View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6922_low_9 (Length: 360)
Name: NF6922_low_9
Description: NF6922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6922_low_9 |
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| [»] chr5 (6 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 294; Significance: 1e-165; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 7 - 360
Target Start/End: Original strand, 19590005 - 19590358
Alignment:
| Q |
7 |
actaactcactaacggttttattgatagttagttagtttaccggttgtataactgaataacggctcactaacaataacaagctgaataattagattactg |
106 |
Q |
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| T |
19590005 |
actaactcactaacggttttattgatagttaattagtttaccggttgtataactgaataacgattcactaacaataacaagctgaataattggattactg |
19590104 |
T |
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| Q |
107 |
tcaaatttgcttatatacttttctttcatttgggataacgaacattgtatttgaagtaatattttgtgaagctaattcaaatcatctttcattgtaattc |
206 |
Q |
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| T |
19590105 |
tcaaatttgcttatatacttttctttcatttgggataacgaacattgtatttga--taatattttgtgaagctaattcaagtcatctttcattgtaattc |
19590202 |
T |
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| Q |
207 |
tgtagcaaaaattgatgctataaattactctattgtatatgccgaaaatgtaactaacaaaaatacagttagtaagtgac--atatatgcaactaactaa |
304 |
Q |
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| T |
19590203 |
tgcagcagaaattgatgctataaattactctattgtatatgcccaaaatgtaactaacaaaaatacagttagtaagtgacatatatatgcaactaactaa |
19590302 |
T |
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| Q |
305 |
ctaactaaaataccgttagtcagttagttgaagctctgacacactatataatcaaa |
360 |
Q |
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| T |
19590303 |
ctaactaaaataccgttagtcagtttattgaagctctgacacactatataatcaaa |
19590358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 31 - 232
Target Start/End: Complemental strand, 19583975 - 19583782
Alignment:
| Q |
31 |
atagttagttagtttaccggttgtataactgaataacggctcactaacaataacaagctgaataattagattactgtcaaatttgcttatatacttttct |
130 |
Q |
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| T |
19583975 |
atagttagtta-tttaccggctgtataactgaataacggttctctaacta------gctgaataatg-gattactgtcaaatttgcttatatacttttct |
19583884 |
T |
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| Q |
131 |
ttcatttgggataacgaacattgtatttgaagtaatattttgtgaagctaattcaaatcatctttcattgtaattctgtagcaaaaattgatgctataaa |
230 |
Q |
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| T |
19583883 |
atcatttgggtttatgaacaatgtatttgaaatgatattttgtgaagctaattgaaatcgtctttcattgtaattctgttgcagaagttgaaactataaa |
19583784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 285 - 348
Target Start/End: Complemental strand, 19583290 - 19583227
Alignment:
| Q |
285 |
acatatatgcaactaactaactaactaaaataccgttagtcagttagttgaagctctgacacac |
348 |
Q |
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| T |
19583290 |
acatatatgtaactaactaactaactaaaataccgttagtcagttaattgaagctctcacacac |
19583227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 108 - 195
Target Start/End: Original strand, 19791453 - 19791540
Alignment:
| Q |
108 |
caaatttgcttatatacttttctttcatttgggataacgaacattgtatttgaagtaatattttgtgaagctaattcaaatcatcttt |
195 |
Q |
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| T |
19791453 |
caaatttgattatatacttttctattatttgggtttacgaaaattgtatttgaagtaatatttggtgaagttaattgaagtcatcttt |
19791540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 7 - 69
Target Start/End: Original strand, 19791328 - 19791390
Alignment:
| Q |
7 |
actaactcactaacggttttattgatagttagttagtttaccggttgtataactgaataacgg |
69 |
Q |
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| T |
19791328 |
actaactgactaacggttttattgatagttggttatttaaccagttgcataaccgactaacgg |
19791390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 275 - 307
Target Start/End: Complemental strand, 19583344 - 19583312
Alignment:
| Q |
275 |
ttagtaagtgacatatatgcaactaactaacta |
307 |
Q |
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| T |
19583344 |
ttagtcagtgacatatatgcaactaactaacta |
19583312 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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