View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6922_low_6 (Length: 404)

Name: NF6922_low_6
Description: NF6922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6922_low_6
NF6922_low_6
[»] chr7 (15 HSPs)
chr7 (13-393)||(2264262-2264642)
chr7 (197-364)||(16555809-16555976)
chr7 (197-364)||(16609686-16609853)
chr7 (28-154)||(14124201-14124326)
chr7 (28-154)||(14427597-14427722)
chr7 (52-135)||(12173331-12173414)
chr7 (28-156)||(48236194-48236318)
chr7 (199-296)||(14124425-14124522)
chr7 (199-296)||(14427821-14427918)
chr7 (199-393)||(9708536-9708730)
chr7 (333-393)||(14124521-14124581)
chr7 (333-393)||(14427917-14427977)
chr7 (29-112)||(4428098-4428181)
chr7 (52-96)||(13031152-13031196)
chr7 (52-96)||(13136999-13137043)
[»] chr8 (10 HSPs)
chr8 (198-366)||(15334759-15334927)
chr8 (198-366)||(15423822-15423990)
chr8 (198-366)||(15515128-15515296)
chr8 (31-140)||(3597320-3597429)
chr8 (28-156)||(15335023-15335150)
chr8 (28-156)||(15424086-15424213)
chr8 (28-156)||(15515392-15515519)
chr8 (52-140)||(19928098-19928186)
chr8 (13-154)||(22664142-22664287)
chr8 (331-392)||(20381145-20381206)
[»] chr2 (2 HSPs)
chr2 (198-393)||(28710501-28710696)
chr2 (14-137)||(28710801-28710923)
[»] scaffold0414 (1 HSPs)
scaffold0414 (13-155)||(6084-6227)
[»] chr3 (4 HSPs)
chr3 (165-292)||(22142020-22142147)
chr3 (28-140)||(25766442-25766554)
chr3 (26-156)||(22141827-22141957)
chr3 (52-156)||(18140547-18140651)
[»] scaffold0176 (1 HSPs)
scaffold0176 (12-155)||(10221-10365)
[»] scaffold0028 (1 HSPs)
scaffold0028 (52-156)||(4575-4679)
[»] scaffold0607 (1 HSPs)
scaffold0607 (17-155)||(7881-8020)
[»] chr6 (2 HSPs)
chr6 (49-140)||(16878338-16878429)
chr6 (199-364)||(22803382-22803547)
[»] chr5 (2 HSPs)
chr5 (199-292)||(26743709-26743802)
chr5 (313-393)||(26743851-26743931)
[»] scaffold1948 (1 HSPs)
scaffold1948 (52-156)||(486-590)
[»] chr1 (2 HSPs)
chr1 (30-156)||(29216719-29216842)
chr1 (58-156)||(22463700-22463798)
[»] scaffold0227 (1 HSPs)
scaffold0227 (199-364)||(25230-25395)
[»] chr4 (1 HSPs)
chr4 (199-393)||(13574803-13574997)
[»] scaffold1260 (1 HSPs)
scaffold1260 (55-95)||(1800-1840)
[»] scaffold0435 (1 HSPs)
scaffold0435 (52-96)||(4339-4383)
[»] scaffold0334 (1 HSPs)
scaffold0334 (52-96)||(10750-10794)


Alignment Details
Target: chr7 (Bit Score: 357; Significance: 0; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 13 - 393
Target Start/End: Complemental strand, 2264642 - 2264262
Alignment:
Q  13 taaacaacttaggaaataaaactaaacaagctaattaatgtgtgcaactagggttgggcttgtctttgtatcatttccatcatccattgcatcattttct 112  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  2264642 taaacaacttaggaaataaaactaaacaagctaattaatgtgtgtaacttgggttgggcttgtctttgtatcatttccatcatccgttgcatcattttct 2264543  T
Q  113 gagtttcatctgcctttctgttcatttccttcttgaattcttcagttgagttcttgtattccagcaataaaagcttatgctataacacttccttcctaag 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  2264542 gagtttcatctgcctttctgttcatttccttcttgaattcttcagttgagttcttgtattccagcaataaaagcttatgctctaacacttccttcctaag 2264443  T
Q  213 cttcttgttctcagcctcaagttctgcgttcctttgcagcagggctagctcagaagatgcagactgtacattaatcttctgcagaaaagccagattcaga 312  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2264442 cttcttgttcttagcctcaagttctgcgttcctttgcagcagggctagctcagaagatgcagactgtacattaatcttctgcagaaaagccagattcaga 2264343  T
Q  313 tccttagggtgcactcatgtaggaatgaagtctgtagcattcctttctcttatggatagtggactctgcacacaggttctg 393  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  2264342 tccttagggtgcactcatgtaggaatgaagtctgtagcattcctttctcttatggatagtggactctgcacccaggttctg 2264262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 197 - 364
Target Start/End: Complemental strand, 16555976 - 16555809
Alignment:
Q  197 acacttccttcctaagcttcttgttctcagcctcaagttctgcgttcctttgcagcagggctagctcagaagatgcagactgtacattaatcttctgcag 296  Q
