View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6922_low_12 (Length: 327)
Name: NF6922_low_12
Description: NF6922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6922_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 1 - 318
Target Start/End: Original strand, 2302759 - 2303076
Alignment:
| Q |
1 |
acaatggttttagttttgatattgttacttctactacacaagttcaacataaacattggcagaatctttatcatattggaaataattcagggaatgtgaa |
100 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |
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| T |
2302759 |
acaatggttttagttttgatattggtacttctactacacaagttcaacataaacattggcaaaatctttatcagattggaaataattcagggaatgtgaa |
2302858 |
T |
|
| Q |
101 |
ttcaattagtgatattgggttgattaatagtgggcctgcggctacgtctagtgcttgggaggatgttggatccacctcgtttccggagttattagctaga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2302859 |
ttcaattagtgatattgggttgattaatagtgggcctgcggctacgtctagtgcttgggaggatgttggatccacctcgtttccggagttattagctaga |
2302958 |
T |
|
| Q |
201 |
aaatcgcatagtgatggtcagagtaatgttgttgaacatttggcggctgcggaaagtaaagagggagtaggacccgcaggtgatgttcgtcgaggaatac |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2302959 |
aaatcgcatagtgatggtcagagtaatgttgttgaacatttggcggctgcggaaagtaaagagggagtaggacccgcaggtgatgttcgtcgaggaatac |
2303058 |
T |
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| Q |
301 |
agacaaagatgatgtcca |
318 |
Q |
| |
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|||||||||||| |||| |
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| T |
2303059 |
ggacaaagatgatatcca |
2303076 |
T |
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