View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6923_low_11 (Length: 223)
Name: NF6923_low_11
Description: NF6923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6923_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 143; Significance: 3e-75; HSPs: 10)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 39 - 206
Target Start/End: Complemental strand, 22831747 - 22831578
Alignment:
| Q |
39 |
atctcagatgataaggcaatttaagaaaccttgtcaagtgatgtttctttcagtaa--attcgtagctaggttcgaggatatttcttagtaggtcccaaa |
136 |
Q |
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| T |
22831747 |
atctcagatgataaggcaatttaagaaactttgtcaagtgatgtttctttcagtaataattcgtagctaggttccaggacatttcttagtaggtcccaaa |
22831648 |
T |
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| Q |
137 |
ttaggcatgcaatttttacttcactttggacaacatcttataaataataaacaccgaacagaactacaca |
206 |
Q |
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| T |
22831647 |
ttaggcatgcaatttttacttcactttggacaaaatcttataaataataaacaccgaacagaactacaca |
22831578 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 43 - 196
Target Start/End: Complemental strand, 22886210 - 22886060
Alignment:
| Q |
43 |
cagatgataaggcaatttaagaaaccttgtcaagtgatgtttctttcagta--aattcgtagctaggttcgaggatatttcttagtaggtcccaaattag |
140 |
Q |
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| T |
22886210 |
cagatgataaggcaattttagtaac-----catgtgatgtttcttttagtaataattcgtagctaggttctaggaaatttcttagtaggacccgaattag |
22886116 |
T |
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| Q |
141 |
gcatgcaatttttacttcactttggacaacatcttataaataataaacaccgaaca |
196 |
Q |
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| T |
22886115 |
acatgcaatttttccttcacttagcacaaaatcttataaataataaacaccgaaca |
22886060 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 43 - 206
Target Start/End: Complemental strand, 22806027 - 22805856
Alignment:
| Q |
43 |
cagatgataa-ggcaatttaagaaaccttgtcaagtgatgtttctttcagtaa--attcgtagctaggtt-----cgaggatatttcttagtaggtccca |
134 |
Q |
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| T |
22806027 |
cagatgataaaggcaattttagtaaccatgtcatgtgatgtttcttttagaaatgattcgtagctaagttatgttccaggacatttcttactaggaccca |
22805928 |
T |
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| Q |
135 |
aattaggcatgcaatttttacttcactttggacaacatcttataaataataaacaccgaacagaactacaca |
206 |
Q |
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| T |
22805927 |
aattagacttgcaattttttcttcacttaggacaaaatcttataaataataaacaccgaacagaactacaca |
22805856 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 41 - 204
Target Start/End: Complemental strand, 22840773 - 22840607
Alignment:
| Q |
41 |
ctcagatgataa-ggcaatttaagaaaccttgtcaagtgatgtttctttcagtaa--attcgtagctaggttcgaggatatttcttagtaggtcccaaat |
137 |
Q |
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|||||||||||| ||||| || || ||||| |||| | ||||||||||||| || |||||||||||||||| |||| ||||||||||||| ||||||| |
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| T |
22840773 |
ctcagatgataaaggcaaatttagtaacctggtcatgaaatgtttctttcagaaataattcgtagctaggttccaggacatttcttagtaggacccaaat |
22840674 |
T |
|
| Q |
138 |
taggcatgcaatttttacttcactttggacaacatcttataaataataaacaccgaacagaactaca |
204 |
Q |
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||| |||| ||||||| ||||||| |||| ||||||||||||||||||||| |||||||||||| |
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| T |
22840673 |
tagacatgaaatttttctttcacttaccacaaaatcttataaataataaacaccaaacagaactaca |
22840607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 104 - 201
Target Start/End: Complemental strand, 22841286 - 22841189
Alignment:
| Q |
104 |
taggttcgaggatatttcttagtaggtcccaaattaggcatgcaatttttacttcactttggacaacatcttataaataataaacaccgaacagaact |
201 |
Q |
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| T |
22841286 |
taggttccaggacatttcttagtaggacccaaataagacttgcaattttttcttcactttggacaaaatcttataaataataaacactgaacataact |
22841189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 131 - 206
Target Start/End: Complemental strand, 22859041 - 22858966
Alignment:
| Q |
131 |
cccaaattaggcatgcaatttttacttcactttggacaacatcttataaataataaacaccgaacagaactacaca |
206 |
Q |
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| T |
22859041 |
cccaaattagacatgcaatttttccttcacttagcacaaaatcttataaataacaaacaccgaacagaactacaca |
22858966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 104 - 187
Target Start/End: Complemental strand, 22894606 - 22894523
Alignment:
| Q |
104 |
taggttcgaggatatttcttagtaggtcccaaattaggcatgcaatttttacttcactttggacaacatcttataaataataaa |
187 |
Q |
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| T |
22894606 |
taggttccaagacatttcttagtaggacccaaattagacttgcaattttttcttcacctaggacaaaatcttatacataataaa |
22894523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 94 - 204
Target Start/End: Complemental strand, 22815692 - 22815577
Alignment:
| Q |
94 |
aattcgtagctaggttcgaggatatttcttagta----ggtcccaaattaggcatgcaatttttacttcactttggacaacatcttataaataa-taaac |
188 |
Q |
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||||| |||||| |||| |||| ||||||||||| || |||||||||| |||||||||||| |||||||| | |||| ||||||||||||| |||| |
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| T |
22815692 |
aattcctagctaagttccaggacatttcttagtacctaggacccaaattagacatgcaatttttccttcacttagcacaaaatcttataaataacaaaac |
22815593 |
T |
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| Q |
189 |
accgaacagaactaca |
204 |
Q |
| |
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| | |||||||||||| |
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| T |
22815592 |
atcaaacagaactaca |
22815577 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 107 - 187
Target Start/End: Complemental strand, 22876567 - 22876488
Alignment:
| Q |
107 |
gttcgaggatatttcttagtaggtcccaaattaggcatgcaatttttacttcactttggacaacatcttataaataataaa |
187 |
Q |
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| T |
22876567 |
gttccaggacatttcttagtaggatccaaattagacttgcaattttttcttcacttaggacaaaat-atataaataataaa |
22876488 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 144 - 201
Target Start/End: Complemental strand, 22873754 - 22873697
Alignment:
| Q |
144 |
tgcaatttttacttcactttggacaacatcttataaataataaacaccgaacagaact |
201 |
Q |
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| T |
22873754 |
tgcaaatttttcttcacttaggacaaaatcatataaataataaacactgaatagaact |
22873697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 137 - 204
Target Start/End: Original strand, 21150098 - 21150165
Alignment:
| Q |
137 |
ttaggcatgcaatttttacttcactttggacaacatcttataaataataaacaccgaacagaactaca |
204 |
Q |
| |
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|||| |||||||||||| |||||||| | |||| ||||||||||||||||||| | |||||||||||| |
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| T |
21150098 |
ttagacatgcaatttttccttcacttagcacaaaatcttataaataataaacatcaaacagaactaca |
21150165 |
T |
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