View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6923_low_10 (Length: 239)
Name: NF6923_low_10
Description: NF6923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6923_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 23010867 - 23011089
Alignment:
| Q |
1 |
tggagttttatgccaggaagaggagcgcggtgagaaaacggcttaatattgcttgtgcctttgaattttcgtatcgcctctatcttctttaccatttgct |
100 |
Q |
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| T |
23010867 |
tggagttttatgccaggaagaggagcgcggtgagaaaacggcttaatattgcttgtgcctttgaattttcgtatcgcctctatcttctttaccgtttgct |
23010966 |
T |
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| Q |
101 |
tgcataaacgatatcttttccaagttggacaccggccttgaaagcaactagtattttctctcatcctttgttccaaatcgtccacctcttccagtagatt |
200 |
Q |
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| T |
23010967 |
tgcataatcgatatcttttccaagttggacaccgcccttgaaagcaactagtattttctctcatcctttgttccaaatcgtccacctcttccagtagatt |
23011066 |
T |
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| Q |
201 |
attcacatcatctatccattttc |
223 |
Q |
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|||||||| |||||||||||||| |
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| T |
23011067 |
attcacattatctatccattttc |
23011089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 10 - 191
Target Start/End: Complemental strand, 21703538 - 21703357
Alignment:
| Q |
10 |
atgccaggaagaggagcgcggtgagaaaacggcttaatattgcttgtgcctttgaattttcgtatcgcctctatcttctttaccatttgcttgcataaac |
109 |
Q |
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||||| ||||||||||| ||||||||| || | |||||||||| | ||||| ||| || || |||| | |||||||||||||||||||| |||| |
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| T |
21703538 |
atgcctggaagaggagctaagtgagaaaatggttgaatattgctttttccttttaatctttccattgcctgtgccttctttaccatttgcttgctcaaac |
21703439 |
T |
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| Q |
110 |
gatatcttttccaagttggacaccggccttgaaagcaactagtattttctctcatcctttgttccaaatcgtccacctcttc |
191 |
Q |
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| T |
21703438 |
gatatcttctccatgttggaaaatctctttgaaagcacctggtgtttgttctcatcctttgtttcaatgcttccacctcttc |
21703357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 140 - 197
Target Start/End: Original strand, 21716104 - 21716161
Alignment:
| Q |
140 |
gaaagcaactagtattttctctcatcctttgttccaaatcgtccacctcttccagtag |
197 |
Q |
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|||||||||| || ||| |||||||||||||||| || || ||||||||||| ||||| |
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| T |
21716104 |
gaaagcaactggtgtttgctctcatcctttgttctaattcttccacctcttctagtag |
21716161 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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