View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6924_low_12 (Length: 204)

Name: NF6924_low_12
Description: NF6924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6924_low_12
NF6924_low_12
[»] chr3 (28 HSPs)
chr3 (1-193)||(13980642-13980834)
chr3 (1-196)||(40800621-40800816)
chr3 (1-196)||(3110492-3110687)
chr3 (1-196)||(13990813-13991008)
chr3 (1-196)||(23344357-23344552)
chr3 (1-185)||(2168645-2168829)
chr3 (19-196)||(3112109-3112286)
chr3 (17-196)||(2174201-2174380)
chr3 (19-196)||(9730296-9730473)
chr3 (19-196)||(13985259-13985436)
chr3 (19-196)||(23338828-23339005)
chr3 (19-193)||(13991974-13992148)
chr3 (19-196)||(40802545-40802722)
chr3 (19-196)||(48216319-48216496)
chr3 (1-133)||(9724670-9724801)
chr3 (76-188)||(34578808-34578920)
chr3 (16-117)||(20454614-20454715)
chr3 (130-196)||(9721546-9721612)
chr3 (1-86)||(49486816-49486901)
chr3 (1-89)||(15752588-15752676)
chr3 (1-89)||(21477474-21477561)
chr3 (114-196)||(17033242-17033323)
chr3 (1-89)||(2978324-2978412)
chr3 (1-89)||(21883406-21883494)
chr3 (19-87)||(21473104-21473172)
chr3 (112-177)||(19307722-19307787)
chr3 (1-62)||(29225269-29225330)
chr3 (1-29)||(44122179-44122207)
[»] chr7 (21 HSPs)
chr7 (1-196)||(557855-558050)
chr7 (1-196)||(16648404-16648599)
chr7 (1-196)||(17622765-17622960)
chr7 (19-196)||(576038-576215)
chr7 (1-196)||(32148458-32148653)
chr7 (1-196)||(42208874-42209075)
chr7 (18-196)||(42167604-42167782)
chr7 (19-196)||(44655598-44655775)
chr7 (1-196)||(25499035-25499252)
chr7 (1-153)||(26456872-26457025)
chr7 (19-192)||(38011676-38011845)
chr7 (19-196)||(25493816-25494015)
chr7 (22-139)||(30027341-30027462)
chr7 (3-57)||(42162377-42162431)
chr7 (108-155)||(11726506-11726553)
chr7 (1-54)||(8248092-8248145)
chr7 (1-89)||(340382-340470)
chr7 (21-81)||(11726601-11726661)
chr7 (1-30)||(20125248-20125277)
chr7 (1-29)||(7578500-7578528)
chr7 (109-153)||(11726398-11726442)
[»] chr2 (28 HSPs)
chr2 (1-196)||(22430329-22430524)
chr2 (1-196)||(22435923-22436118)
chr2 (1-196)||(636263-636458)
chr2 (1-196)||(43776972-43777167)
chr2 (1-196)||(7909946-7910141)
chr2 (1-196)||(14898764-14898959)
chr2 (19-196)||(630730-630907)
chr2 (17-196)||(7917401-7917580)
chr2 (19-196)||(22424977-22425154)
chr2 (1-196)||(1525623-1525824)
chr2 (17-196)||(14893223-14893406)
chr2 (19-196)||(43771464-43771639)
chr2 (19-196)||(26694152-26694329)
chr2 (19-196)||(1519141-1519322)
chr2 (92-196)||(26702321-26702425)
chr2 (19-117)||(19052428-19052526)
chr2 (1-89)||(19437626-19437714)
chr2 (1-89)||(24053377-24053465)
chr2 (1-36)||(5836220-5836255)
chr2 (112-157)||(19052365-19052411)
chr2 (19-89)||(8872239-8872310)
chr2 (4-89)||(43287482-43287567)
chr2 (1-29)||(7385002-7385030)
chr2 (112-172)||(14188410-14188470)
chr2 (1-29)||(16443478-16443506)
chr2 (1-29)||(17319665-17319693)
chr2 (1-29)||(19912244-19912272)
chr2 (13-89)||(25445148-25445224)
[»] chr5 (19 HSPs)
chr5 (1-196)||(28366964-28367159)
chr5 (19-195)||(1536539-1536715)
chr5 (19-196)||(28375704-28375881)
chr5 (18-196)||(30963157-30963333)
chr5 (1-190)||(34647923-34648108)
chr5 (76-196)||(30927366-30927484)
chr5 (1-64)||(30957712-30957775)
chr5 (108-196)||(14663981-14664064)
chr5 (16-64)||(14664070-14664118)
chr5 (1-89)||(35264629-35264717)
chr5 (1-89)||(25365483-25365571)
chr5 (6-64)||(24111219-24111277)
chr5 (1-86)||(23053471-23053556)
chr5 (1-89)||(21171276-21171364)
chr5 (112-189)||(23775275-23775352)
chr5 (112-189)||(23862229-23862306)
chr5 (112-196)||(26459273-26459357)
chr5 (1-75)||(16675546-16675620)
chr5 (114-179)||(54437-54502)
[»] chr1 (24 HSPs)
chr1 (1-196)||(27178953-27179148)
chr1 (4-196)||(15716608-15716800)
chr1 (16-196)||(27194954-27195134)
chr1 (19-196)||(26711460-26711637)
chr1 (19-196)||(33498402-33498579)
chr1 (19-196)||(15711042-15711219)
chr1 (1-148)||(33492968-33493115)
chr1 (1-190)||(17721699-17721909)
chr1 (35-117)||(16498808-16498889)
chr1 (54-180)||(3343872-3344002)
chr1 (107-155)||(16498748-16498796)
chr1 (1-89)||(37356822-37356910)
chr1 (1-89)||(18535068-18535156)
chr1 (1-89)||(31093036-31093124)
chr1 (144-196)||(33491507-33491559)
chr1 (104-159)||(9088672-9088727)
chr1 (112-180)||(22575864-22575932)
chr1 (112-196)||(29644986-29645070)
chr1 (1-44)||(11660159-11660202)
chr1 (1-32)||(29547722-29547753)
chr1 (1-75)||(28519257-28519331)
chr1 (1-75)||(38991081-38991155)
chr1 (1-30)||(145538-145567)
chr1 (21-62)||(47364695-47364736)
[»] chr8 (12 HSPs)
chr8 (1-196)||(12756145-12756340)
chr8 (19-196)||(24052017-24052194)
chr8 (19-196)||(41043478-41043655)
chr8 (5-196)||(41048844-41049028)
chr8 (1-89)||(30714304-30714392)
chr8 (1-89)||(30722081-30722169)
chr8 (112-196)||(2232107-2232190)
chr8 (118-148)||(24042894-24042924)
chr8 (1-75)||(27679727-27679801)
chr8 (1-75)||(37209694-37209768)
chr8 (1-54)||(21247658-21247711)
chr8 (1-30)||(23429515-23429544)
[»] chr4 (22 HSPs)
chr4 (1-196)||(20192575-20192770)
chr4 (1-196)||(6162229-6162424)
chr4 (1-191)||(53982076-53982265)
chr4 (19-196)||(6156550-6156727)
chr4 (19-196)||(20197939-20198116)
chr4 (1-89)||(12659280-12659368)
chr4 (1-89)||(16325807-16325895)
chr4 (1-64)||(19582017-19582080)
chr4 (1-89)||(1874081-1874169)
chr4 (1-89)||(30673788-30673876)
chr4 (4-89)||(25687647-25687732)
chr4 (115-155)||(12733942-12733982)
chr4 (1-89)||(23200508-23200596)
chr4 (16-70)||(7739865-7739919)
chr4 (1-75)||(12435449-12435523)
chr4 (109-159)||(28295253-28295303)
chr4 (1-75)||(29333619-29333693)
chr4 (1-75)||(42411089-42411163)
chr4 (1-62)||(4393869-4393930)
chr4 (19-78)||(7156032-7156092)
chr4 (1-89)||(12428972-12429060)
chr4 (17-89)||(18890000-18890072)
[»] chr6 (10 HSPs)
chr6 (1-195)||(14855918-14856112)
chr6 (19-196)||(14847078-14847255)
chr6 (18-196)||(26680569-26680746)
chr6 (2-106)||(6933022-6933126)
chr6 (19-73)||(6924849-6924903)
chr6 (108-180)||(10345722-10345793)
chr6 (1-47)||(19441301-19441344)
chr6 (112-196)||(31023400-31023484)
chr6 (92-157)||(28956607-28956672)
chr6 (1-29)||(17270338-17270366)
[»] scaffold0004 (2 HSPs)
scaffold0004 (1-196)||(345654-345849)
scaffold0004 (19-196)||(350975-351152)
[»] scaffold0169 (2 HSPs)
scaffold0169 (42-196)||(10980-11134)
scaffold0169 (18-177)||(8694-8853)
[»] scaffold0211 (1 HSPs)
scaffold0211 (19-195)||(26903-27079)
[»] scaffold0124 (1 HSPs)
scaffold0124 (9-195)||(39431-39639)
[»] scaffold0121 (1 HSPs)
scaffold0121 (19-196)||(11409-11608)
[»] scaffold0014 (1 HSPs)
scaffold0014 (1-89)||(111857-111945)
[»] scaffold0102 (1 HSPs)
scaffold0102 (1-54)||(14007-14060)


Alignment Details
Target: chr3 (Bit Score: 169; Significance: 8e-91; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 1 - 193
Target Start/End: Complemental strand, 13980834 - 13980642
Alignment:
Q  1 tggacatccaagggggagtgttatgaatattataagtggatgtctatatagcaattgggttattaggtcatactattagcttattgggccatattgtgct 100  Q
    |||||||||||||  |||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||    
T  13980834 tggacatccaaggaagagtgttatgaatattataagtggatgtctatataggaattgggttattgggtcatactattagcttattgggccatattgtgct 13980735  T
Q  101 tgctccccaagtcattgtatttctctataaatagagctcatatgtaacctaattgtacataccaagagaataatataatcctctttcttctct 193  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||    
T  13980734 tgctccccaagtcattgtatttctctataaatagagctcatatgtaatctaattgtacataccaagagaataatataatcatctttcttctct 13980642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 40800816 - 40800621