    |||||||||| ||||||||||| |||||||||||||  ||| | || |||||||||| |||||| ||||||||||||||||||||||| ||  |||||||    
T  16555976 acacttcctttctaagcttcttattctcagcctcaatctctacatttctttgcagcaaggctagttcagaagatgcagactgtacattgattctctgcag 16555877  T
Q  297 aaaagccagattcagatccttagggtgcactcatgtaggaatgaagtctgtagcattcctttctctta 364  Q
     || | |||||  || |||||||| |||||  ||||||||||||||||||| ||||||||||||||||    
T  16555876 gaaggtcagatctagttccttaggatgcacaaatgtaggaatgaagtctgtggcattcctttctctta 16555809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 197 - 364
Target Start/End: Original strand, 16609686 - 16609853
Alignment:
Q  197 acacttccttcctaagcttcttgttctcagcctcaagttctgcgttcctttgcagcagggctagctcagaagatgcagactgtacattaatcttctgcag 296  Q
    |||||||||| ||||||||||| |||||||||||||  ||| | || |||||||||| |||||| ||||||||||||||||||||||| ||  |||||||    
T  16609686 acacttcctttctaagcttcttattctcagcctcaatctctacatttctttgcagcaaggctagttcagaagatgcagactgtacattgattctctgcag 16609785  T
Q  297 aaaagccagattcagatccttagggtgcactcatgtaggaatgaagtctgtagcattcctttctctta 364  Q
     || | |||||  || |||||||| |||||  ||||||||||||||||||| ||||||||||||||||    
T  16609786 gaaggtcagatctagttccttaggatgcacaaatgtaggaatgaagtctgtggcattcctttctctta 16609853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 28 - 154
Target Start/End: Original strand, 14124201 - 14124326
Alignment:
Q  28 ataaaactaaacaagctaattaatgtgtgcaactagggttgggcttgtctttgtatcatttccatcatccattgcatcattttctgagtttcatctgcct 127  Q
    ||||||||||||||||||| || ||||||||||||||||||| |||||||||| ||||| ||||||||   |||||||||| | ||||||||||||||||    
T  14124201 ataaaactaaacaagctaaata-tgtgtgcaactagggttggacttgtctttgaatcatctccatcatttgttgcatcattctttgagtttcatctgcct 14124299  T
Q  128 ttctgttcatttccttcttgaattctt 154  Q
    || ||||||| || | |||||| ||||    
T  14124300 ttttgttcatctcttgcttgaactctt 14124326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 28 - 154
Target Start/End: Original strand, 14427597 - 14427722
Alignment:
Q  28 ataaaactaaacaagctaattaatgtgtgcaactagggttgggcttgtctttgtatcatttccatcatccattgcatcattttctgagtttcatctgcct 127  Q
    ||||||||||||||||||| || ||||||||||||||||||| |||||||||| ||||| ||||||||   |||||||||| | ||||||||||||||||    
T  14427597 ataaaactaaacaagctaaata-tgtgtgcaactagggttggacttgtctttgaatcatctccatcatttgttgcatcattctttgagtttcatctgcct 14427695  T
Q  128 ttctgttcatttccttcttgaattctt 154  Q
    || ||||||| || | |||||| ||||    
T  14427696 ttttgttcatctcttgcttgaactctt 14427722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 52 - 135
Target Start/End: Complemental strand, 12173414 - 12173331
Alignment:
Q  52 gtgtgcaactagggttgggcttgtctttgtatcatttccatcatccattgcatcattttctgagtttcatctgcctttctgttc 135  Q
    ||||||||||| ||||| ||||||||||| ||||| |||||||||  |||||||||| ||| ||||||||||||||||||||||    
T  12173414 gtgtgcaactaaggttgcgcttgtctttgaatcatctccatcatctgttgcatcattctctcagtttcatctgcctttctgttc 12173331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 28 - 156
Target Start/End: Complemental strand, 48236318 - 48236194
Alignment:
Q  28 ataaaactaaacaagctaattaatgtgtgcaactagggttgggcttgtctttgtatcatttccatcatccattgcatcattttctgagtttcatctgcct 127  Q
    ||||||||||||||||||||    |||||||| ||||||||||||||| |||| ||||| ||||||||   |||||||||| | || |||||||||||||    
T  48236318 ataaaactaaacaagctaat----gtgtgcaagtagggttgggcttgtttttggatcatctccatcatttgttgcatcattctttgtgtttcatctgcct 48236223  T
Q  128 ttctgttcatttccttcttgaattcttca 156  Q
    |||| ||||| || | |||||| ||||||    
T  48236222 ttctattcatctcttgcttgaactcttca 48236194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 199 - 296
Target Start/End: Original strand, 14124425 - 14124522
Alignment:
Q  199 acttccttcctaagcttcttgttctcagcctcaagttctgcgttcctttgcagcagggctagctcagaagatgcagactgtacattaatcttctgcag 296  Q
    |||||||| || | |||||| |||| ||||||||||||||| || ||||||| ||| ||||| ||| ||||||||||||  ||||| ||||| |||||    
