View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6923_high_2 (Length: 401)
Name: NF6923_high_2
Description: NF6923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6923_high_2 |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 286; Significance: 1e-160; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 45 - 392
Target Start/End: Original strand, 11084257 - 11084596
Alignment:
| Q |
45 |
aaagcctattagattagctgtaattttcttaagacaatgtccattatttatgtttaagggcataatgaacacatggaataataatgataacttcatctac |
144 |
Q |
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| T |
11084257 |
aaagcctattagattagctgtaattttcataggacaatgtccattatttatgtttaagggcataatgaacacatggaataataatgataacttcatctac |
11084356 |
T |
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| Q |
145 |
atgctcattttccaatttgataacaaatagaagaaagtgaaaaagtgaaaaacacataccataattcctttgaggttgataattgtcctattagcctttt |
244 |
Q |
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| T |
11084357 |
atgctcattttccaatttgataacaaatagaagaaag--------tgaaaaacacataccataattcctttgaggttgataattgtcctattagcctttt |
11084448 |
T |
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| Q |
245 |
tattatggtggagaatattgtgtgcaagttgaggaacataatgaccagcataactttctccagcaatgtagaaatctctattcttatattcaggaaatct |
344 |
Q |
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| T |
11084449 |
tattatggtggagaatattgtgtgcaagttgaggaacataatgaccagcataactttctccagcaatgtagaaatctctattcttatattcaggaaatct |
11084548 |
T |
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| Q |
345 |
ctctaaccaattcatcnnnnnnntatagttatctgcagctgttcttct |
392 |
Q |
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| T |
11084549 |
ctctaaccaattcatcaaaaaaatatagttatctgcagcagttcttct |
11084596 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 250 - 323
Target Start/End: Original strand, 35934657 - 35934730
Alignment:
| Q |
250 |
tggtggagaatattgtgtgcaagttgaggaacataatgaccagcataactttctccagcaatgtagaaatctct |
323 |
Q |
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| T |
35934657 |
tggtgaagaatagtggatgcaagttgaggaacataatgaccagcataactctctccagttatgtaaaaatctct |
35934730 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 267 - 347
Target Start/End: Original strand, 35910461 - 35910541
Alignment:
| Q |
267 |
tgcaagttgaggaacataatgaccagcataactttctccagcaatgtagaaatctctattcttatattcaggaaatctctc |
347 |
Q |
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| T |
35910461 |
tgcaagttgaggaacataatgaccagcataactctctccagttatgtaaaaatctctggttttgtattgtggaaatctctc |
35910541 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 267 - 323
Target Start/End: Original strand, 35927861 - 35927917
Alignment:
| Q |
267 |
tgcaagttgaggaacataatgaccagcataactttctccagcaatgtagaaatctct |
323 |
Q |
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| T |
35927861 |
tgcaagttgaggaacataatgaccagcataactctctccagctatgtaaaaagctct |
35927917 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 267 - 323
Target Start/End: Original strand, 35921268 - 35921324
Alignment:
| Q |
267 |
tgcaagttgaggaacataatgaccagcataactttctccagcaatgtagaaatctct |
323 |
Q |
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| T |
35921268 |
tgcaagttgaggaacataatgaccggcataactctctccagttatgtaaaaatctct |
35921324 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 267 - 323
Target Start/End: Original strand, 35940237 - 35940293
Alignment:
| Q |
267 |
tgcaagttgaggaacataatgaccagcataactttctccagcaatgtagaaatctct |
323 |
Q |
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| T |
35940237 |
tgcaagttgaggaacataatgaccagcataactctctccacttatgtaaaaatctct |
35940293 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 66; Significance: 5e-29; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 197 - 356
Target Start/End: Original strand, 316076 - 316232
Alignment:
| Q |
197 |
cacataccataattcctttgaggttgataattgtcctattagcctttttattatggtggagaatattgtgtgcaagttgaggaacataatgaccagcata |
296 |
Q |
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| T |
316076 |
cacataccaagattcctttgaggttgatgattgtc---tttgcctttttgttatgataaagaatggtatgtccaagttgaggaacataatgtccagcata |
316172 |
T |
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| Q |
297 |
actttctccagcaatgtagaaatctctattcttatattcaggaaatctctctaaccaatt |
356 |
Q |
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| T |
316173 |
actttctccagaaatatagaaatctctatttttatattctggaaacctttccaaccaatt |
316232 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 274 - 356
Target Start/End: Original strand, 6208831 - 6208913
Alignment:
| Q |
274 |
tgaggaacataatgaccagcataactttctccagcaatgtagaaatctctattcttatattcaggaaatctctctaaccaatt |
356 |
Q |
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| T |
6208831 |
tgaggaacataatggccagcataactttcaccagctatgaagaaatctcgagtcttatactgtggaaatctctcaagccaatt |
6208913 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 292 - 356
Target Start/End: Original strand, 42981286 - 42981350
Alignment:
| Q |
292 |
gcataactttctccagcaatgtagaaatctctattcttatattcaggaaatctctctaaccaatt |
356 |
Q |
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| T |
42981286 |
gcataactttccccagcgatgtagaattctctatgcttatattgaggaaatctttcaaaccaatt |
42981350 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 271 - 347
Target Start/End: Original strand, 6215695 - 6215771
Alignment:
| Q |
271 |
agttgaggaacataatgaccagcataactttctccagcaatgtagaaatctctattcttatattcaggaaatctctc |
347 |
Q |
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| T |
6215695 |
agttgagggacataatggccagcataactttcaccagttatgaagaaatctcgaatcttatactgtggaaatctctc |
6215771 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 274 - 356
Target Start/End: Original strand, 6178091 - 6178173
Alignment:
| Q |
274 |
tgaggaacataatgaccagcataactttctccagcaatgtagaaatctctattcttatattcaggaaatctctctaaccaatt |
356 |
Q |
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|||||||||||||| ||| |||||||||| ||||| || ||||||||| | ||||||| | ||||||||||| | |||||| |
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| T |
6178091 |
tgaggaacataatgtccaccataactttcaccagctataaagaaatctcgagtcttatactgtggaaatctctcaagccaatt |
6178173 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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