Alignment:
Q  1 tggacatccaagggggagtgttatgaatattataagtggatgtctatatagcaattgggttattaggtcatactattagcttattgggccatattgtgct 100  Q
    |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| | ||||| | |||||||||||||||||||||||||    
T  40800816 tggacatccaagggggagtgttatgaatattacaagtggatgtccatatagcaattgggttattggatcatattgttagcttattgggccatattgtgct 40800717  T
Q  101 tgctccccaagtcattgtatttctctataaatagagctcatatgtaacctaattgtacataccaagagaataatataatcctctttcttctctctc 196  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| |||||||||||||||    
T  40800716 tgctccccaagtcattgtatttctctataaatagagctcatatgtaacctaattatacataacaagagaataatataatcatctttcttctctctc 40800621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 156; E-Value: 4e-83
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 3110687 - 3110492
Alignment:
Q  1 tggacatccaagggggagtgttatgaatattataagtggatgtctatatagcaattgggttattaggtcatactattagcttattgggccatattgtgct 100  Q
    |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| | ||||| | |||||||||||||||||||||||||    
T  3110687 tggacatccaagggggagtgttatgaatattacaagtggatgtccatatagcaattgggttattggatcatattgttagcttattgggccatattgtgct 3110588  T
Q  101 tgctccccaagtcattgtatttctctataaatagagctcatatgtaacctaattgtacataccaagagaataatataatcctctttcttctctctc 196  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||  ||||||||||||||||||||||||||||||||||    
T  3110587 tgctccccaagtcattgtatttctctataaatagagctcatatgtaacttaattatacatcacaagagaataatataatcctctttcttctctctc 3110492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 156; E-Value: 4e-83
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 13990813 - 13991008
Alignment:
Q  1 tggacatccaagggggagtgttatgaatattataagtggatgtctatatagcaattgggttattaggtcatactattagcttattgggccatattgtgct 100  Q
    |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| | ||||| | ||||||||||||||||||||||| |    
T  13990813 tggacatccaagggggagtgttatgaatattacaagtggatgtccatatagcaattgggttattggatcatattgttagcttattgggccatattgtgtt 13990912  T
Q  101 tgctccccaagtcattgtatttctctataaatagagctcatatgtaacctaattgtacataccaagagaataatataatcctctttcttctctctc 196  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||  ||||||||||||||||||||||||||||||||||    
T  13990913 tgctccccaagtcattgtatttctctataaatagagctcatatgtaacctaattatacatcacaagagaataatataatcctctttcttctctctc 13991008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 156; E-Value: 4e-83
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 23344357 - 23344552
Alignment:
Q  1 tggacatccaagggggagtgttatgaatattataagtggatgtctatatagcaattgggttattaggtcatactattagcttattgggccatattgtgct 100  Q
    |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| | ||||| | |||||||||||||||||||||||||    
T  23344357 tggacatccaagggggagtgttatgaatattacaagtggatgtccatatagcaattgggttattggatcatattgttagcttattgggccatattgtgct 23344456  T
Q  101 tgctccccaagtcattgtatttctctataaatagagctcatatgtaacctaattgtacataccaagagaataatataatcctctttcttctctctc 196  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||  ||||||||||||||||||||||||||||||||||    
T  23344457 tgctccccaagtcattgtatttctctataaatagagctcatatgtaacctaattatagatcacaagagaataatataatcctctttcttctctctc 23344552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 1 - 185
Target Start/End: Complemental strand, 2168829 - 2168645
Alignment:
Q  1 tggacatccaagggggagtgttatgaatattataagtggatgtctatatagcaattgggttattaggtcatactattagcttattgggccatattgtgct 100  Q
    |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| | ||||| | ||||||||||||||||||||||| |    
T  2168829 tggacatccaagggggagtgttatgaatattacaagtggatgtccatatagcaattgggttattggatcatattgttagcttattgggccatattgtgtt 2168730  T
Q  101 tgctccccaagtcattgtatttctctataaatagagctcatatgtaacctaattgtacataccaagagaataatataatcctctt 185  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||  |||||||||||||||||||||||    
T  2168729 tgctccccaagtcattgtatttctctataaatagagctcatatgtagcctaattatacatcacaagagaataatataatcctctt 2168645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 138; E-Value: 2e-72
Query Start/End: Original strand, 19 - 196
Target Start/End: Complemental strand, 3112286 - 3112109
Alignment:
Q  19 tgttatgaatattataagtggatgtctatatagcaattgggttattaggtcatactattagcttattgggccatattgtgcttgctccccaagtcattgt 118  Q
    |||||||||||||| ||||||||||| |||||||||||||||||| || ||||| | |||||||||||||||||||||||||||||||||||||||||||    
T  3112286 tgttatgaatattacaagtggatgtccatatagcaattgggttataagatcatattgttagcttattgggccatattgtgcttgctccccaagtcattgt 3112187  T
Q  119 atttctctataaatagagctcatatgtaacctaattgtacataccaagagaataatataatcctctttcttctctctc 196  Q
    |||||||||||||||||||||||||||||| ||||| |||||  ||||||||||||||||||||||||||||||||||    
T  3112186 atttctctataaatagagctcatatgtaacttaattatacatcacaagagaataatataatcctctttcttctctctc 3112109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 17 - 196
Target Start/End: Complemental strand, 2174380 - 2174201
Alignment:
Q  17 agtgttatgaatattataagtggatgtctatatagcaattgggttattaggtcatactattagcttattgggccatattgtgcttgctccccaagtcatt 116  Q
    |||||||||||||||| ||||| ||||| ||||||||||||||||||| | ||||| | ||||||||||||||||||||||| |||||||||||||||||    
T  2174380 agtgttatgaatattacaagtgtatgtccatatagcaattgggttattggatcatattgttagcttattgggccatattgtgtttgctccccaagtcatt 2174281  T
Q  117 gtatttctctataaatagagctcatatgtaacctaattgtacataccaagagaataatataatcctctttcttctctctc 196  Q
    |||||||||||||||||||||||||||||||||||||| |||||  ||||||||||||||||||||||||||||||||||    
T  2174280 gtatttctctataaatagagctcatatgtaacctaattatacatcacaagagaataatataatcctctttcttctctctc 2174201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 19 - 196
Target Start/End: Complemental strand, 9730473 - 9730296
Alignment:
Q  19 tgttatgaatattataagtggatgtctatatagcaattgggttattaggtcatactattagcttattgggccatattgtgcttgctccccaagtcattgt 118  Q
    |||||||||||||| ||||||||||| ||||||||||||||||||| | ||||| | ||||||||||||||||||||||||||||||||||| |||||||    
T  9730473 tgttatgaatattacaagtggatgtccatatagcaattgggttattggatcatattgttagcttattgggccatattgtgcttgctccccaaatcattgt 9730374  T
Q  119 atttctctataaatagagctcatatgtaacctaattgtacataccaagagaataatataatcctctttcttctctctc 196  Q
    ||||||||||||||||||||||||||||| |||||| |||||  ||||||||||||||||||||||||||||||||||    
T  9730373 atttctctataaatagagctcatatgtaatctaattatacatgacaagagaataatataatcctctttcttctctctc 9730296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 19 - 196
Target Start/End: Original strand, 13985259 - 13985436
Alignment:
Q  19 tgttatgaatattataagtggatgtctatatagcaattgggttattaggtcatactattagcttattgggccatattgtgcttgctccccaagtcattgt 118  Q
    |||||||||||||| ||||||||||| ||||||||||||||||||| | ||||| | ||||||||||||||||||||||| |||||||||||||||||||    
T  13985259 tgttatgaatattacaagtggatgtccatatagcaattgggttattggatcatattgttagcttattgggccatattgtgtttgctccccaagtcattgt 13985358  T
Q  119 atttctctataaatagagctcatatgtaacctaattgtacataccaagagaataatataatcctctttcttctctctc 196  Q
    |||||||||||||||||| ||||||||||||||||| |||||  ||||||||||||||||||||||||||||||||||    
T  13985359 atttctctataaatagagatcatatgtaacctaattatacatcacaagagaataatataatcctctttcttctctctc 13985436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 19 - 196
Target Start/End: Original strand, 23338828 - 23339005
Alignment:
Q  19 tgttatgaatattataagtggatgtctatatagcaattgggttattaggtcatactattagcttattgggccatattgtgcttgctccccaagtcattgt 118  Q