T  14124425 acttcctttcttaacttcttattcttagcctcaagttctgcatttctttgcatcagagctagttcaaaagatgcagacttgacattgatcttatgcag 14124522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 199 - 296
Target Start/End: Original strand, 14427821 - 14427918
Alignment:
Q  199 acttccttcctaagcttcttgttctcagcctcaagttctgcgttcctttgcagcagggctagctcagaagatgcagactgtacattaatcttctgcag 296  Q
    |||||||| || | |||||| |||| ||||||||||||||| || ||||||| ||| ||||| ||| ||||||||||||  ||||| ||||| |||||    
T  14427821 acttcctttcttaacttcttattcttagcctcaagttctgcatttctttgcatcagagctagttcaaaagatgcagacttgacattgatcttatgcag 14427918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 199 - 393
Target Start/End: Complemental strand, 9708730 - 9708536
Alignment:
Q  199 acttccttcctaagcttcttgttctcagcctcaagttctgcgttcctttgcagcagggctagctcagaagatgcagactgtacattaatcttctgcagaa 298  Q
    ||||||||||| ||||||||||| ||    ||||| ||| | ||||||||||  ||  |||| |||||||| |||||||  |  || |||||| ||||||    
T  9708730 acttccttccttagcttcttgttttctaattcaagctctacattcctttgcatgagttctagttcagaagaggcagacttgaagttgatcttccgcagaa 9708631  T
Q  299 aagccagattcagatccttagggtgcactcatgtaggaatgaagtctgtagcattcctttctcttatggatagtggactctgcacacaggttctg 393  Q
    | | || ||| |  ||||| || ||||| |  ||||||||||| |||||||||||||||||||||| | |||| ||| | ||||| || ||||||    
T  9708630 aggtcaaatttaattccttgggatgcacaccagtaggaatgaaatctgtagcattcctttctcttaggcatagaggattttgcacccaagttctg 9708536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 333 - 393
Target Start/End: Original strand, 14124521 - 14124581
Alignment:
Q  333 aggaatgaagtctgtagcattcctttctcttatggatagtggactctgcacacaggttctg 393  Q
    ||||||||||||||| |||||||||||||||| |   |||||| ||||||| |||||||||    
T  14124521 aggaatgaagtctgtggcattcctttctcttaagatcagtggattctgcacccaggttctg 14124581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 333 - 393
Target Start/End: Original strand, 14427917 - 14427977
Alignment:
Q  333 aggaatgaagtctgtagcattcctttctcttatggatagtggactctgcacacaggttctg 393  Q
    ||||||||||||||| |||||||||||||||| |   |||||| ||||||| |||||||||    
T  14427917 aggaatgaagtctgtggcattcctttctcttaagatcagtggattctgcacccaggttctg 14427977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 29 - 112
Target Start/End: Complemental strand, 4428181 - 4428098
Alignment:
Q  29 taaaactaaacaagctaattaatgtgtgcaactagggttgggcttgtctttgtatcatttccatcatccattgcatcattttct 112  Q
    |||| ||||||||||| |   |||||||| |||| |||||||||||| |||| ||||| ||||||||   ||||||||||||||    
T  4428181 taaatctaaacaagcttaaatatgtgtgctactaaggttgggcttgtttttggatcatctccatcatttgttgcatcattttct 4428098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 52 - 96
Target Start/End: Complemental strand, 13031196 - 13031152
Alignment:
Q  52 gtgtgcaactagggttgggcttgtctttgtatcatttccatcatc 96  Q
    ||||||||||| |||||||||||| |||| | |||||||||||||    
T  13031196 gtgtgcaactaaggttgggcttgtttttggaacatttccatcatc 13031152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 52 - 96
Target Start/End: Complemental strand, 13137043 - 13136999
Alignment:
Q  52 gtgtgcaactagggttgggcttgtctttgtatcatttccatcatc 96  Q
    ||||||||||| ||||||||||||||||| | ||| |||||||||    
T  13137043 gtgtgcaactaaggttgggcttgtctttggaacatctccatcatc 13136999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 101; Significance: 6e-50; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 198 - 366
Target Start/End: Complemental strand, 15334927 - 15334759
Alignment:
Q  198 cacttccttcctaagcttcttgttctcagcctcaagttctgcgttcctttgcagcagggctagctcagaagatgcagactgtacattaatcttctgcaga 297  Q
    ||||||||| |||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| |||| ||| || | ||||||| |||||||     
T  15334927 cacttcctttctaagcttcttgatttcagcctcaagttctgcgttcctttgcagcagggctagctcagaggatgtagaatgaaaattaatcctctgcagg 15334828  T
Q  298 aaagccagattcagatccttagggtgcactcatgtaggaatgaagtctgtagcattcctttctcttatg 366  Q
    || | |||||| || |||||||||||||||| |||||||||||||| ||| ||||||||||||||||||    
