View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6922_low_13 (Length: 308)

Name: NF6922_low_13
Description: NF6922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6922_low_13
NF6922_low_13
[»] chr1 (1 HSPs)
chr1 (18-293)||(10755864-10756139)
[»] chr8 (7 HSPs)
chr8 (21-293)||(2711493-2711765)
chr8 (16-225)||(3002025-3002234)
chr8 (22-293)||(2988974-2989245)
chr8 (18-232)||(9851304-9851518)
chr8 (21-293)||(3142373-3142648)
chr8 (174-293)||(2916491-2916610)
chr8 (18-87)||(3170474-3170543)
[»] chr6 (1 HSPs)
chr6 (22-293)||(18355371-18355642)
[»] chr4 (1 HSPs)
chr4 (182-289)||(8572685-8572792)
[»] chr3 (1 HSPs)
chr3 (182-289)||(28698645-28698752)
[»] scaffold0065 (2 HSPs)
scaffold0065 (18-293)||(45087-45365)
scaffold0065 (18-209)||(50343-50533)
[»] chr7 (1 HSPs)
chr7 (18-293)||(3919356-3919634)


Alignment Details
Target: chr1 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 18 - 293
Target Start/End: Original strand, 10755864 - 10756139
Alignment:
Q  18 acccagacatatctttcaccacatcattaaaacctttttgtattttttcaatctctagagccattttacgacaaaaaacagctttgcttaaagagaaaga 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10755864 acccagacatatctttcaccacatcattaaaacctttttgtattttttcaatctctagagccattttacgacaaaaaacagctttgcttaaagagaaaga 10755963  T
Q  118 atgaagtacctttgttactttgttcttatgagcttcatcccttttgcgtatcatatcttcaataagaaattcatctatcaaatcatctgcagcaacaagc 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10755964 atgaagtacctttgttactttgttcttatgagcttcatcccttttgcgtatcatatcttcaataagaaattcatctatcaaatcatctgcagcaacaagc 10756063  T
Q  218 acatctttcagccttgtaacccagttttgtacacaaagacttttctcttgtttgttctcagcatcaaggagcacag 293  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10756064 acatctttgagccttgtaacccagttttgtacacaaagacttttctcttgtttgttctcagcatcaaggagcacag 10756139  T

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Target: chr8 (Bit Score: 137; Significance: 1e-71; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 21 - 293
Target Start/End: Original strand, 2711493 - 2711765
Alignment:
Q  21 cagacatatctttcaccacatcattaaaacctttttgtattttttcaatctctagagccattttacgacaaaaaacagctttgcttaaagagaaagaatg 120  Q
    |||||||||||||||| |||||||||| || |||||||||||||||||||||  ||||||||||||| | |||| ||||| ||||||  || || |||||    
T  2711493 cagacatatctttcacaacatcattaacacttttttgtattttttcaatctcatgagccattttacggcgaaaagcagctctgcttatggataaggaatg 2711592  T
Q  121 aagtacctttgttactttgttcttatgagcttcatcccttttgcgtatcatatcttcaataagaaattcatctatcaaatcatctgcagcaacaagcaca 220  Q
    || |||||  || |||||||| |||||||||| |||||||||  |||||||||||||||||||||| ||||||||||||||||| |||| || |||||||    
T  2711593 aaatacctgagtcactttgttgttatgagctttatcccttttatgtatcatatcttcaataagaaactcatctatcaaatcatcagcaggaagaagcaca 2711692  T
Q  221 tctttcagccttgtaacccagttttgtacacaaagacttttctcttgtttgttctcagcatcaaggagcacag 293  Q
    ||||| |||||| |||||||||||||||||  | |||||| |||||||||||  |||||||||||||| ||||    
T  2711693 tctttgagccttctaacccagttttgtacagcatgactttgctcttgtttgtcttcagcatcaaggaggacag 2711765  T

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Target: chr8; HSP #2
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 16 - 225
Target Start/End: Complemental strand, 3002234 - 3002025
Alignment:
Q  16 tcacccagacatatctttcaccacatcattaaaacctttttgtattttttcaatctctagagccattttacgacaaaaaacagctttgcttaaagagaaa 115  Q
    ||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| |||||||||||| | |||||| ||||| |||||| ||||||     
T  3002234 tcacccagacatatctttcacaacatcattaaaacttttttgtattttttcaatctcaagagccattttatggcaaaaagcagctctgcttagagagaag 3002135  T
Q  116 gaatgaagtacctttgttactttgttcttatgagcttcatcccttttgcgtatcatatcttcaataagaaattcatctatcaaatcatctgcagcaacaa 215  Q
    ||||||| ||||| ||| ||||||||||||| ||||| |||||||||| |||||||||||||||||||||| ||||||||||||||| | |||| || ||    
T  3002134 gaatgaaatacctgtgtcactttgttcttatcagctttatcccttttgtgtatcatatcttcaataagaaactcatctatcaaatcaacagcaggaagaa 3002035  T
Q  216 gcacatcttt 225  Q
    |||| |||||    
T  3002034 gcacgtcttt 3002025  T