    |||||||||||||| ||||||||||| ||||||||||||| ||||| | ||||| | |||||||||||||||||||||||||||||||||||||||||||    
T  23338828 tgttatgaatattacaagtggatgtccatatagcaattggattattggatcatattgttagcttattgggccatattgtgcttgctccccaagtcattgt 23338927  T
Q  119 atttctctataaatagagctcatatgtaacctaattgtacataccaagagaataatataatcctctttcttctctctc 196  Q
    |||||||||||||||||||||||||||||||||||| || ||  ||||||||||||||||||||||||||||||||||    
T  23338928 atttctctataaatagagctcatatgtaacctaattatagatcacaagagaataatataatcctctttcttctctctc 23339005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 127; E-Value: 9e-66
Query Start/End: Original strand, 19 - 193
Target Start/End: Complemental strand, 13992148 - 13991974
Alignment:
Q  19 tgttatgaatattataagtggatgtctatatagcaattgggttattaggtcatactattagcttattgggccatattgtgcttgctccccaagtcattgt 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||  |||||||||||    
T  13992148 tgttatgaatattataagtggatgtctatatagcaattgggttattgggtcatactattagcttattgggtcatattgtgcttgctcttcaagtcattgt 13992049  T
Q  119 atttctctataaatagagctcatatgtaacctaattgtacataccaagagaataatataatcctctttcttctct 193  Q
     ||| | ||||||||||||||||||| ||||||||| |||||| |||||||||||||||||  ||||||||||||    
T  13992048 gtttatgtataaatagagctcatatgcaacctaattatacatatcaagagaataatataattatctttcttctct 13991974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 19 - 196
Target Start/End: Complemental strand, 40802722 - 40802545
Alignment:
Q  19 tgttatgaatattataagtggatgtctatatagcaattgggttattaggtcatactattagcttattgggccatattgtgcttgctccccaagtcattgt 118  Q
    |||||||||||||| ||||||||||| |||||||||||| |||||| | ||||| | |||||||||||||| |||||||||||||| |||||||||||||    
T  40802722 tgttatgaatattacaagtggatgtccatatagcaattgagttattggatcatattgttagcttattgggcgatattgtgcttgcttcccaagtcattgt 40802623  T
Q  119 atttctctataaatagagctcatatgtaacctaattgtacataccaagagaataatataatcctctttcttctctctc 196  Q
    |||||||||||||||||||||||||||||| ||||| |||||  |||||||||||||||||| |||||||||||||||    
T  40802622 atttctctataaatagagctcatatgtaacttaattatacatcacaagagaataatataatcatctttcttctctctc 40802545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 19 - 196
Target Start/End: Complemental strand, 48216496 - 48216319
Alignment:
Q  19 tgttatgaatattataagtggatgtctatatagcaattgggttattaggtcatactattagcttattgggccatattgtgcttgctccccaagtcattgt 118  Q
    |||||||||||||| ||||||||||| ||||||||||||||||||| | ||||| | | |||||||||||||||||| || |||||||||||||||||||    
T  48216496 tgttatgaatattacaagtggatgtccatatagcaattgggttattggatcatattgtcagcttattgggccatattttggttgctccccaagtcattgt 48216397  T
Q  119 atttctctataaatagagctcatatgtaacctaattgtacataccaagagaataatataatcctctttcttctctctc 196  Q
    |||||||||||||||||||||||||||||||||||| || ||  |||||||||||||||||| |||||||||||||||    
T  48216396 atttctctataaatagagctcatatgtaacctaattatatatcacaagagaataatataatcatctttcttctctctc 48216319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 9724801 - 9724670
Alignment:
Q  1 tggacatccaagggggagtgttatgaatattataagtggatgtctatatagcaattgggttattaggtcatactattagcttattgggccatattgtgct 100  Q
    ||||||||||||||||||||||||||||||||  |||||||||| ||||||||||||||||||| | ||||| | ||||||| || ||||||||||||||    
T  9724801 tggacatccaagggggagtgttatgaatattactagtggatgtccatatagcaattgggttattggatcatattgttagctt-tttggccatattgtgct 9724703  T
Q  101 tgctccccaagtcattgtatttctctataaata 133  Q
    |||||||||||||||||||||||||||||||||    
T  9724702 tgctccccaagtcattgtatttctctataaata 9724670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 76 - 188
Target Start/End: Complemental strand, 34578920 - 34578808
Alignment:
Q  76 ttagcttattgggccatattgtgcttgctccccaagtcattgtatttctctataaatagagctcatatgtaacctaattgtacataccaagagaataata 175  Q
    ||||||||||||  |||||||| |||  ||||||||||||||||||||||||||||||||||| |||||||||||||||    |||| ||||||||||||    
T  34578920 ttagcttattggatcatattgtacttattccccaagtcattgtatttctctataaatagagcttatatgtaacctaattagtgatactaagagaataata 34578821  T
Q  176 taatcctctttct 188  Q
    ||||| |||||||    
T  34578820 taatcatctttct 34578808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 16 - 117
Target Start/End: Original strand, 20454614 - 20454715
Alignment:
Q  16 gagtgttatgaatattataagtggatgtctatatagcaattgggttattaggtcatactattagcttattgggccatattgtgcttgctccccaagtcat 115  Q
    ||||||||  ||||||||||||||||||| ||||||||||||||||||| | |||||||||||  |||||| |  |||||||||||| || |||||| ||    
T  20454614 gagtgttacaaatattataagtggatgtccatatagcaattgggttattggatcatactattaatttattgtgttatattgtgcttgatctccaagttat 20454713  T
Q  116 tg 117  Q
    ||    
T  20454714 tg 20454715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 130 - 196
Target Start/End: Complemental strand, 9721612 - 9721546
Alignment:
Q  130 aatagagctcatatgtaacctaattgtacataccaagagaataatataatcctctttcttctctctc 196  Q
    |||| ||||||||||||  |||||| |||||  ||||||||||||||||||||||||||||||||||    
T  9721612 aataaagctcatatgtactctaattatacatcacaagagaataatataatcctctttcttctctctc 9721546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 49486901 - 49486816
Alignment:
Q  1 tggacatccaagggggagtgttatgaatattataagtggatgtctatatagcaattgggttattaggtcatactattagcttattg 86  Q
    |||||||||||||||||||||||| |||||||  |||||||||| | ||||||| || |||| | || ||||||||||| ||||||    
T  49486901 tggacatccaagggggagtgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatactattaggttattg 49486816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 15752676 - 15752588
Alignment:
Q  1 tggacatccaagggggagtgttatgaatattataagtggatgtctatatagcaattgggttattaggtcatactattagcttattgggc 89  Q
    ||||||||||||||||| |||||| |||||||  |||||||||| | ||||||| || |||||| || ||||||| ||| |||||||||    
T  15752676 tggacatccaagggggaatgttataaatattaatagtggatgtccaaatagcaaatgtgttattgggccatactactaggttattgggc 15752588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 21477474 - 21477561
Alignment:
Q  1 tggacatccaagggggagtgttatgaatattataagtggatgtctatatagcaattgggttattaggtcatactattagcttattgggc 89  Q
    |||||||||||||||||||||||| |||||||  |||||||||| | ||||||| || |||||| || ||||||| ||| |||||||||    
T  21477474 tggacatccaagggggagtgttataaatattaatagtggatgtccaaatagcaa-tgtgttattgggccatactactaggttattgggc 21477561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 114 - 196
Target Start/End: Original strand, 17033242 - 17033323
Alignment:
Q  114 attgtatttctctataaatagagctcatatgtaacctaattgtacataccaagagaataatataatcctctttcttctctctc 196  Q
    |||||| ||||||||||||||||  || ||||||| || ||||||||   |||||||||||||||||||| ||||||||||||    
T  17033242 attgtacttctctataaatagagaccacatgtaacata-ttgtacattataagagaataatataatcctcgttcttctctctc 17033323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 2978412 - 2978324
Alignment:
Q  1 tggacatccaagggggagtgttatgaatattataagtggatgtctatatagcaattgggttattaggtcatactattagcttattgggc 89  Q
    |||||||||||||||||||||||| |||||||  |||||||||| | ||| ||| || |||| | || ||||||| ||| |||||||||    
T  2978412 tggacatccaagggggagtgttataaatattaatagtggatgtccaaataacaaatgtgttagtgggccatactactaggttattgggc 2978324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 21883406 - 21883494
Alignment:
Q  1 tggacatccaagggggagtgttatgaatattataagtggatgtctatatagcaattgggttattaggtcatactattagcttattgggc 89  Q
    |||||||||||||||||||||||| |||||||  || ||||||| | ||||||| || ||||||  | ||||||| ||| |||||||||    