T  15334827 aaggtcagattgagttccttagggtgcactcctgtaggaatgaagtatgtggcattcctttctcttatg 15334759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 198 - 366
Target Start/End: Complemental strand, 15423990 - 15423822
Alignment:
Q  198 cacttccttcctaagcttcttgttctcagcctcaagttctgcgttcctttgcagcagggctagctcagaagatgcagactgtacattaatcttctgcaga 297  Q
    ||||||||| |||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| |||| ||| || | ||||||| |||||||     
T  15423990 cacttcctttctaagcttcttgatttcagcctcaagttctgcgttcctttgcagcagggctagctcagaggatgtagaatgaaaattaatcctctgcagg 15423891  T
Q  298 aaagccagattcagatccttagggtgcactcatgtaggaatgaagtctgtagcattcctttctcttatg 366  Q
    || | |||||| || |||||||||||||||| |||||||||||||| ||| ||||||||||||||||||    
T  15423890 aaggtcagattgagttccttagggtgcactcctgtaggaatgaagtatgtggcattcctttctcttatg 15423822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 198 - 366
Target Start/End: Complemental strand, 15515296 - 15515128
Alignment:
Q  198 cacttccttcctaagcttcttgttctcagcctcaagttctgcgttcctttgcagcagggctagctcagaagatgcagactgtacattaatcttctgcaga 297  Q
    ||||||||| |||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| |||| ||| || | ||||||| |||||||     
T  15515296 cacttcctttctaagcttcttgatttcagcctcaagttctgcgttcctttgcagcagggctagctcagaggatgtagaatgaaaattaatcctctgcagg 15515197  T
Q  298 aaagccagattcagatccttagggtgcactcatgtaggaatgaagtctgtagcattcctttctcttatg 366  Q
    || | |||||| || |||||||||||||||| |||||||||||||| ||| ||||||||||||||||||    
T  15515196 aaggtcagattgagttccttagggtgcactcctgtaggaatgaagtatgtggcattcctttctcttatg 15515128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 31 - 140
Target Start/End: Complemental strand, 3597429 - 3597320
Alignment:
Q  31 aaactaaacaagctaatta-atgtgtgcaactagggttgggcttgtctttgtatcatttccatcatccattgcatcattttctgagtttcatctgccttt 129  Q
    ||||||||||||||||  | |||||||||||||||||||  |||||||||| ||||||||||||||| ||||||||||| ||||||||||||||||||||    
T  3597429 aaactaaacaagctaaaaatatgtgtgcaactagggttga-cttgtctttgaatcatttccatcatctattgcatcattctctgagtttcatctgccttt 3597331  T
Q  130 ctgttcatttc 140  Q
    |||||||||||    
T  3597330 ctgttcatttc 3597320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 28 - 156
Target Start/End: Complemental strand, 15335150 - 15335023
Alignment:
Q  28 ataaaactaaacaagctaattaatgtgtgcaactagggttgggcttgtctttgtatcatttccatcatccattgcatcattttctgagtttcatctgcct 127  Q
    ||||||||||||||||||| || ||||||| |||||||||||||||||||||| ||||| |||||||||  ||||||||| || ||||||||||||||||    
T  15335150 ataaaactaaacaagctaaata-tgtgtgccactagggttgggcttgtctttgaatcatctccatcatctgttgcatcatcttttgagtttcatctgcct 15335052  T
Q  128 ttctgttcatttccttcttgaattcttca 156  Q
    |  |||||||||| | |||||| ||||||    
T  15335051 tcttgttcatttcttgcttgaactcttca 15335023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 28 - 156
Target Start/End: Complemental strand, 15424213 - 15424086
Alignment:
Q  28 ataaaactaaacaagctaattaatgtgtgcaactagggttgggcttgtctttgtatcatttccatcatccattgcatcattttctgagtttcatctgcct 127  Q
    ||||||||||||||||||| || ||||||| |||||||||||||||||||||| ||||| |||||||||  ||||||||| || ||||||||||||||||    
T  15424213 ataaaactaaacaagctaaata-tgtgtgccactagggttgggcttgtctttgaatcatctccatcatctgttgcatcatcttttgagtttcatctgcct 15424115  T
Q  128 ttctgttcatttccttcttgaattcttca 156  Q
    |  |||||||||| | |||||| ||||||    
T  15424114 tcttgttcatttcttgcttgaactcttca 15424086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 28 - 156
Target Start/End: Complemental strand, 15515519 - 15515392
Alignment:
Q  28 ataaaactaaacaagctaattaatgtgtgcaactagggttgggcttgtctttgtatcatttccatcatccattgcatcattttctgagtttcatctgcct 127  Q
    ||||||||||||||||||| || ||||||| |||||||||||||||||||||| ||||| |||||||||  ||||||||| || ||||||||||||||||    
T  15515519 ataaaactaaacaagctaaata-tgtgtgccactagggttgggcttgtctttgaatcatctccatcatctgttgcatcatcttttgagtttcatctgcct 15515421  T
