View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6922_low_17 (Length: 266)
Name: NF6922_low_17
Description: NF6922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6922_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 19 - 256
Target Start/End: Original strand, 22795490 - 22795727
Alignment:
| Q |
19 |
acatatatgaatacgaaatatatgatggttaagttttaatttaattggtttttcagatctttgcatctgatagcttcttagagcttacagagtattctcg |
118 |
Q |
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| T |
22795490 |
acatatatgaatacgaaatatatgatggttaagttttaatttaattggtttttcagatctttgcatctgatagcttcttagagcttacagagtattctcg |
22795589 |
T |
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| Q |
119 |
tgaagaaatcttgggaagaaattgcaggtcctgtcattctcaaaaaatgatatatacttggaaataatctagaaggtttttgcataatgacaaaatttta |
218 |
Q |
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| T |
22795590 |
tgaagaaatcttgggaagaaattgcaggtcctgtcattctcaaaaaatgatatatacttggaaataatctagaaggtttttgcataatgacaaaatttta |
22795689 |
T |
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| Q |
219 |
tggtatttatttatatatgctatttgatgacacaggtt |
256 |
Q |
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| T |
22795690 |
tggtatttatttatatatgctatttgatgatacaggtt |
22795727 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 67 - 147
Target Start/End: Original strand, 40960662 - 40960742
Alignment:
| Q |
67 |
tttttcagatctttgcatctgatagcttcttagagcttacagagtattctcgtgaagaaatcttgggaagaaattgcaggt |
147 |
Q |
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| T |
40960662 |
tttttcagatatttgcatctgatagcttcttagagcttacagaatatagtcgtgaagaaatattgggaagaaattgcaggt |
40960742 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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