T  21883406 tggacatccaagggggagtgttataaatattaatagcggatgtccaaatagcaaatgtgttattgagccatactactaggttattgggc 21883494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 87
Target Start/End: Original strand, 21473104 - 21473172
Alignment:
Q  19 tgttatgaatattataagtggatgtctatatagcaattgggttattaggtcatactattagcttattgg 87  Q
    |||||| |||||||  |||||||||| | ||||||| || |||||| || |||||||||||||||||||    
T  21473104 tgttataaatattaatagtggatgtccaaatagcaaatgtgttattgggccatactattagcttattgg 21473172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 112 - 177
Target Start/End: Complemental strand, 19307787 - 19307722
Alignment:
Q  112 tcattgtatttctctataaatagagctcatatgtaacctaattgtacataccaagagaataatata 177  Q
    ||||||||||||||||||||||||| ||| ||||||| ||| |  |||| | | ||||||||||||    
T  19307787 tcattgtatttctctataaatagagatcacatgtaacataacttgacatccaaggagaataatata 19307722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 29225269 - 29225330
Alignment:
Q  1 tggacatccaagggggagtgttatgaatattataagtggatgtctatatagcaattgggtta 62  Q
    |||||||||||| | |||| ||||||||||||| |||| ||||| ||||| ||| |||||||    
T  29225269 tggacatccaagagagagtattatgaatattatgagtgaatgtccatataacaaatgggtta 29225330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 44122207 - 44122179
Alignment:
Q  1 tggacatccaagggggagtgttatgaata 29  Q
    |||||||||||||||||||||||||||||    
T  44122207 tggacatccaagggggagtgttatgaata 44122179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 168; Significance: 3e-90; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 558050 - 557855
Alignment:
Q  1 tggacatccaagggggagtgttatgaatattataagtggatgtctatatagcaattgggttattaggtcatactattagcttattgggccatattgtgct 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |||||||||||||||||||||||||||||||||||    
T  558050 tggacatccaagggggagtgttatgaatattataagtggatgtctatataacaattcggttattgggtcatactattagcttattgggccatattgtgct 557951  T
Q  101 tgctccccaagtcattgtatttctctataaatagagctcatatgtaacctaattgtacataccaagagaataatataatcctctttcttctctctc 196  Q
    |||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||    
T  557950 tgcttcccaagtcattgtatttctctataaatagagttcatatgtaacctaattgtacatcacaagagaataatataatcctctttcttctctctc 557855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 16648404 - 16648599
Alignment:
Q  1 tggacatccaagggggagtgttatgaatattataagtggatgtctatatagcaattgggttattaggtcatactattagcttattgggccatattgtgct 100  Q
    ||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||| | ||||| | |||||||||||||||||||||||||    
T  16648404 tggacatccaagggggaatgttatgaatattacaagtggatgtccatatagcaattgggttattggatcatattgttagcttattgggccatattgtgct 16648503  T
Q  101 tgctccccaagtcattgtatttctctataaatagagctcatatgtaacctaattgtacataccaagagaataatataatcctctttcttctctctc 196  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||  |||||||| |||||||||||||||||||||||||    
T  16648504 tgctccccaagtcattgtatttctctataaatagagctcatatgtaacctaattatacatcacaagagaaaaatataatcctctttcttctctctc 16648599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 17622765 - 17622960
Alignment:
Q  1 tggacatccaagggggagtgttatgaatattataagtggatgtctatatagcaattgggttattaggtcatactattagcttattgggccatattgtgct 100  Q
    ||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||| | ||||| | |||||||||||||||||||||||||    
T  17622765 tggacatccaagggggaatgttatgaatattacaagtggatgtccatatagcaattgggttattggatcatattgttagcttattgggccatattgtgct 17622864  T
Q  101 tgctccccaagtcattgtatttctctataaatagagctcatatgtaacctaattgtacataccaagagaataatataatcctctttcttctctctc 196  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||  |||||||| |||||||||||||||||||||||||    
T  17622865 tgctccccaagtcattgtatttctctataaatagagctcatatgtaacctaattatacatcacaagagaaaaatataatcctctttcttctctctc 17622960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 19 - 196
Target Start/End: Complemental strand, 576215 - 576038
Alignment:
Q  19 tgttatgaatattataagtggatgtctatatagcaattgggttattaggtcatactattagcttattgggccatattgtgcttgctccccaagtcattgt 118  Q
    |||||||||||||||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||||||||||||||| ||||| |||||||||||||    
T  576215 tgttatgaatattataagtggatgtctatataacaattcggttattgggtcatactattagcttattgggccatattgtgattgcttcccaagtcattgt 576116  T
Q  119 atttctctataaatagagctcatatgtaacctaattgtacataccaagagaataatataatcctctttcttctctctc 196  Q
    |||||||||||||||||| |||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||    
T  576115 atttctctataaatagagttcatatgtaacctaattgtacatcacaagagaataatataatcctctttcttctctctc 576038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 32148458 - 32148653
Alignment:
Q  1 tggacatccaagggggagtgttatgaatattataagtggatgtctatatagcaattgggttattaggtcatactattagcttattgggccatattgtgct 100  Q
    |||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||| | ||||| | |||| ||||||||||||||||||||    
T  32148458 tggacatccaagggggagtgttatgaatattacaagtggatgtccatataacaattgggttattggatcatattgttagtttattgggccatattgtgct 32148557  T
Q  101 tgctccccaagtcattgtatttctctataaatagagctcatatgtaacctaattgtacataccaagagaataatataatcctctttcttctctctc 196  Q
    ||||||| |||||||||||||||||||||||||||||| ||||||||||||||| |||||  ||||| ||||||||||||||||||||||||||||    
T  32148558 tgctcccaaagtcattgtatttctctataaatagagcttatatgtaacctaattatacatcacaagaaaataatataatcctctttcttctctctc 32148653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 42208874 - 42209075
Alignment:
Q  1 tggacatccaagggggagtgttatgaatattataagtggatgtctatatagcaattgggttattaggtcatactattagcttattgggccatattgtgct 100  Q
    |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| | ||||| | |||||||||||| ||||||||||||    
T  42208874 tggacatccaagggggagtgttatgaatattacaagtggatgtccatatagcaattgggttattggatcatattgttagcttattggaccatattgtgct 42208973  T
Q  101 tgctccccaagtcattgtatttctctataaatagagctcatatgtaacc------taattgtacataccaagagaataatataatcctctttcttctctc 194  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||      ||||| |||||  |||||||||||||||||| |||||||||| ||    
T  42208974 tgctccccaagtcattgtatttctctataaatagagctcatatgtaacctaattataattatacatcacaagagaataatataatcatctttcttctatc 42209073  T
Q  195 tc 196  Q
    ||    
T  42209074 tc 42209075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 119; E-Value: 5e-61
Query Start/End: Original strand, 18 - 196
Target Start/End: Complemental strand, 42167782 - 42167604
Alignment:
Q  18 gtgttatgaatattataagtggatgtctatatagcaattgggttattaggtcatactattagcttattgggccatattgtgcttgctccccaagtcattg 117  Q
    |||||||||||||||  |||||||||| |||||||||||| |||||| | ||||||| |||| |||||||||| ||||||||||||||||||||||||||    
T  42167782 gtgttatgaatattaccagtggatgtccatatagcaattgagttatttgatcatactgttagtttattgggccttattgtgcttgctccccaagtcattg 42167683  T
Q  118 tatttctctataaatagagctcatatgtaacctaattgtacataccaagagaataatataatcctctttcttctctctc 196  Q
    ||||||||||||||||||||||||||||||||||||| |||||  ||||| ||||| ||||||||||||||||| ||||    
T  42167682 tatttctctataaatagagctcatatgtaacctaattatacatcacaagaaaataacataatcctctttcttctatctc 42167604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 19 - 196
Target Start/End: Original strand, 44655598 - 44655775
Alignment:
Q  19 tgttatgaatattataagtggatgtctatatagcaattgggttattaggtcatactattagcttattgggccatattgtgcttgctccccaagtcattgt 118  Q
    |||||||||||||| ||||||||||| ||||||||||||||||||| | ||||||| ||||||||||||| | | ||||||||||| |||||||| ||||    
T  44655598 tgttatgaatattacaagtggatgtccatatagcaattgggttattggatcatactgttagcttattgggtcttgttgtgcttgctacccaagtctttgt 44655697  T