Q  128 ttctgttcatttccttcttgaattcttca 156  Q
    |  |||||||||| | |||||| ||||||    
T  15515420 tcttgttcatttcttgcttgaactcttca 15515392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 52 - 140
Target Start/End: Original strand, 19928098 - 19928186
Alignment:
Q  52 gtgtgcaactagggttgggcttgtctttgtatcatttccatcatccattgcatcattttctgagtttcatctgcctttctgttcatttc 140  Q
    ||||||||||| ||||||| ||||||||| ||||| | |||||||  |||||||||| |||||||||||||| ||||||||||||||||    
T  19928098 gtgtgcaactaaggttgggattgtctttgaatcatattcatcatctgttgcatcattctctgagtttcatctacctttctgttcatttc 19928186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 13 - 154
Target Start/End: Original strand, 22664142 - 22664287
Alignment:
Q  13 taaacaacttaggaaataaaactaaacaagct--aattaat--gtgtgcaactagggttgggcttgtctttgtatcatttccatcatccattgcatcatt 108  Q
    |||||||||||| | |||||||||||||||||  ||  |||  ||||||||||| ||||| |||||| |||| ||||| ||||||||  |||||||||||    
T  22664142 taaacaacttagaagataaaactaaacaagcttaaaaaaataggtgtgcaactaaggttgagcttgtttttgaatcatctccatcatatattgcatcatt 22664241  T
Q  109 ttctgagtttcatctgcctttctgttcatttccttcttgaattctt 154  Q
     | || ||||||||||||||||||||||| || | ||| |||||||    
T  22664242 ctttgggtttcatctgcctttctgttcatctcttgcttaaattctt 22664287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 331 - 392
Target Start/End: Complemental strand, 20381206 - 20381145
Alignment:
Q  331 gtaggaatgaagtctgtagcattcctttctcttatggatagtggactctgcacacaggttct 392  Q
    ||||||||||| || ||||||||||||||||||| | |||| ||||| ||||| || |||||    
T  20381206 gtaggaatgaaatcagtagcattcctttctcttaagcatagaggactttgcacccaagttct 20381145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 80; Significance: 2e-37; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 198 - 393
Target Start/End: Complemental strand, 28710696 - 28710501
Alignment:
Q  198 cacttccttcctaagcttcttgttctcagcctcaagttctgcgttcctttgcagcagggctagctcagaagatgcagactgtacattaatcttctgcaga 297  Q
    ||||||||| || ||||| || |||||| ||| |||||||||||||||||||||||||||||| ||||||||||||||| ||||||| ||  ||||||      
T  28710696 cacttcctttctgagctttttattctcaaccttaagttctgcgttcctttgcagcagggctagttcagaagatgcagacagtacattgattctctgcaag 28710597  T
Q  298 aaagccagattcagatccttagggtgcactcatgtaggaatgaagtctgtagcattcctttctcttatggatagtggactctgcacacaggttctg 393  Q
    || | |||||  || ||| |||| ||||| | |||||||||||||| ||| |||||||||||||||| |   |||||||||||||| |||||||||    
T  28710596 aaggtcagatcaagctccctaggatgcacacctgtaggaatgaagtatgtggcattcctttctcttaggctcagtggactctgcacccaggttctg 28710501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 14 - 137
Target Start/End: Complemental strand, 28710923 - 28710801
Alignment:
Q  14 aaacaacttaggaaataaaactaaacaagctaattaatgtgtgcaactagggttgggcttgtctttgtatcatttccatcatccattgcatcattttctg 113  Q
    |||||||||| || ||||||||||||||||||| || |||||| |||||||||||||||| |||||| ||||| | ||||||   ||||||||| || ||    
T  28710923 aaacaacttaagagataaaactaaacaagctaaata-tgtgtgaaactagggttgggcttatctttgaatcatcttcatcatttcttgcatcatcttatg 28710825  T
Q  114 agtttcatctgcctttctgttcat 137  Q
    ||||||||||||||||||||||||    
T  28710824 agtttcatctgcctttctgttcat 28710801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0414 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: scaffold0414
Description:

Target: scaffold0414; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 13 - 155
Target Start/End: Complemental strand, 6227 - 6084
Alignment:
Q  13 taaacaacttaggaaataaaactaaacaagctaatta-atgtgtgcaactagggttgggcttgtctttgtatcatttccatcatccattgcatcattttc 111  Q
    |||||| ||||| ||||||||||||||||||| |  | | ||||||||||| ||||||||||||||||| ||||||||||||||   |||||||||| |     
T  6227 taaacatcttagaaaataaaactaaacaagcttaaaataggtgtgcaactaaggttgggcttgtctttgaatcatttccatcatattttgcatcattctt 6128  T
Q  112 tgagtttcatctgcctttctgttcatttccttcttgaattcttc 155  Q