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Target: chr8; HSP #3
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 22 - 293
Target Start/End: Complemental strand, 2989245 - 2988974
Alignment:
Q  22 agacatatctttcaccacatcattaaaacctttttgtattttttcaatctctagagccattttacgacaaaaaacagctttgcttaaagagaaagaatga 121  Q
    ||||||||||| | | ||||| ||||||| | |||||||||||||||||||  ||||||||||||| | |||| ||| | |||||    |||| ||||||    
T  2989245 agacatatcttcctcaacatctttaaaacttctttgtattttttcaatctcatgagccattttacggcgaaaagcagttctgcttggtaagaaggaatga 2989146  T
Q  122 agtacctttgttactttgttcttatgagcttcatcccttttgcgtatcatatcttcaataagaaattcatctatcaaatcatctgcagcaacaagcacat 221  Q
    | ||||| ||| ||||||||||||||||||| ||||| |||| |||||||||||||||||||||| |||||||||||||||||||||| || |||||| |    
T  2989145 attacctgtgtcactttgttcttatgagctttatcccgtttgtgtatcatatcttcaataagaaactcatctatcaaatcatctgcaggaagaagcacgt 2989046  T
Q  222 ctttcagccttgtaacccagttttgtacacaaagacttttctcttgtttgttctcagcatcaaggagcacag 293  Q
    |||| |||||| | ||||||  |||||||  | |||||||||||||||| | ||||||||||||||| ||||    
T  2989045 ctttgagccttcttacccagacttgtacagcaggacttttctcttgtttctcctcagcatcaaggagtacag 2988974  T

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Target: chr8; HSP #4
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 18 - 232
Target Start/End: Original strand, 9851304 - 9851518
Alignment:
Q  18 acccagacatatctttcaccacatcattaaaacctttttgtattttttcaatctctagagccattttacgacaaaaaacagctttgcttaaagagaaaga 117  Q
    |||||||||||||||| || |||||||||||||||||||||||||||||||||||    ||||||||||| | ||||  |  |||| ||  ||| || ||    
T  9851304 acccagacatatcttttactacatcattaaaacctttttgtattttttcaatctcatatgccattttacggcgaaaagaaattttgtttggagataagga 9851403  T
Q  118 atgaagtacctttgttactttgttcttatgagcttcatcccttttgcgtatcatatcttcaataagaaattcatctatcaaatcatctgcagcaacaagc 217  Q
    |||||||||||||||||||||||||||||||| ||||||| |||||    ||||||||||||||| ||||||||||| |||||||||||||| |  ||||    
T  9851404 atgaagtacctttgttactttgttcttatgagtttcatccattttgttcctcatatcttcaataacaaattcatctagcaaatcatctgcaggatgaagc 9851503  T
Q  218 acatctttcagcctt 232  Q
    |||||||| ||||||    
T  9851504 acatctttgagcctt 9851518  T

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Target: chr8; HSP #5
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 21 - 293
Target Start/End: Original strand, 3142373 - 3142648
Alignment:
Q  21 cagacatatctttcaccacatcattaaaacctttttgtattttttcaatctctagagccattttacgacaaaaaacagctttgcttaaagagaaagaatg 120  Q
    ||||||||||||||||||||||||||||    |||||||| ||||||| |||   |||||||||||| | |||| ||  | |  |   ||| ||||||||    
T  3142373 cagacatatctttcaccacatcattaaacttcttttgtatcttttcaacctcataagccattttacggctaaaagcaattctattcggagataaagaatg 3142472  T
Q  121 aagtacctttgttactttgttcttatgagcttcatcccttttgcgtatcatatcttcaataagaaattcatctatcaaatcatctgcagcaacaagca-- 218  Q
    ||| |||| |||||||||||||||| |||||||||||| |||  || |||| ||||| |||  ||||||||||| ||| ||||| |||| |  ||| |      
T  3142473 aagcacctgtgttactttgttcttacgagcttcatcccgtttttgtctcatgtcttcgatagcaaattcatctagcaagtcatcagcaggatgaagtaca 3142572  T
Q  219 -catctttcagccttgtaacccagttttgtacacaaagacttttctcttgtttgttctcagcatcaaggagcacag 293  Q
     ||||||| || ||| | | |||| ||||||||  | ||||||||||||||||||  |||||||||||||||||||    
T  3142573 tcatctttgagtcttcttatccagatttgtacagcatgacttttctcttgtttgtcttcagcatcaaggagcacag 3142648  T