Q  119 atttctctataaatagagctcatatgtaacctaattgtacataccaagagaataatataatcctctttcttctctctc 196  Q
    ||||||||||||||  |||||||||||||||||||| |||||  |||||||||||||||||||||||| |||| ||||    
T  44655698 atttctctataaattaagctcatatgtaacctaattatacatcacaagagaataatataatcctctttattctatctc 44655775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 25499035 - 25499252
Alignment:
Q  1 tggacatccaagggggagtgttatgaatattataagtggatgtctatatagcaattgggttattaggtcatactattagcttattgggccatatt----- 95  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |||||||||||||||||||||| |||||||         
T  25499035 tggacatccaagggggagtgttatgaatattataagtggatgtccatatagcaattaggttattgggtcatactattagcttattggaccatattgtgct 25499134  T
Q  96 -----------------gtgcttgctccccaagtcattgtatttctctataaatagagctcatatgtaacctaattgtacataccaagagaataatataa 178  Q
                     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||  |||||||||||||||     
T  25499135 tgctccctaagtcattggtgcttgctccccaagtcattgtatttctctataaatagagctcatatgtaacctaatgatacatcacaagagaataatatat 25499234  T
Q  179 tcctctttcttctctctc 196  Q
    ||||||||||||| ||||    
T  25499235 tcctctttcttctatctc 25499252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 94; E-Value: 4e-46
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 26457025 - 26456872
Alignment:
Q  1 tggacatccaagggggagtgttatgaatattataagtggatgtctatatag-caattgggttattaggtcatactattagcttattgggccatattgtgc 99  Q
    |||||||||||||  || |||||||||||||||||||||||||| |||||| ||||||| ||||| ||| ||||||||||||||||| || |||||| ||    
T  26457025 tggacatccaaggaagaatgttatgaatattataagtggatgtccatataggcaattggattattgggttatactattagcttattgtgctatattgcgc 26456926  T
Q  100 ttgctccccaagtcattgtatttctctataaatagagctcatatgtaacctaat 153  Q
    |||||| |||| ||||||||||||||||||||||||||||||||||||| ||||    
T  26456925 ttgctctccaaatcattgtatttctctataaatagagctcatatgtaacttaat 26456872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 19 - 192
Target Start/End: Complemental strand, 38011845 - 38011676
Alignment:
Q  19 tgttatgaatattataagtggatgtctatatagcaattgggttattaggtcatactattagcttattgggccatattgtgcttgctccccaagtcattgt 118  Q
    |||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||| |||| |||||||||  |||| | || | |||||||||||||||    
T  38011845 tgttatgaatattagaagtggatgtccatataacaattgggttattaggtcatactcttagtttattgggctttattatactggatccccaagtcattgt 38011746  T
Q  119 atttctctataaatagagctcatatgtaacctaattgtacataccaagagaataatataatcctctttcttctc 192  Q
    ||| ||||||  ||||||||||||||||||||||||| | ||    ||||||||||||||||||||||||||||    
T  38011745 attactctatctatagagctcatatgtaacctaattgaatat----agagaataatataatcctctttcttctc 38011676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 19 - 196
Target Start/End: Original strand, 25493816 - 25494015
Alignment:
Q  19 tgttatgaatattataagtggatgtctatatagcaattgggttattaggtcatactattagcttattgggccatatt----------------------g 96  Q
    |||||||||||||||||||||||||| ||||||||||| ||||| | |||||||||||||||||||||| |||||||                      |    
T  25493816 tgttatgaatattataagtggatgtccatatagcaattaggttaatgggtcatactattagcttattggaccatattgtgcttgctccctaagtcattgg 25493915  T
Q  97 tgcttgctccccaagtcattgtatttctctataaatagagctcatatgtaacctaattgtacataccaagagaataatataatcctctttcttctctctc 196  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  |||||  ||||||||||||||| ||||||||||||| ||||    
T  25493916 tgcttgctccccaagtcattgtatttctctataaatagagctcatatgtaacataatgatacatcacaagagaataatatattcctctttcttctatctc 25494015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 22 - 139
Target Start/End: Complemental strand, 30027462 - 30027341
Alignment:
Q  22 tatgaatattataagtggatgtctatatagcaattgggtt----attaggtcatactattagcttattgggccatattgtgcttgctccccaagtcattg 117  Q
    ||||||||||||||||||||||||||||| |||||| |||    ||| ||||||  ||||| |  ||||| |||||||||| |||||||  |||||| ||    
T  30027462 tatgaatattataagtggatgtctatataacaattgagttattgattgggtcatgttattaacaaattggaccatattgtgtttgctcctaaagtcactg 30027363  T
Q  118 tatttctctataaatagagctc 139  Q
    ||||| ||||||||||||||||    
T  30027362 tatttttctataaatagagctc 30027341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 3 - 57
Target Start/End: Complemental strand, 42162431 - 42162377
Alignment:
Q  3 gacatccaagggggagtgttatgaatattataagtggatgtctatatagcaattg 57  Q
    ||||||||||||| |||||||||||||||| ||||||||||| ||||||||||||    
T  42162431 gacatccaaggggaagtgttatgaatattacaagtggatgtccatatagcaattg 42162377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 108 - 155
Target Start/End: Complemental strand, 11726553 - 11726506
Alignment:
Q  108 caagtcattgtatttctctataaatagagctcatatgtaacctaattg 155  Q
    ||||| ||||||||||||||||||||||||||| ||||||||| ||||    
T  11726553 caagttattgtatttctctataaatagagctcacatgtaaccttattg 11726506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 8248092 - 8248145
Alignment:
Q  1 tggacatccaagggggagtgttatgaatattataagtggatgtctatatagcaa 54  Q
    |||||||||||||||||||||||| |||||||  |||||||||| | |||||||    
T  8248092 tggacatccaagggggagtgttataaatattaatagtggatgtccaaatagcaa 8248145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 340470 - 340382
Alignment:
Q  1 tggacatccaagggggagtgttatgaatattataagtggatgtctatatagcaattgggttattaggtcatactattagcttattgggc 89  Q
    |||||||||||||||||||||||| |||||||  || ||||||| | ||| ||| || ||||||  | ||||||| ||| |||||||||    
T  340470 tggacatccaagggggagtgttataaatattaatagcggatgtccaaataacaaatgtgttattgagccatactactaggttattgggc 340382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 81
Target Start/End: Complemental strand, 11726661 - 11726601
Alignment:
Q  21 ttatgaatattataagtggatgtctatatagcaattgggttattaggtcatactattagct 81  Q
    ||||||||||||||||||||| || ||||| ||| ||||||||| || || ||||||||||    
T  11726661 ttatgaatattataagtggatatccatataacaactgggttattgggccacactattagct 11726601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 20125248 - 20125277
Alignment:
Q  1 tggacatccaagggggagtgttatgaatat 30  Q
    ||||||||||||||||||||||||||||||    
T  20125248 tggacatccaagggggagtgttatgaatat 20125277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 7578500 - 7578528
Alignment:
Q  1 tggacatccaagggggagtgttatgaata 29  Q
    |||||||||||||||||||||||||||||    
T  7578500 tggacatccaagggggagtgttatgaata 7578528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 153
Target Start/End: Complemental strand, 11726442 - 11726398
Alignment:
Q  109 aagtcattgtatttctctataaatagagctcatatgtaacctaat 153  Q
    |||||||||| ||||| ||||||||||| ||| ||||||||||||    
T  11726442 aagtcattgtgtttctttataaatagaggtcacatgtaacctaat 11726398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 160; Significance: 2e-85; HSPs: 28)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 22430329 - 22430524
Alignment:
Q  1 tggacatccaagggggagtgttatgaatattataagtggatgtctatatagcaattgggttattaggtcatactattagcttattgggccatattgtgct 100  Q
    |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| | ||||| | |||||||||||||||||||||||||    
T  22430329 tggacatccaagggggagtgttatgaatattacaagtggatgtccatatagcaattgggttattggatcatattgttagcttattgggccatattgtgct 22430428  T
Q  101 tgctccccaagtcattgtatttctctataaatagagctcatatgtaacctaattgtacataccaagagaataatataatcctctttcttctctctc 196  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||  ||||||||||||||||||||||||||||||||||    
