View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6922_low_19 (Length: 253)
Name: NF6922_low_19
Description: NF6922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6922_low_19 |
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| [»] scaffold0188 (1 HSPs) |
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Alignment Details
Target: scaffold0188 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: scaffold0188
Description:
Target: scaffold0188; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 16 - 237
Target Start/End: Original strand, 8831 - 9054
Alignment:
| Q |
16 |
gtagtttgatttgtattatgaa--ggttagtgaaaagttaagttattatcataacttatgatgatacatgtttggtctctagctagcattcctacatgca |
113 |
Q |
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| T |
8831 |
gtagtttgatttgtattatgaaaagattagtgaaaagttaagttattatcataacttatgttgatacatgtttggtctctggctagcattcctacatgca |
8930 |
T |
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| Q |
114 |
ttgttgtggaatcactaatatcttttccttgctttaagttttaatgttttaatatatggttgatcgtaatgaaggttcatataacacaaggcgatcatgt |
213 |
Q |
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| T |
8931 |
ttgttatggaatcactaatatcttttccttgcttaaagttttaatgttttaatatatggttgatcgtaatgaaggttcatataacacaaggcgatcatgt |
9030 |
T |
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| Q |
214 |
ggggaaagcagtgatcgtatcgtg |
237 |
Q |
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| T |
9031 |
ggggaaagcagtgatcgtatcgtg |
9054 |
T |
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Target: chr4 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 135 - 237
Target Start/End: Original strand, 13637780 - 13637882
Alignment:
| Q |
135 |
cttttccttgctttaagttttaatgttttaatatatggttgatcgtaatgaaggttcatataacacaaggcgatcatgtggggaaagcagtgatcgtatc |
234 |
Q |
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| T |
13637780 |
cttttccttacttttagtttcaatgttttaatgtatgattggtctgaatgaaggttcatataacacaaggtgatcatgtggggaaagcagtgatcgtatc |
13637879 |
T |
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| Q |
235 |
gtg |
237 |
Q |
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| T |
13637880 |
gtg |
13637882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 186 - 237
Target Start/End: Complemental strand, 50981619 - 50981568
Alignment:
| Q |
186 |
aggttcatataacacaaggcgatcatgtggggaaagcagtgatcgtatcgtg |
237 |
Q |
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| T |
50981619 |
aggttcatattacacaaggtgatcttgttgggaaagaagtgatcgtatcgtg |
50981568 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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