View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6923_low_8 (Length: 252)
Name: NF6923_low_8
Description: NF6923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6923_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 23010863 - 23010624
Alignment:
| Q |
1 |
atcagaggattttacttattttgaatcaacaaaagtggctagcagtcaactattggaggcacttcgagacgaggacatctacatgataggagtgtatgga |
100 |
Q |
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| T |
23010863 |
atcagaggattttacttattttgaatcaacaaaagtggctagcagtcaactactggaggcacttcgagacgaggacatctacatgataggagtgtatgga |
23010764 |
T |
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| Q |
101 |
atgggcggaactgggaaaacagctcttgttactgaagttggtaagaaggttgaagcatcaaatgtttttgacaagactatattaattacagtgtctcaaa |
200 |
Q |
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| T |
23010763 |
atgggcggaactgggaaaacagctcttgttactgaagttggtaagaaggttgaagcatcaaatgtttttgacaagactatattaattacagtgtctcaaa |
23010664 |
T |
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| Q |
201 |
ctcctaatattagagatattcaaggaaaaatagctgatgt |
240 |
Q |
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| T |
23010663 |
ctcccaatattagagatattcaaggaaaaatagctgatgt |
23010624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 61; Significance: 3e-26; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 83 - 231
Target Start/End: Original strand, 21703636 - 21703784
Alignment:
| Q |
83 |
atgataggagtgtatggaatgggcggaactgggaaaacagctcttgttactgaagttggtaagaaggttgaagcatcaaatgtttttgacaagactatat |
182 |
Q |
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| T |
21703636 |
atgataggagtgtatggaatgggtggatgtgggaaaacaactcttgcaactgaagttggtaagaaggctgaggaatcaaatatgttcgataaggttatct |
21703735 |
T |
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| Q |
183 |
taattacagtgtctcaaactcctaatattagagatattcaaggaaaaat |
231 |
Q |
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| T |
21703736 |
taatcacagtgtctcaaactccaaacgttagaaaaattcaaggaaaaat |
21703784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 76 - 231
Target Start/End: Complemental strand, 21715886 - 21715731
Alignment:
| Q |
76 |
catctacatgataggagtgtatggaatgggcggaactgggaaaacagctcttgttactgaagttggtaagaaggttgaagcatcaaatgtttttgacaag |
175 |
Q |
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|||||| |||||||| |||||||||||||| ||| |||||||||| | ||||| || ||||| |||||||||| | | | ||||||| | || || ||| |
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| T |
21715886 |
catctatatgataggtgtgtatggaatgggtggatgtgggaaaacaacacttgtaaccgaagtcggtaagaaggctcaggaatcaaatatgttcgataag |
21715787 |
T |
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| Q |
176 |
actatattaattacagtgtctcaaactcctaatattagagatattcaaggaaaaat |
231 |
Q |
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|||| || |||||||||||||||| ||||||||||| |||||||||||||| |
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| T |
21715786 |
gtaatatctatcacagtgtctcaaactcaaaatattagagacattcaaggaaaaat |
21715731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 64
Target Start/End: Original strand, 21115017 - 21115065
Alignment:
| Q |
16 |
ttattttgaatcaacaaaagtggctagcagtcaactattggaggcactt |
64 |
Q |
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|||||||||||||||||| |||||| || ||||||||||||||||||| |
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| T |
21115017 |
ttattttgaatcaacaaaggtggcttacaatcaactattggaggcactt |
21115065 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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