View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6922_low_20 (Length: 241)
Name: NF6922_low_20
Description: NF6922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6922_low_20 |
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Alignment Details
Target: chr8 (Bit Score: 184; Significance: 1e-99; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 13854334 - 13854556
Alignment:
| Q |
1 |
cgtaataataaagtaaatgacataatggtaagatgt-acggaatgtatgtgtaaaagtttattttatcaacggcagagtacgaattaaattccaagcaaa |
99 |
Q |
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| T |
13854334 |
cgtaataataaagtaaatgacataattgtaagatatgacggaatgtatgtgtaaaagttttttttatcaacagc-gagtacgaattaaattccaagcaaa |
13854432 |
T |
|
| Q |
100 |
attacctcatgagcctgttatcttaattttcaattttatatttggcattgtttacctacaaattcatgtaaaaacataataggattaagttgaaataaga |
199 |
Q |
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| T |
13854433 |
attacctcatgagcctgttatcttaattttcaattttatatttggcattgtttacctacaaattcatgtaaaaacataataggattaagttgaaataaga |
13854532 |
T |
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| Q |
200 |
taaaatagagaagttagtaacttg |
223 |
Q |
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|||||||||| || |||||||||| |
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| T |
13854533 |
taaaatagaggagctagtaacttg |
13854556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 2 - 223
Target Start/End: Original strand, 13873041 - 13873269
Alignment:
| Q |
2 |
gtaataataaagtaaa-tgacataatggtaagatgt-acggaatgtatgtgtaaaagtttattttatc----aacggcagagtacgaattaaattccaag |
95 |
Q |
| |
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|||||||||||||||| ||||||||| |||||| | || |||||||||||||||||||| |||| | |||||| || |||||||||||||||||| |
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| T |
13873041 |
gtaataataaagtaaagtgacataatattaagatatgaccgaatgtatgtgtaaaagttttttttttttactaacggc-gaatacgaattaaattccaag |
13873139 |
T |
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| Q |
96 |
caaaattacctcatgagcctgttatctta----attttcaattttatatttggcattgtttacctacaaattcatgt-aaaaacataataggattaagtt |
190 |
Q |
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| T |
13873140 |
caa---tacctcatgagtctgttattttatgtaatttccaattttatatttggccttgtttacctacaaattcatgtaaaaaaaataataggattaaatt |
13873236 |
T |
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| Q |
191 |
gaaataagataaaatagagaagttagtaacttg |
223 |
Q |
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| T |
13873237 |
gaaatatgataaaatagaggagctagtaacttg |
13873269 |
T |
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