    |||||||||||||||||||||||||| || | ||| ||||||||    
T  6127 tgagtttcatctgcctttctgttcatctcttgcttaaattcttc 6084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 64; Significance: 7e-28; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 165 - 292
Target Start/End: Original strand, 22142020 - 22142147
Alignment:
Q  165 cttgtattccagcaataaaagcttatgctataacacttccttcctaagcttcttgttctcagcctcaagttctgcgttcctttgcagcagggctagctca 264  Q
    |||||||||||  || || ||||| || | || |||||||||||| ||||| ||||||||||||||||| || || ||||||||||||||||||||||||    
T  22142020 cttgtattccaataacaagagcttctgttctagcacttccttcctgagctttttgttctcagcctcaagctcagcattcctttgcagcagggctagctca 22142119  T
Q  265 gaagatgcagactgtacattaatcttct 292  Q
    || |||||||| || |||||||||||||    
T  22142120 gaggatgcagattgaacattaatcttct 22142147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 28 - 140
Target Start/End: Original strand, 25766442 - 25766554
Alignment:
Q  28 ataaaactaaacaagctaattaatgtgtgcaactagggttgggcttgtctttgtatcatttccatcatccattgcatcattttctgagtttcatctgcct 127  Q
    ||||||||||||||||| |   | ||||||||||| ||||||||||||||||| ||||| |||||||||  |||||||||| |||||||||||| |||||    
T  25766442 ataaaactaaacaagcttaaataggtgtgcaactaaggttgggcttgtctttgaatcatctccatcatctgttgcatcattctctgagtttcatatgcct 25766541  T
Q  128 ttctgttcatttc 140  Q
    |||| ||||||||    
T  25766542 ttctattcatttc 25766554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 26 - 156
Target Start/End: Original strand, 22141827 - 22141957
Alignment:
Q  26 aaataaaactaaacaagctaattaatgtgtgcaactagggttgggcttgtctttgtatcatttccatcatccattgcatcattttctgagtttcatctgc 125  Q
    ||||||||| |||||||||||   | ||||||||||| |||||| ||||| |||| |||| ||||||||||  |||||||||  | ||||||||||||||    
T  22141827 aaataaaacaaaacaagctaaaataggtgtgcaactaaggttggacttgtttttgaatcagttccatcatctgttgcatcatcctttgagtttcatctgc 22141926  T
Q  126 ctttctgttcatttccttcttgaattcttca 156  Q
     |||||||| ||||| | |||||| ||||||    
T  22141927 ttttctgttaatttcttgcttgaactcttca 22141957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 52 - 156
Target Start/End: Complemental strand, 18140651 - 18140547
Alignment:
Q  52 gtgtgcaactagggttgggcttgtctttgtatcatttccatcatccattgcatcattttctgagtttcatctgcctttctgttcatttccttcttgaatt 151  Q
    ||||||||||| |||||||||||| |||  ||||| ||||||||   || ||||||| |||| ||||||||||| |||   |||||||| | |||||| |    
T  18140651 gtgtgcaactaaggttgggcttgtttttagatcatctccatcatttgtttcatcattctctgtgtttcatctgctttttcattcatttcttgcttgaagt 18140552  T
Q  152 cttca 156  Q
    |||||    
T  18140551 cttca 18140547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0176 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 12 - 155
Target Start/End: Original strand, 10221 - 10365
Alignment:
Q  12 ataaacaacttaggaaataaaactaaacaagctaatta-atgtgtgcaactagggttgggcttgtctttgtatcatttccatcatccattgcatcatttt 110  Q
    ||||| |||||| ||||||| ||| ||||||||||  | |||||||||||||  |||||||||||||||| ||||||| ||||||   |||||||||| |    
T  10221 ataaaaaacttaagaaataacactgaacaagctaaaaatatgtgtgcaactaaagttgggcttgtctttgaatcattttcatcatatgttgcatcattct 10320  T
Q  111 ctgagtttcatctgcctttctgttcatttccttcttgaattcttc 155  Q
     |||||||||||||||||| |||||||||| | ||| ||||||||    
T  10321 ttgagtttcatctgcctttttgttcatttcttgcttaaattcttc 10365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 52 - 156
Target Start/End: Complemental strand, 4679 - 4575
Alignment:
Q  52 gtgtgcaactagggttgggcttgtctttgtatcatttccatcatccattgcatcattttctgagtttcatctgcctttctgttcatttccttcttgaatt 151  Q
    ||||||||||| |||| |||||||||||| ||||| | |||||||  |||||||||| ||| ||||||||||||||||||||||||||| | ||| ||||    
T  4679 gtgtgcaactaaggttaggcttgtctttgaatcatattcatcatctgttgcatcattctctaagtttcatctgcctttctgttcatttcttgcttaaatt 4580  T
Q  152 cttca 156  Q
    |||||    
T  4579 cttca 4575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0607 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0607