T  22430429 tgctccccaagtcattgtatttctctataaatagagctcatatgtaacctaattatacatcacaagagaataatataatcctctttcttctctctc 22430524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 22435923 - 22436118
Alignment:
Q  1 tggacatccaagggggagtgttatgaatattataagtggatgtctatatagcaattgggttattaggtcatactattagcttattgggccatattgtgct 100  Q
    |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| | ||||| | |||||||||||||||||||||||||    
T  22435923 tggacatccaagggggagtgttatgaatattacaagtggatgtccatatagcaattgggttattggatcatattgttagcttattgggccatattgtgct 22436022  T
Q  101 tgctccccaagtcattgtatttctctataaatagagctcatatgtaacctaattgtacataccaagagaataatataatcctctttcttctctctc 196  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||  ||||||||||||||||||||||||||||||||||    
T  22436023 tgctccccaagtcattgtatttctctataaatagagctcatatgtaacctaattatacatcacaagagaataatataatcctctttcttctctctc 22436118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 156; E-Value: 4e-83
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 636263 - 636458
Alignment:
Q  1 tggacatccaagggggagtgttatgaatattataagtggatgtctatatagcaattgggttattaggtcatactattagcttattgggccatattgtgct 100  Q
    |||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||| | ||||| | |||||||||||||||||||||||||    
T  636263 tggacatccaagggggagtgttatgaatattacaagtggatgtccatataacaattgggttattggatcatattgttagcttattgggccatattgtgct 636362  T
Q  101 tgctccccaagtcattgtatttctctataaatagagctcatatgtaacctaattgtacataccaagagaataatataatcctctttcttctctctc 196  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||  ||||||||||||||||||||||||||||||||||    
T  636363 tgctccccaagtcattgtatttctctataaatagagctcatatgtaacctaattatacatcacaagagaataatataatcctctttcttctctctc 636458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 156; E-Value: 4e-83
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 43776972 - 43777167
Alignment:
Q  1 tggacatccaagggggagtgttatgaatattataagtggatgtctatatagcaattgggttattaggtcatactattagcttattgggccatattgtgct 100  Q
    |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| | ||||| | |||||||||||||||||||||||||    
T  43776972 tggacatccaagggggagtgttatgaatattacaagtggatgtccatatagcaattgggttattggatcatattgttagcttattgggccatattgtgct 43777071  T
Q  101 tgctccccaagtcattgtatttctctataaatagagctcatatgtaacctaattgtacataccaagagaataatataatcctctttcttctctctc 196  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||  |||||||||||||||||| |||||||||||||||    
T  43777072 tgctccccaagtcattgtatttctctataaatagagctcatatgtaacctaattatacatcacaagagaataatataatcatctttcttctctctc 43777167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 7910141 - 7909946
Alignment:
Q  1 tggacatccaagggggagtgttatgaatattataagtggatgtctatatagcaattgggttattaggtcatactattagcttattgggccatattgtgct 100  Q
    |||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||| | ||||| | |||||||||||||||||||||||||    
T  7910141 tggacatccaagggggagtgttatgaatattacaagtggatgtccatataacaattgggttattggatcatattgttagcttattgggccatattgtgct 7910042  T
Q  101 tgctccccaagtcattgtatttctctataaatagagctcatatgtaacctaattgtacataccaagagaataatataatcctctttcttctctctc 196  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||  |||||||||||||||||| |||||||||||||||    
T  7910041 tgctccccaagtcattgtatttctctataaatagagctcatatgtaacctaattatacatcacaagagaataatataatcatctttcttctctctc 7909946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 144; E-Value: 6e-76
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 14898764 - 14898959
Alignment:
Q  1 tggacatccaagggggagtgttatgaatattataagtggatgtctatatagcaattgggttattaggtcatactattagcttattgggccatattgtgct 100  Q
    |||||||||||||||||||||||||||||||| | ||||||||| ||||||||||||||||||| | ||||| | |||||||||||| ||||||||||||    
T  14898764 tggacatccaagggggagtgttatgaatattacaggtggatgtccatatagcaattgggttattggatcatattgttagcttattggaccatattgtgct 14898863  T
Q  101 tgctccccaagtcattgtatttctctataaatagagctcatatgtaacctaattgtacataccaagagaataatataatcctctttcttctctctc 196  Q
    ||||||| || ||||||||||||||||||||||||||||||||||||||||||| |||||  ||||||||||||||||||||||||||||||||||    
T  14898864 tgctccctaaatcattgtatttctctataaatagagctcatatgtaacctaattatacatcacaagagaataatataatcctctttcttctctctc 14898959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 138; E-Value: 2e-72
Query Start/End: Original strand, 19 - 196
Target Start/End: Original strand, 630730 - 630907
Alignment:
Q  19 tgttatgaatattataagtggatgtctatatagcaattgggttattaggtcatactattagcttattgggccatattgtgcttgctccccaagtcattgt 118  Q
    |||||||||||||| ||||||||||| ||||| ||||||||||||| | ||||| | |||||||||||||||||||||||||||||||||||||||||||    
T  630730 tgttatgaatattacaagtggatgtccatataacaattgggttattggatcatattgttagcttattgggccatattgtgcttgctccccaagtcattgt 630829  T
Q  119 atttctctataaatagagctcatatgtaacctaattgtacataccaagagaataatataatcctctttcttctctctc 196  Q
    |||||||||||||||||||||||||||||||||||| |||||  ||||||||||||||||||||||||||||||||||    
T  630830 atttctctataaatagagctcatatgtaacctaattatacatcacaagagaataatataatcctctttcttctctctc 630907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 17 - 196
Target Start/End: Complemental strand, 7917580 - 7917401
Alignment:
Q  17 agtgttatgaatattataagtggatgtctatatagcaattgggttattaggtcatactattagcttattgggccatattgtgcttgctccccaagtcatt 116  Q
    |||||||||||||||| ||||||||||| ||||| ||||||||||||| | ||||| | |||||||||||||||||||||||||||||||||||||||||    
T  7917580 agtgttatgaatattacaagtggatgtccatataacaattgggttattggatcatattgttagcttattgggccatattgtgcttgctccccaagtcatt 7917481  T
Q  117 gtatttctctataaatagagctcatatgtaacctaattgtacataccaagagaataatataatcctctttcttctctctc 196  Q
    |||||||||||||||||||||||||||||||||||||| |||||  |||||||||||||||||| |||||||||||||||    
T  7917480 gtatttctctataaatagagctcatatgtaacctaattatacatcacaagagaataatataatcttctttcttctctctc 7917401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 19 - 196
Target Start/End: Original strand, 22424977 - 22425154
Alignment:
Q  19 tgttatgaatattataagtggatgtctatatagcaattgggttattaggtcatactattagcttattgggccatattgtgcttgctccccaagtcattgt 118  Q
    |||||||||||||| ||||||||||| ||||||||| ||||||||| | ||||| | |||||||||||||||||||||||||||||||||||||||||||    
T  22424977 tgttatgaatattacaagtggatgtccatatagcaaatgggttattggatcatattgttagcttattgggccatattgtgcttgctccccaagtcattgt 22425076  T
Q  119 atttctctataaatagagctcatatgtaacctaattgtacataccaagagaataatataatcctctttcttctctctc 196  Q
    ||||||||||||||||||||||||||||||| |||| |||||  ||||||||||||||||||||||||||||||||||    
T  22425077 atttctctataaatagagctcatatgtaacccaattatacatcacaagagaataatataatcctctttcttctctctc 22425154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 1525623 - 1525824
Alignment:
Q  1 tggacatccaagggggagtgttatgaatattataagtggatgtctatatagcaattgggttattaggtcatactattagcttattgggccatattgtgct 100  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| | ||||||| |||||||||| || |||||||||||    
T  1525623 tggacatccaagggggagtgttatgaatattataagtggatgtccatatagaaattgggttattggatcatactgttagcttattaggtcatattgtgct 1525722  T
Q  101 tgctccccaagtcattgtatttctc------tataaatagagctcatatgtaacctaattgtacataccaagagaataatataatcctctttcttctctc 194  Q
    |||||||||||||||||||||||||      |||||||||||||||||||||||||||||  | ||||||| | ||||||||||||||||||||||||||    
T  1525723 tgctccccaagtcattgtatttctctataaatataaatagagctcatatgtaacctaattagagataccaaaaaaataatataatcctctttcttctctc 1525822  T
Q  195 tc 196  Q
    ||    
T  1525823 tc 1525824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 17 - 196
