View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6922_low_18 (Length: 253)
Name: NF6922_low_18
Description: NF6922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6922_low_18 |
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| [»] chr8 (4 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 239; Significance: 1e-132; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 3 - 253
Target Start/End: Original strand, 13853676 - 13853926
Alignment:
| Q |
3 |
catctccaataatattaacaaaacaaccaattatgtcactaaccggaaggtgtcccttaacaggaagatccttaataggaggtgtctcatcttgaacagg |
102 |
Q |
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| T |
13853676 |
catctccaacaacattaacaaaacaaccaattatgtcactaaccggaaggtgtcccttaacaggaagatccttaataggaggtgtctcatcttgaacagg |
13853775 |
T |
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| Q |
103 |
tgcaaaattaccagcaagccaatgatgacaaagtgaagaatcataaaagaatttcacaacaagcttctccaacaagtcaacagcttttgaactgaaacat |
202 |
Q |
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| T |
13853776 |
tgcaaaattaccagcaagccaatgatgacaaagtgaagaatcataaaagaatttcacaacaagcttttccaacaagtcaacagcttttgaactgaaacat |
13853875 |
T |
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| Q |
203 |
tttcttggttttggttccactttcacaatccctcgtctaagtgaaaatgat |
253 |
Q |
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| T |
13853876 |
tttcttggttttggttccactttcacaatccctcgtctaagtgaaaatgat |
13853926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 15 - 236
Target Start/End: Original strand, 13872539 - 13872760
Alignment:
| Q |
15 |
tattaacaaaacaaccaattatgtcactaaccggaaggtgtcccttaacaggaagatccttaataggaggtgtctcatcttgaacaggtgcaaaattacc |
114 |
Q |
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| T |
13872539 |
tattatcaaaacaaccacttatgtcactaaccggaaggtgtcctttaacaggaagatcctttgtaggaggtgtctcatctttgacaggagcaaaattacc |
13872638 |
T |
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| Q |
115 |
agcaagccaatgatgacaaagtgaagaatcataaaagaatttcacaacaagcttctccaacaagtcaacagcttttgaactgaaacattttcttggtttt |
214 |
Q |
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| T |
13872639 |
agcaatccagtgatgagaaagtgaagaatcataaaagaacttcacaacaagattctccaacaaatcaacagcttttgaagtgaaacattttcttggtttt |
13872738 |
T |
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| Q |
215 |
ggttccactttcacaatccctc |
236 |
Q |
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| T |
13872739 |
ggttccactttcacaatccctc |
13872760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 38 - 253
Target Start/End: Original strand, 13895030 - 13895245
Alignment:
| Q |
38 |
tcactaaccggaaggtgtcccttaacaggaagatccttaataggaggtgtctcatcttgaacaggtgcaaaattaccagcaagccaatgatgacaaagtg |
137 |
Q |
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| T |
13895030 |
tcacttaccggaaggtagcctttaacaggaaggtccttagtaggaggtgtctcatccttaacaggtgcaaaattaccggcaagccaatgatgaggaagtg |
13895129 |
T |
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| Q |
138 |
aagaatcataaaagaatttcacaacaagcttctccaacaagtcaacagcttttgaactgaaacattttcttggttttggttccactttcacaatccctcg |
237 |
Q |
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| T |
13895130 |
atgaatcataaaacaacttcaccacaagcttctccaacaaatcaacagcttttgaactgaaacattttcttggttttggttccactttcacaatccctcg |
13895229 |
T |
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| Q |
238 |
tctaagtgaaaatgat |
253 |
Q |
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| T |
13895230 |
tctaagtgaaaatgat |
13895245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 22 - 236
Target Start/End: Original strand, 13902778 - 13902993
Alignment:
| Q |
22 |
aaaacaaccaatta-tgtcactaaccggaaggtgtcccttaacaggaagatccttaataggaggtgtctcatcttgaacaggtgcaaaattaccagcaag |
120 |
Q |
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| T |
13902778 |
aaaacaaccaattactatcactaaccggaaggtgtcctttaataggaagatccttaataggaggtgtttcatccttaacaggtgcaaaattaccagcaag |
13902877 |
T |
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| Q |
121 |
ccaatgatgacaaagtgaagaatcataaaagaatttcacaacaagcttctccaacaagtcaacagcttttgaactgaaacattttcttggttttggttcc |
220 |
Q |
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| T |
13902878 |
ccaatgatgaggaagcgaagaatcataaaacaacttcacaataatcttctccaataaatcaacagcttttgaagtgaaaccattactgggttttggttcc |
13902977 |
T |
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| Q |
221 |
actttcacaatccctc |
236 |
Q |
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| T |
13902978 |
actttcacaattcctc |
13902993 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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