Description:

Target: scaffold0607; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 17 - 155
Target Start/End: Original strand, 7881 - 8020
Alignment:
Q  17 caacttaggaaataaaactaaacaagctaatta-atgtgtgcaactagggttgggcttgtctttgtatcatttccatcatccattgcatcattttctgag 115  Q
    |||||||||||||||||||||||||||| |  | | ||||||||||| |||||| ||||| |||| ||||| ||||| ||   |||||||||| | || |    
T  7881 caacttaggaaataaaactaaacaagcttaaaataggtgtgcaactaaggttggacttgtttttgaatcatctccataatgtgttgcatcattctttggg 7980  T
Q  116 tttcatctgcctttctgttcatttccttcttgaattcttc 155  Q
    |||||| ||||||||||||||| || | ||||||||||||    
T  7981 tttcatatgcctttctgttcatctcttgcttgaattcttc 8020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 49 - 140
Target Start/End: Original strand, 16878338 - 16878429
Alignment:
Q  49 aatgtgtgcaactagggttgggcttgtctttgtatcatttccatcatccattgcatcattttctgagtttcatctgcctttctgttcatttc 140  Q
    ||||||||||| |||||||| | ||||||||| ||||| |||||| ||  ||||||||| ||||||||||||||||||||| ||||||||||    
T  16878338 aatgtgtgcaattagggttgagtttgtctttgaatcatctccatcctctgttgcatcatcttctgagtttcatctgcctttatgttcatttc 16878429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 199 - 364
Target Start/End: Original strand, 22803382 - 22803547
Alignment:
Q  199 acttccttcctaagcttcttgttctcagcctcaagttctgcgttcctttgcagcagggctagctcagaagatgcagactgtacattaatcttctgcagaa 298  Q
    ||||||||||| ||||||||||| || |  ||||| ||||| ||||||||||  ||   ||| | |||||| | |||||  |  || |||||||||||||    
T  22803382 acttccttccttagcttcttgttttctgattcaagctctgcattcctttgcatgagttttagtttagaagaggaagacttgaagttgatcttctgcagaa 22803481  T
Q  299 aagccagattcagatccttagggtgcactcatgtaggaatgaagtctgtagcattcctttctctta 364  Q
    | | || ||  |  |||||||| ||||| |  ||||||||||| ||||||||||||||||||||||    
T  22803482 aggtcaaatctaattccttaggatgcacaccagtaggaatgaaatctgtagcattcctttctctta 22803547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 199 - 292
Target Start/End: Original strand, 26743709 - 26743802
Alignment:
Q  199 acttccttcctaagcttcttgttctcagcctcaagttctgcgttcctttgcagcagggctagctcagaagatgcagactgtacattaatcttct 292  Q
    ||||||||||| |||||||| |||||| ||| ||||||||| |||||||||| ||  ||||| ||||||||||||||||  ||||| |||||||    
T  26743709 acttccttccttagcttcttattctcaaccttaagttctgcattcctttgcaacatagctagttcagaagatgcagacttgacatttatcttct 26743802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 313 - 393
Target Start/End: Original strand, 26743851 - 26743931
Alignment:
Q  313 tccttagggtgcactcatgtaggaatgaagtctgtagcattcctttctcttatggatagtggactctgcacacaggttctg 393  Q
    |||||||| ||||| | |||||||||||||| ||| |||||||||||||||| |  ||||| | ||||||| || ||||||    
T  26743851 tccttaggatgcacacctgtaggaatgaagtatgtggcattcctttctcttaagcttagtgaattctgcacccaagttctg 26743931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1948 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold1948
Description:

Target: scaffold1948; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 52 - 156
Target Start/End: Original strand, 486 - 590
Alignment:
Q  52 gtgtgcaactagggttgggcttgtctttgtatcatttccatcatccattgcatcattttctgagtttcatctgcctttctgttcatttccttcttgaatt 151  Q
    ||||||||||| |||| |||||||||||| ||||| | |||||||   |||| |||| | |||||||||||| |||||||||||||||| | ||| ||||    
T  486 gtgtgcaactaaggttaggcttgtctttgaatcatattcatcatctgctgcaccattctttgagtttcatctacctttctgttcatttcttgcttaaatt 585  T
Q  152 cttca 156  Q
    |||||    
T  586 cttca 590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 30 - 156
Target Start/End: Original strand, 29216719 - 29216842
Alignment:
Q  30 aaaactaaacaagctaattaatgtgtgcaactagggttgggcttgtctttgtatcatttccatcatccattgcatcattttctgagtttcatctgccttt 129  Q
    |||||||||||||||||| |   |||||||||| |||||||||||| |||| ||||| ||||||||   || ||||| | |||| ||||||||||| |||    
T  29216719 aaaactaaacaagctaatga---tgtgcaactaaggttgggcttgtttttggatcatctccatcatttgtttcatcactctctgtgtttcatctgctttt 29216815  T
