View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6923_low_9 (Length: 240)
Name: NF6923_low_9
Description: NF6923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6923_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 134; Significance: 7e-70; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 15 - 185
Target Start/End: Complemental strand, 10182973 - 10182799
Alignment:
| Q |
15 |
aagaaccacctccaacaagtccaactagttatcgagatccaagtatttaatctcaaacatgttgcttgaagatgttaaaccagcatgagaagccatattg |
114 |
Q |
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| T |
10182973 |
aagaatcacctccaacaagtccaaccagttatcgagatccaagtatttaatctccaacacattgcttgaagatgttcaaccagcatgagaagccatattg |
10182874 |
T |
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| Q |
115 |
tactcatttgaataattaag----aattgcagatgaaccactcatatgagccgtgacttggatgtttccacactg |
185 |
Q |
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| T |
10182873 |
tactcatttgaataattaagaattaattgcagatgaaccactcatatgagccgtgacttggatgtttccacactg |
10182799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 15 - 157
Target Start/End: Original strand, 10182628 - 10182770
Alignment:
| Q |
15 |
aagaaccacctccaacaagtccaactagttatcgagatccaagtatttaatctcaaacatgttgcttgaagatgttaaaccagcatgagaagccatattg |
114 |
Q |
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| T |
10182628 |
aagaaccgcctccaacaagtccaaccagttatcgagatccaagtattcaatctcaaacacattgcttgaagatgttgaaccagcatgagaagccatattg |
10182727 |
T |
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| Q |
115 |
tactcatttgaataattaagaattgcagatgaaccactcatat |
157 |
Q |
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| T |
10182728 |
tactcatttggataattaagaattgcagatgaaccactcatat |
10182770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 18 - 157
Target Start/End: Complemental strand, 33003268 - 33003129
Alignment:
| Q |
18 |
aaccacctccaacaagtccaactagttatcgagatccaagtatttaatctcaaacatgttgcttgaagatgttaaaccagcatgagaagccatattgtac |
117 |
Q |
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| T |
33003268 |
aaccacctccaacaagtctaaccagttatcaagatccaagtattcaaacgcaaacacattgcttgaagatgttgaaccagcatgagaagccatattgtac |
33003169 |
T |
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| Q |
118 |
tcatttgaataattaagaattgcagatgaaccactcatat |
157 |
Q |
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| T |
33003168 |
tcatttgggaaattgaggatggcagatgaaccactcatat |
33003129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 18 - 157
Target Start/End: Complemental strand, 33011375 - 33011236
Alignment:
| Q |
18 |
aaccacctccaacaagtccaactagttatcgagatccaagtatttaatctcaaacatgttgcttgaagatgttaaaccagcatgagaagccatattgtac |
117 |
Q |
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| T |
33011375 |
aaccacctccaacaagtccaaccagttatcaagatccaagtattcaaacttaaacacattgtttgaagatgttgaaccagcgtgagaagccatattgtac |
33011276 |
T |
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| Q |
118 |
tcatttgaataattaagaattgcagatgaaccactcatat |
157 |
Q |
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| T |
33011275 |
tcatttgggaaattgaggattgcagatgaaccactcatat |
33011236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 168 - 223
Target Start/End: Original strand, 33011179 - 33011234
Alignment:
| Q |
168 |
ttggatgtttccacactgctgaggaagcggctagagtttatgatatagctgcttat |
223 |
Q |
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| T |
33011179 |
ttggatgtttccacactgctgatgaagcggctagagcttatgatagagctgcttat |
33011234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 34 - 157
Target Start/End: Complemental strand, 32997581 - 32997458
Alignment:
| Q |
34 |
tccaactagttatcgagatccaagtatttaatctcaaacatgttgcttgaagatgttaaaccagcatgagaagccatattgtactcatttgaataattaa |
133 |
Q |
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| T |
32997581 |
tccaacaagctatctagatccaagtattcaaactcaaacacattgctataagatgttgcaccagcaccagcagaaatattgtactcatttggaaaattga |
32997482 |
T |
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| Q |
134 |
gaattgcagatgaaccactcatat |
157 |
Q |
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| T |
32997481 |
ggattgctgatgaaccactcatat |
32997458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 168 - 223
Target Start/End: Original strand, 33003072 - 33003127
Alignment:
| Q |
168 |
ttggatgtttccacactgctgaggaagcggctagagtttatgatatagctgcttat |
223 |
Q |
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| T |
33003072 |
ttggatgtttcaacactgctgatgaagcggctagagcttatgatagagctgcttat |
33003127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 167 - 223
Target Start/End: Original strand, 32997400 - 32997456
Alignment:
| Q |
167 |
cttggatgtttccacactgctgaggaagcggctagagtttatgatatagctgcttat |
223 |
Q |
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| T |
32997400 |
cttggatgcttccacactagtgaggaagcggctagggcttatgatagagctgcttat |
32997456 |
T |
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