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Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 174 - 293
Target Start/End: Original strand, 2916491 - 2916610
Alignment:
Q  174 cttcaataagaaattcatctatcaaatcatctgcagcaacaagcacatctttcagccttgtaacccagttttgtacacaaagacttttctcttgtttgtt 273  Q
    ||||||||| ||||||||||| ||| ||||| |||| |  ||||||||| || || ||| ||| |||||||||||||  | |  |||  |||||||| |     
T  2916491 cttcaataacaaattcatctagcaagtcatcagcaggatgaagcacatcattgagtcttctaatccagttttgtacagcatggttttgttcttgtttctc 2916590  T
Q  274 ctcagcatcaaggagcacag 293  Q
    ||||||||||||||||||||    
T  2916591 ctcagcatcaaggagcacag 2916610  T

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Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 87
Target Start/End: Original strand, 3170474 - 3170543
Alignment:
Q  18 acccagacatatctttcaccacatcattaaaacctttttgtattttttcaatctctagagccattttacg 87  Q
    |||||| ||||||||||||||| ||||||||     |||||| ||||||||||||  |||||||||||||    
T  3170474 acccaggcatatctttcaccacgtcattaaatttggtttgtaatttttcaatctcatgagccattttacg 3170543  T

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Target: chr6 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 22 - 293
Target Start/End: Complemental strand, 18355642 - 18355371
Alignment:
Q  22 agacatatctttcaccacatcattaaaacctttttgtattttttcaatctctagagccattttacgacaaaaaacagctttgcttaaagagaaagaatga 121  Q
    ||||||||||||| | ||||| ||||||| | |||||||||||||||||||  ||||||||||||| | |||| ||| | |||||   ||||| ||||||    
T  18355642 agacatatctttctcaacatctttaaaacttctttgtattttttcaatctcatgagccattttacggcgaaaagcagttctgcttggtgagaaggaatga 18355543  T
Q  122 agtacctttgttactttgttcttatgagcttcatcccttttgcgtatcatatcttcaataagaaattcatctatcaaatcatctgcagcaacaagcacat 221  Q
    | ||||| | | ||||||||||||||||||| |||||||||| |||||||||||||||||| |||||||||||||||||||||||||| || |||||  |    
T  18355542 aatacctgtttcactttgttcttatgagctttatcccttttgtgtatcatatcttcaataaaaaattcatctatcaaatcatctgcaggaagaagcaggt 18355443  T
Q  222 ctttcagccttgtaacccagttttgtacacaaagacttttctcttgtttgttctcagcatcaaggagcacag 293  Q
    | || |||||| ||||||||  |||||||  | |||||| |||||||||||  |||||||||||||||||||    
T  18355442 cgttgagccttctaacccagagttgtacagcatgactttgctcttgtttgtcttcagcatcaaggagcacag 18355371  T

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Target: chr4 (Bit Score: 104; Significance: 7e-52; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 182 - 289
Target Start/End: Complemental strand, 8572792 - 8572685
Alignment:
Q  182 agaaattcatctatcaaatcatctgcagcaacaagcacatctttcagccttgtaacccagttttgtacacaaagacttttctcttgtttgttctcagcat 281  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8572792 agaaattcatctatcaaatcatctgcagcaacaagcacatctttgagccttgtaacccagttttgtacacaaagacttttctcttgtttgttctcagcat 8572693  T
Q  282 caaggagc 289  Q
    ||||||||    
T  8572692 caaggagc 8572685  T

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Target: chr3 (Bit Score: 104; Significance: 7e-52; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 182 - 289
Target Start/End: Complemental strand, 28698752 - 28698645
Alignment:
Q  182 agaaattcatctatcaaatcatctgcagcaacaagcacatctttcagccttgtaacccagttttgtacacaaagacttttctcttgtttgttctcagcat 281  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28698752 agaaattcatctatcaaatcatctgcagcaacaagcacatctttgagccttgtaacccagttttgtacacaaagacttttctcttgtttgttctcagcat 28698653  T
Q  282 caaggagc 289  Q
    ||||||||    
T  28698652 caaggagc 28698645  T

