View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6924_high_6 (Length: 237)
Name: NF6924_high_6
Description: NF6924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6924_high_6 |
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| [»] scaffold0136 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 16 - 224
Target Start/End: Original strand, 16998069 - 16998277
Alignment:
| Q |
16 |
atatggatgtcgat-attttgggttgctagctccaatttatccaccatgtagttagacacaatttccactattaatgataacatcccaaaattttgccaa |
114 |
Q |
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| T |
16998069 |
atatggatgtcgatgattttgggttgctagctccaacttatccaccatgtagttagacacaatttccactattaatgataacatcccaaaattttgctaa |
16998168 |
T |
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| Q |
115 |
agaacattctttcatacaataatcaatcacatcaatcatacaacatgagtcctgaatagaaagacccttcataagattagtaaactcaaattcaacttta |
214 |
Q |
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| T |
16998169 |
agagcattctttcatacaataatcaatcacatcaatcatacaacatgagtcctgaat-ggaagacccttcgtaagattagtatactcaaattcaacttta |
16998267 |
T |
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| Q |
215 |
tattcttctc |
224 |
Q |
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| T |
16998268 |
tattcttctc |
16998277 |
T |
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Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 117 - 162
Target Start/End: Complemental strand, 24320092 - 24320047
Alignment:
| Q |
117 |
aacattctttcatacaataatcaatcacatcaatcatacaacatga |
162 |
Q |
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| T |
24320092 |
aacattctttcacacgatgatcaatcacatcaatcatacaacatga |
24320047 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 213
Target Start/End: Original strand, 21513722 - 21513816
Alignment:
| Q |
119 |
cattctttcatacaataatcaatcacatcaatcatacaacatgagtcctgaatagaaagacccttcataagattagtaaactcaaattcaacttt |
213 |
Q |
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| T |
21513722 |
cattctttcacataatggtcaataacatcaaccatacaacatgagtcttgaatagagggactcttcatcaaatttgcaatctcaaattccacttt |
21513816 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0136 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0136
Description:
Target: scaffold0136; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 175
Target Start/End: Complemental strand, 19461 - 19429
Alignment:
| Q |
143 |
acatcaatcatacaacatgagtcctgaatagaa |
175 |
Q |
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| T |
19461 |
acatcaatcatacaacatgagtcctgaacagaa |
19429 |
T |
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