Q  130 ctgttcatttccttcttgaattcttca 156  Q
     | |||||||  | |||||||||||||    
T  29216816 ttattcatttgttgcttgaattcttca 29216842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 58 - 156
Target Start/End: Complemental strand, 22463798 - 22463700
Alignment:
Q  58 aactagggttgggcttgtctttgtatcatttccatcatccattgcatcattttctgagtttcatctgcctttctgttcatttccttcttgaattcttca 156  Q
    ||||| |||||||||||| |||| ||||| ||||||||   || ||||||| | || |||||||||||  |||| |||||||| | |||||||||||||    
T  22463798 aactaaggttgggcttgtttttggatcatctccatcatttgtttcatcattctttgtgtttcatctgctcttctattcatttcttgcttgaattcttca 22463700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0227 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0227
Description:

Target: scaffold0227; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 199 - 364
Target Start/End: Original strand, 25230 - 25395
Alignment:
Q  199 acttccttcctaagcttcttgttctcagcctcaagttctgcgttcctttgcagcagggctagctcagaagatgcagactgtacattaatcttctgcagaa 298  Q
    ||||||||||||||||||||||| ||    ||||||||||| |||||||||| |||  |||| ||| |||| |||||||  |   | ||||||||||| |    
T  25230 acttccttcctaagcttcttgttttccttttcaagttctgcattcctttgcatcagttctagttcaaaagaggcagacttgaaggttatcttctgcagga 25329  T
Q  299 aagccagattcagatccttagggtgcactcatgtaggaatgaagtctgtagcattcctttctctta 364  Q
    | |  | || ||| ||||| || ||||| |  ||||||||||| ||||||||||||||||| ||||    
T  25330 aggttaaatccagctccttgggatgcacaccagtaggaatgaaatctgtagcattcctttccctta 25395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 199 - 393
Target Start/End: Complemental strand, 13574997 - 13574803
Alignment:
Q  199 acttccttcctaagcttcttgttctcagcctcaagttctgcgttcctttgcagcagggctagctcagaagatgcagactgtacattaatcttctgcagaa 298  Q
    ||||||||||| ||||||||||| ||    ||||| ||| | ||||||||||  ||  |||| |||||||| |||||||  |  || |||||| ||||||    
T  13574997 acttccttccttagcttcttgttttctaattcaagctctacattcctttgcatgagttctagttcagaagaggcagacttgaagttgatcttccgcagaa 13574898  T
Q  299 aagccagattcagatccttagggtgcactcatgtaggaatgaagtctgtagcattcctttctcttatggatagtggactctgcacacaggttctg 393  Q
    | | || ||| |  ||||| || ||||| |  ||||||||||| |||||||||||||||||||||| | |||| ||| | ||||| || ||||||    
T  13574897 aggtcaaatttaattccttgggatgcacaccagtaggaatgaaatctgtagcattcctttctcttaggcatagaggattttgcacccaagttctg 13574803  T

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Target: scaffold1260 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold1260
Description:

Target: scaffold1260; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 55 - 95
Target Start/End: Complemental strand, 1840 - 1800
Alignment:
Q  55 tgcaactagggttgggcttgtctttgtatcatttccatcat 95  Q
    |||||||| ||||||||||||||||| ||||| ||||||||    
T  1840 tgcaactaaggttgggcttgtctttgaatcatctccatcat 1800  T

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Target: scaffold0435 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0435
Description:

Target: scaffold0435; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 52 - 96
Target Start/End: Complemental strand, 4383 - 4339
Alignment:
Q  52 gtgtgcaactagggttgggcttgtctttgtatcatttccatcatc 96  Q
    ||||||||||| ||||||||||||||||| | ||| |||||||||    
T  4383 gtgtgcaactaaggttgggcttgtctttggaacatctccatcatc 4339  T

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Target: scaffold0334 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0334
Description:

Target: scaffold0334; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 52 - 96
Target Start/End: Original strand, 10750 - 10794
Alignment:
Q  52 gtgtgcaactagggttgggcttgtctttgtatcatttccatcatc 96  Q
    ||||||||||| |||||||||||| |||| | |||||||||||||    
T  10750 gtgtgcaactaaggttgggcttgtttttgaaacatttccatcatc 10794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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