Target Start/End: Original strand, 14893223 - 14893406
Alignment:
Q  17 agtgttatgaatattataagtggatgtctatatagcaattgggttattaggtcatactattagcttattgggccatatt----gtgcttgctccccaagt 112  Q
    |||||||||||||||| ||||||||||| ||||||||||||||||||| | ||||| | ||||||||||||||||||||    |||||||||||||||||    
T  14893223 agtgttatgaatattacaagtggatgtccatatagcaattgggttattggatcatattgttagcttattgggccatatttattgtgcttgctccccaagt 14893322  T
Q  113 cattgtatttctctataaatagagctcatatgtaacctaattgtacataccaagagaataatataatcctctttcttctctctc 196  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||  ||||||||||||||||||||||||||||||||||    
T  14893323 cattgtatttctctataaatagagctcatatgtaacctaattatacatcacaagagaataatataatcctctttcttctctctc 14893406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 19 - 196
Target Start/End: Original strand, 43771464 - 43771639
Alignment:
Q  19 tgttatgaatattataagtggatgtctatatagcaattgggttattaggtcatactattagcttattgggccatattgtgcttgctccccaagtcattgt 118  Q
    |||||||||||||| ||||||||||| ||||||||||||||||||||| ||||| | |||||||||||||||||||||||||||||||||||||||||||    
T  43771464 tgttatgaatattacaagtggatgtccatatagcaattgggttattagatcatattgttagcttattgggccatattgtgcttgctccccaagtcattgt 43771563  T
Q  119 atttctctataaatagagctcatatgtaacctaattgtacataccaagagaataatataatcctctttcttctctctc 196  Q
    ||||||||||||||||||||||||  |||||||||| |||||  |||||||||||||||||| |||||||||||||||    
T  43771564 atttctctataaatagagctcata--taacctaattatacatcacaagagaataatataatcatctttcttctctctc 43771639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 19 - 196
Target Start/End: Original strand, 26694152 - 26694329
Alignment:
Q  19 tgttatgaatattataagtggatgtctatatagcaattgggttattaggtcatactattagcttattgggccatattgtgcttgctccccaagtcattgt 118  Q
    |||||||||||||| ||||||||||| ||||||||||||||||||| | ||||||| |||| ||||||  || |||||||||||||||||||||||||||    
T  26694152 tgttatgaatattacaagtggatgtccatatagcaattgggttattggatcatactgttagtttattgaaccttattgtgcttgctccccaagtcattgt 26694251  T
Q  119 atttctctataaatagagctcatatgtaacctaattgtacataccaagagaataatataatcctctttcttctctctc 196  Q
    |||||||||||||||||||||||||||||||||||| |||||  ||||||||||| |||||| |||||||||| ||||    
T  26694252 atttctctataaatagagctcatatgtaacctaattatacatcacaagagaataacataatcttctttcttctatctc 26694329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 117; E-Value: 8e-60
Query Start/End: Original strand, 19 - 196
Target Start/End: Original strand, 1519141 - 1519322
Alignment:
Q  19 tgttatgaatattataagtggatgtctatatagcaattgggttattaggtcatactattagcttattgggccatattgtgcttgctccccaagtcat--- 115  Q
    ||||||||||||||||||||||| || ||||||||||||| ||||| | | ||| | ||||||||||||| ||||||||||||||||||||||||||       
T  1519141 tgttatgaatattataagtggatatccatatagcaattggattattggattatattgttagcttattgggtcatattgtgcttgctccccaagtcattca 1519240  T
Q  116 -tgtatttctctataaatagagctcatatgtaacctaattgtacataccaagagaataatataatcctctttcttctctctc 196  Q
     |||||||||||||||||||||||||||||||||||||||  | ||||||||||||||||||||||||||||||||||||||    
T  1519241 ttgtatttctctataaatagagctcatatgtaacctaattagagataccaagagaataatataatcctctttcttctctctc 1519322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 92 - 196
Target Start/End: Original strand, 26702321 - 26702425
Alignment:
Q  92 tattgtgcttgctccccaagtcattgtatttctctataaatagagctcatatgtaacctaattgtacataccaagagaataatataatcctctttcttct 191  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||  ||||||||||| |||||| ||||||||||    
T  26702321 tattgtgcttgctccccaagtcattgtatttctctataaatagagctcatatgtaacctaattatacatcacaagagaataacataatcttctttcttct 26702420  T
Q  192 ctctc 196  Q
     ||||    
T  26702421 atctc 26702425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 19 - 117
Target Start/End: Complemental strand, 19052526 - 19052428
Alignment:
Q  19 tgttatgaatattataagtggatgtctatatagcaattgggttattaggtcatactattagcttattgggccatattgtgcttgctccccaagtcattg 117  Q
    ||||||| |||||||||||| || || |||||||||||| ||||||  ||||||||||||||||||||| | |||||||||||||||||||||||||||    
T  19052526 tgttatggatattataagtgaatatccatatagcaattgagttattgagtcatactattagcttattggacgatattgtgcttgctccccaagtcattg 19052428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 19437714 - 19437626
Alignment:
Q  1 tggacatccaagggggagtgttatgaatattataagtggatgtctatatagcaattgggttattaggtcatactattagcttattgggc 89  Q
    |||||||||||||||||||||||| |||||||  |||||||||| | ||||||| || |||| | || ||||||| ||| |||||||||    
T  19437714 tggacatccaagggggagtgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatactactaggttattgggc 19437626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 24053465 - 24053377
Alignment:
Q  1 tggacatccaagggggagtgttatgaatattataagtggatgtctatatagcaattgggttattaggtcatactattagcttattgggc 89  Q
    |||||||| ||||||||||||||| |||||||  |||||||||| | ||||||| || |||||| || ||||||| ||| |||||||||    
T  24053465 tggacatctaagggggagtgttataaatattaatagtggatgtccaaatagcaaatgtgttattgggccatactactaggttattgggc 24053377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 5836255 - 5836220
Alignment:
Q  1 tggacatccaagggggagtgttatgaatattataag 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  5836255 tggacatccaagggggagtgttatgaatattataag 5836220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 112 - 157
Target Start/End: Complemental strand, 19052411 - 19052365
Alignment:
Q  112 tcattgtatttctctataaatagagctcata-tgtaacctaattgta 157  Q
    ||||||||||||||||||||||||||||||| | |||||||||||||    
T  19052411 tcattgtatttctctataaatagagctcatactataacctaattgta 19052365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 19 - 89
Target Start/End: Original strand, 8872239 - 8872310
Alignment:
Q  19 tgttatgaatattataagt-ggatgtctatatagcaattgggttattaggtcatactattagcttattgggc 89  Q
    ||||||||||||||||||| |||| || ||||| ||| ||||||| |||| ||||||||| | |||||||||    
T  8872239 tgttatgaatattataagtgggatatccatatatcaaatgggttaataggccatactatttgattattgggc 8872310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 4 - 89
Target Start/End: Complemental strand, 43287567 - 43287482
Alignment:
Q  4 acatccaagggggagtgttatgaatattataagtggatgtctatatagcaattgggttattaggtcatactattagcttattgggc 89  Q
    |||||||||||| |||||||| || ||||  ||| |||||| | ||||||| || |||||| || ||||||| ||| |||||||||    
T  43287567 acatccaaggggaagtgttataaacattaatagtagatgtccaaatagcaaatgtgttattgggccatactactaggttattgggc 43287482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 7385030 - 7385002
Alignment:
Q  1 tggacatccaagggggagtgttatgaata 29  Q
    |||||||||||||||||||||||||||||    
T  7385030 tggacatccaagggggagtgttatgaata 7385002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 172
Target Start/End: Original strand, 14188410 - 14188470
Alignment:
Q  112 tcattgtatttctctataaatagagctcatatgtaacctaattgtacataccaagagaata 172  Q
    |||||||| ||||||||||||||||  || ||||||| ||||||||||   ||||||||||    
T  14188410 tcattgtacttctctataaatagagaccacatgtaacataattgtacaccacaagagaata 14188470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 16443506 - 16443478
Alignment:
Q  1 tggacatccaagggggagtgttatgaata 29  Q
    |||||||||||||||||||||||||||||    
T  16443506 tggacatccaagggggagtgttatgaata 16443478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 17319693 - 17319665
Alignment:
Q  1 tggacatccaagggggagtgttatgaata 29  Q
    |||||||||||||||||||||||||||||    
