| T |
14873119 |
tagtaggttggttaattttgttcttaagcacaccatccaactctttaatgaacctctccatggctttagttggcaaacaaactggtataaccaaaccttc |
14873218 |
T |
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| Q |
236 |
ctctcctttagcatttttgaaaggtatata |
265 |
Q |
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| T |
14873219 |
tattcctttagcatttttaaatggtatata |
14873248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 157 - 338
Target Start/End: Original strand, 14786016 - 14786197
Alignment:
| Q |
157 |
tcttaagcacactatctaactctttaacgaacttctccatggcttgagctggtaaacaaagtggtataaccaaaccttcctctcctttagcatttttgaa |
256 |
Q |
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|||||||||||||||| | |||||||| ||| |||||||| ||||| ||| ||| ||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
14786016 |
tcttaagcacactatccatttctttaacaaacctctccatgacttgatttggaaaataaaatggtataaccaaaccttcctctcctttagcatttttgaa |
14786115 |
T |
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| Q |
257 |
aggtatataaaagctagcaacaccaggtatagcaccaactcctcctttagctggtccaccatatatagcttttccccaacca |
338 |
Q |
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| T |
14786116 |
aggtatatgaaagctagcaagaccaggaatatcaccatctgctcctctagctggtcctccatagatgggtttcccccaacca |
14786197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 136 - 340
Target Start/End: Original strand, 14877850 - 14878054
Alignment:
| Q |
136 |
tagtaggttggttgatgttgttcttaagcacactatctaactctttaacgaacttctccatggcttgagctggtaaacaaagtggtataaccaaaccttc |
235 |
Q |
| |
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||||||| ||||| |||||||||||||| |||||||| ||||||||||| ||| |||||||| |||||| ||| ||| ||| ||||||||||||||||| |
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| T |
14877850 |
tagtaggctggttaatgttgttcttaagaacactatccaactctttaaccaacctctccatgacttgagttggcaaaaaaactggtataaccaaaccttt |
14877949 |
T |
|
| Q |
236 |
ctctcctttagcatttttgaaaggtatataaaagctagcaacaccaggtatagcaccaactcctcctttagctggtccaccatatatagcttttccccaa |
335 |
Q |
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|||||||||| ||||| | || || |||| |||| ||| |||||| | ||||||| | ||||||||||||||||| ||||| | |||||| |||||| |
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| T |
14877950 |
ctctcctttatcatttgtaaatggaatatgaaagacagcttgaccaggaagagcaccatcccctcctttagctggtcctccataaacagctttcccccaa |
14878049 |
T |
|
| Q |
336 |
ccaaa |
340 |
Q |
| |
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||||| |
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| T |
14878050 |
ccaaa |
14878054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 174 - 342
Target Start/End: Complemental strand, 14759852 - 14759684
Alignment:
| Q |
174 |
aactctttaacgaacttctccatggcttgagctggtaaacaaagtggtataaccaaaccttcctctcctttagcatttttgaaaggtatataaaagctag |
273 |
Q |
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||||||||||| ||| |||||||| ||||||| || || ||| ||||||||||||||||| |||||||||||||||||||||||||||| ||| || |
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| T |
14759852 |
aactctttaaccaacctctccatgacttgagcaggcaagaaaaacggtataaccaaaccttcttctcctttagcatttttgaaaggtatatgaaatacag |
14759753 |
T |
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| Q |
274 |
caacaccaggtatagcaccaactcctcctttagctggtccaccatatatagcttttccccaaccaaatt |
342 |
Q |
| |
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| T |
14759752 |
cttgaccaggaatagcaacatcacctcctttagccattcctccatagagagctttcccccaaccaaatt |
14759684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 88 - 172
Target Start/End: Original strand, 14872226 - 14872310
Alignment:
| Q |
88 |
ttaaggtctacaaggaagaaataatgaaactaggttttggaccaccaatagtaggttggttgatgttgttcttaagcacactatc |
172 |
Q |
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||||||| ||||| |||||||||| || ||||||||| |||||| | ||||||||||| | |||||||||||||||||| |||| |
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| T |
14872226 |
ttaaggtttacaatgaagaaataacgagactaggtttcggaccatccttagtaggttggctaatgttgttcttaagcacattatc |
14872310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0042 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: scaffold0042
Description:
Target: scaffold0042; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 89 - 340
Target Start/End: Original strand, 83863 - 84114
Alignment:
| Q |
89 |
taaggtctacaaggaagaaataatgaaactaggttttggaccaccaatagtaggttggttgatgttgttcttaagcacactatctaactctttaacgaac |
188 |
Q |
| |
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||||| |||||| |||||| |||||| | || |||| | |||| |||||||| ||| |||||||||||||| || |||| ||||||||||| ||| |
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| T |
83863 |
taaggactacaacgaagaattaatgattccagattttctatcacccatagtaggcgagttaatgttgttcttaagaactttatccaactctttaaccaac |
83962 |
T |
|
| Q |
189 |
ttctccatggcttgagctggtaaacaaagtggtataaccaaaccttcctctcctttagcatttttgaaaggtatataaaagctagcaacaccaggtatag |
288 |
Q |
| |
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|||| ||| |||||| ||| ||| ||| ||||||||| |||||||||||||||||||||||||| ||||||||||||| | ||| || |||||| ||| |
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| T |
83963 |
ctctcgatgacttgagttggaaaaaaaactggtataacaaaaccttcctctcctttagcatttttaaaaggtatataaatggtagaaataccaggattag |
84062 |
T |
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| Q |
289 |
caccaactcctcctttagctggtccaccatatatagcttttccccaaccaaa |
340 |
Q |
| |
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|||| ||||| || ||||| ||| ||||| | |||||| ||||||||||| |
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| T |
84063 |
taccatctcctgctctagctaatcctccataaacagctttcccccaaccaaa |
84114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 230 - 340
Target Start/End: Original strand, 11999596 - 11999706
Alignment:
| Q |
230 |
accttcctctcctttagcatttttgaaaggtatataaaagctagcaacaccaggtatagcaccaactcctcctttagctggtccaccatatatagctttt |
329 |
Q |
| |
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|||||||||||||||| ||||||| |||| |||| ||||| ||||| ||| || ||||||| ||||||||||||||||||| ||||| | || ||| |
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| T |
11999596 |
accttcctctcctttaacatttttaaaagctatacgaaagcaagcaagaccgggattagcaccgtctcctcctttagctggtcctccatacacaggtttc |
11999695 |
T |
|
| Q |
330 |
ccccaaccaaa |
340 |
Q |
| |
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||||||||||| |
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|
| T |
11999696 |
ccccaaccaaa |
11999706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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