View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6923_low_3 (Length: 396)
Name: NF6923_low_3
Description: NF6923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6923_low_3 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 20 - 390
Target Start/End: Original strand, 1936426 - 1936799
Alignment:
| Q |
20 |
ttgtcatctctaaaattgatttacaagtatagcggtcctcaacaacgacaattcgaacttctctatgatttttatcgatagcgtggagattgttggttgc |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1936426 |
ttgtcatctctaaaattgatttacaagtatagcggtcctcaacaacgacaattcgaacttctctatgatttttatcgatagcgtggagattgttggttgc |
1936525 |
T |
|
| Q |
120 |
aaaactggtggaaaatctggcatcatcattaaatccataaaactgatgtattgagactcctgtcctaaacatttaatac-nnnnnnnncacgagtttaac |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| || |||||||||||| |
|
|
| T |
1936526 |
aaaactggtggaaaatctggcatcatcattaaatccataaaactgatgtattgagactcgtgtcctaaacatttaacacaaaaaaaaacacgagtttaac |
1936625 |
T |
|
| Q |
219 |
acaaaaaagagagaatttag--cnnnnnnnnnntagagaattgattcgtgaacatccttatgtgtcaaaccactattgtaccactcatatgtaacatttt |
316 |
Q |
| |
|
|||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1936626 |
acaaaaaagagagaatttagcacaaaaaaaaaatagagaattgattcgtgaacatccttatgtgtcaaaccactattgtaccactcatatgtaacatttt |
1936725 |
T |
|
| Q |
317 |
ttactaattttgagcacatgtttatgtgaacatcattgtttcatttcgagcacatgctcaattgttcttctctc |
390 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1936726 |
ttactaattttgagcacatgtttatgtgaacatcattgtttcatttcgagcacatgctcaattgttcttctctc |
1936799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 252 - 326
Target Start/End: Original strand, 34819621 - 34819695
Alignment:
| Q |
252 |
gagaattgattcgtgaacatccttatgtgtcaaaccactattgtaccactcatatgtaacattttttactaattt |
326 |
Q |
| |
|
|||||||||||| | ||||| |||||||| ||||||||| ||||||||||||||||| |||||||| |||||| |
|
|
| T |
34819621 |
gagaattgattcataaacatgcttatgtggcaaaccactcttgtaccactcatatgtggtattttttattaattt |
34819695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 252 - 326
Target Start/End: Original strand, 37863950 - 37864024
Alignment:
| Q |
252 |
gagaattgattcgtgaacatccttatgtgtcaaaccactattgtaccactcatatgtaacattttttactaattt |
326 |
Q |
| |
|
|||||||||||| | ||||| |||||||| ||||||||| ||||||||||||||||| |||||||| |||||| |
|
|
| T |
37863950 |
gagaattgattcataaacatacttatgtggcaaaccactcttgtaccactcatatgtggtattttttattaattt |
37864024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University