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Target: scaffold0065 (Bit Score: 69; Significance: 6e-31; HSPs: 2)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 18 - 293
Target Start/End: Complemental strand, 45365 - 45087
Alignment:
Q  18 acccagacatatctttcaccacatcattaaaacctttttgtattttttcaatctctagagccattttacgacaaaaaacagctttgcttaaagagaaaga 117  Q
    |||||||||||||||||||||| ||||||||   | |||||||||||||||||||  ||||||||||||| | |||| ||  | |  ||  ||| ||       
T  45365 acccagacatatctttcaccacgtcattaaattttgtttgtattttttcaatctcatgagccattttacggctaaaagcaattctatttggagataagcg 45266  T
Q  118 atgaagtacctttgttactttgttcttatgagcttcatcccttttgcgtatcatatcttcaataagaaattcatctatcaaatcatctgcagcaacaagc 217  Q
    ||||||||||| ||| |||||||||||  |||||||||||| |||| || |||| |||||||||  ||||||||||| ||||||||| |||| |  ||||    
T  45265 atgaagtacctgtgtcactttgttcttgcgagcttcatcccgtttgtgtctcatgtcttcaatagaaaattcatctagcaaatcatcagcaggatgaagc 45166  T
Q  218 acatc---tttcagccttgtaacccagttttgtacacaaagacttttctcttgtttgttctcagcatcaaggagcacag 293  Q
    |||||   ||| || ||| | | ||||||||| |||| | ||||||  | |||||| | ||||||||||||||||||||    
T  45165 acatcatctttgagtcttcttatccagttttgcacaccatgactttgttgttgtttctcctcagcatcaaggagcacag 45087  T

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Target: scaffold0065; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 18 - 209
Target Start/End: Complemental strand, 50533 - 50343
Alignment:
Q  18 acccagacatatctttcaccacatcattaaaacctttttgtattttttcaatctctagagccattttacgacaaaaaacagctttgcttaaagagaaaga 117  Q
    |||||||||||||||||||||||||||| |||  |||||||||||||||||||||  ||||||||||| | | |||| ||  | || ||  ||| |||||    
T  50533 acccagacatatctttcaccacatcatt-aaatttttttgtattttttcaatctcatgagccattttaaggcgaaaagcaattctgtttggagataaaga 50435  T
Q  118 atgaagtacctttgttactttgttcttatgagcttcatcccttttgcgtatcatatcttcaataagaaattcatctatcaaatcatctgcag 209  Q
    ||||||||||| | | | ||| |||||| |||||||||| | |||| || ||| ||||||||||||||||| ||||| ||| ||||| ||||    
T  50434 atgaagtacctgtctcagttttttcttacgagcttcatctcgtttgtgtctcaaatcttcaataagaaatttatctagcaagtcatcagcag 50343  T

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Target: chr7 (Bit Score: 69; Significance: 6e-31; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 18 - 293
Target Start/End: Original strand, 3919356 - 3919634
Alignment:
Q  18 acccagacatatctttcaccacatcattaaaacctttttgtattttttcaatctctagagccattttacgacaaaaaacagctttgcttaaagagaaaga 117  Q
    ||||||||||||| |||||||||||||||||   | |||||| ||||||||||||  ||||||||||||| | |||| ||  | || ||  ||| || ||    
T  3919356 acccagacatatcattcaccacatcattaaattttgtttgtagtttttcaatctcatgagccattttacggcgaaaagcaaatctgtttggagataagga 3919455  T
Q  118 atgaagtacctttgttactttgttcttatgagcttcatcccttttgcgtatcatatcttcaataagaaattcatctatcaaatcatctgcagcaacaagc 217  Q
    ||||||||||||||||||||||||||||| |||||| ||  ||||| || ||||||| | ||||| ||||||||| | ||| ||||| |||| |  ||||    
T  3919456 atgaagtacctttgttactttgttcttatcagcttcctcaattttgtgtctcatatcgtgaataacaaattcatcgagcaagtcatcagcaggatgaagc 3919555  T
Q  218 a---catctttcagccttgtaacccagttttgtacacaaagacttttctcttgtttgttctcagcatcaaggagcacag 293  Q
    |   ||||||| |||||| | | ||||||||| |||| | || |||  | |||||| | ||| ||||||||||||||||    
T  3919556 acatcatctttgagccttcttatccagttttgcacaccatgattttgttgttgtttctcctcggcatcaaggagcacag 3919634  T

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