T  17319693 tggacatccaagggggagtgttatgaata 17319665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 19912244 - 19912272
Alignment:
Q  1 tggacatccaagggggagtgttatgaata 29  Q
    |||||||||||||||||||||||||||||    
T  19912244 tggacatccaagggggagtgttatgaata 19912272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 89
Target Start/End: Complemental strand, 25445224 - 25445148
Alignment:
Q  13 ggggagtgttatgaatattataagtggatgtctatatagcaattgggttattaggtcatactattagcttattgggc 89  Q
    |||||||||||| |||||||  |||||||||| | ||||||| || |||| | || ||||||| ||| |||||||||    
T  25445224 ggggagtgttataaatattaatagtggatgtccaaatagcaaatgtgttaatgggccatactactaggttattgggc 25445148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 156; Significance: 4e-83; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 156; E-Value: 4e-83
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 28367159 - 28366964
Alignment:
Q  1 tggacatccaagggggagtgttatgaatattataagtggatgtctatatagcaattgggttattaggtcatactattagcttattgggccatattgtgct 100  Q
    |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| |||||| | ||||| | |||||||||||||||||||||||||    
T  28367159 tggacatccaagggggagtgttatgaatattacaagtggatgtcaatatagcaattgagttattggatcatattgttagcttattgggccatattgtgct 28367060  T
Q  101 tgctccccaagtcattgtatttctctataaatagagctcatatgtaacctaattgtacataccaagagaataatataatcctctttcttctctctc 196  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||  ||||||||||||||||||||||||||||||||||    
T  28367059 tgctccccaagtcattgtatttctctataaatagagctcatatgtaacctaattatacatcacaagagaataatataatcctctttcttctctctc 28366964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 19 - 195
Target Start/End: Complemental strand, 1536715 - 1536539
Alignment:
Q  19 tgttatgaatattataagtggatgtctatatagcaattgggttattaggtcatactattagcttattgggccatattgtgcttgctccccaagtcattgt 118  Q
    |||||| ||||||||||||||||||| ||||||||||||||||||| | ||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  1536715 tgttataaatattataagtggatgtccatatagcaattgggttattggatcatactgttagcttattgggccatattgtgcttgctccccaagtcattgt 1536616  T
Q  119 atttctctataaatagagctcatatgtaacctaattgtacataccaagagaataatataatcctctttcttctctct 195  Q
    ||||||||||||||||||||||||||||||||||||  | |||||||||||||||||||||||||||||||||||||    
T  1536615 atttctctataaatagagctcatatgtaacctaattagagataccaagagaataatataatcctctttcttctctct 1536539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 19 - 196
Target Start/End: Complemental strand, 28375881 - 28375704
Alignment:
Q  19 tgttatgaatattataagtggatgtctatatagcaattgggttattaggtcatactattagcttattgggccatattgtgcttgctccccaagtcattgt 118  Q
    |||||||||||||| ||||||||||| |||||||||||| |||||| | ||||| | |||||||||||||||||||||||||||||||||||||||||||    
T  28375881 tgttatgaatattacaagtggatgtccatatagcaattgagttattggatcatattgttagcttattgggccatattgtgcttgctccccaagtcattgt 28375782  T
Q  119 atttctctataaatagagctcatatgtaacctaattgtacataccaagagaataatataatcctctttcttctctctc 196  Q
    |||||||||||||||||||||||||||||||||||| |||||  |||||||||||||||||| |||||||||||||||    
T  28375781 atttctctataaatagagctcatatgtaacctaattatacatcacaagagaataatataatcttctttcttctctctc 28375704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 18 - 196
Target Start/End: Complemental strand, 30963333 - 30963157
Alignment:
Q  18 gtgttatgaatattataagtggatgtctatatagcaattgggttattaggtcatactattagcttattgggccatattgtgcttgctccccaagtcattg 117  Q
    ||||||||||||||||||||||||||| ||||| ||||||||||||| | ||||| | |||||||||||| |||||||||||||||||||||||||||||    
T  30963333 gtgttatgaatattataagtggatgtccatataacaattgggttattggatcatattgttagcttattggaccatattgtgcttgctccccaagtcattg 30963234  T
Q  118 tatttctctataaatagagctcatatgtaacctaattgtacataccaagagaataatataatcctctttcttctctctc 196  Q
    |||||||||||||||||||||||||  |||| ||||| |||||  |||||||||||||||||| |||||||||||||||    
T  30963233 tatttctctataaatagagctcata--taacttaattatacatcacaagagaataatataatcatctttcttctctctc 30963157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 190
Target Start/End: Complemental strand, 34648108 - 34647923
Alignment:
Q  1 tggacatccaagggggagtgttatgaatattataagtggatg----tctatatagcaattgggttattaggtcatactattagcttattgggccatattg 96  Q
    |||||||||||||||||| |||||||||||||||||||||||    || ||||||||||||||||||| ||| ||||||||||        || ||||||    
T  34648108 tggacatccaagggggagagttatgaatattataagtggatggatgtccatatagcaattgggttattgggttatactattag--------gctatattg 34648017  T
Q  97 tgcttgctccccaagtcattgtatttctctataaatagagctcatatgtaacctaattgtacataccaagagaataatataatcctctttcttc 190  Q
    |||||||||||||| ||||||||||||| ||||||| |||||||||||||||||||||||||||  ||||||||||||| |||| ||| |||||    
T  34648016 tgcttgctccccaaatcattgtatttctgtataaattgagctcatatgtaacctaattgtacatcacaagagaataatagaatcatctctcttc 34647923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 82; E-Value: 6e-39
Query Start/End: Original strand, 76 - 196
Target Start/End: Complemental strand, 30927484 - 30927366
Alignment:
Q  76 ttagcttattgggccatattgtgcttgctccccaagtcattgtatttctctataaatagagctcatatgtaacctaattgtacataccaagagaataata 175  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||| ||||| |||||  ||| |||||||||    
T  30927484 ttagcttattggaccatattgtgcttgctccccaagtcattgtatttctctataaatagagctcata--taacttaattatacatcacaaaagaataata 30927387  T
Q  176 taatcctctttcttctctctc 196  Q
    ||||| |||||||||||||||    
T  30927386 taatcatctttcttctctctc 30927366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 30957775 - 30957712
Alignment:
Q  1 tggacatccaagggggagtgttatgaatattataagtggatgtctatatagcaattgggttatt 64  Q
    |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||    
T  30957775 tggacatccaagggggagtgttatgaatattacaagtggatgtccatatagcaattgggttatt 30957712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 108 - 196
Target Start/End: Complemental strand, 14664064 - 14663981
Alignment:
Q  108 caagtcattgtatttctctataaatagagctcatatgtaacctaattgtacataccaagagaataatataatcctctttcttctctctc 196  Q
    |||||||||||||||||||||||||||||||||     |||||||||  | |||||||||||||||||||||| |||||||||||||||    
T  14664064 caagtcattgtatttctctataaatagagctca-----aacctaattagagataccaagagaataatataatcttctttcttctctctc 14663981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 14664118 - 14664070
Alignment:
Q  16 gagtgttatgaatattataagtggatgtctatatagcaattgggttatt 64  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||    
T  14664118 gagtgttatgaatattataagtggatgtccatatagcaattgggttatt 14664070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 35264717 - 35264629
Alignment:
Q  1 tggacatccaagggggagtgttatgaatattataagtggatgtctatatagcaattgggttattaggtcatactattagcttattgggc 89  Q
    |||||||||||||||||||||||| |||||||  |||||||||| | ||||||| || |||| | || ||||||||||| |||||||||    
T  35264717 tggacatccaagggggagtgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatactattaggttattgggc 35264629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 25365571 - 25365483
Alignment:
Q  1 tggacatccaagggggagtgttatgaatattataagtggatgtctatatagcaattgggttattaggtcatactattagcttattgggc 89  Q
    |||||||||||||||||||||||| |||||||  |||||||||  | ||||||| || |||||| || ||||||| ||| |||||||||    
T  25365571 tggacatccaagggggagtgttataaatattaatagtggatgttcaaatagcaaatgtgttattgggccatactactaggttattgggc 25365483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 6 - 64
Target Start/End: Original strand, 24111219 - 24111277
Alignment:
Q  6 atccaagggggagtgttatgaatattataagtggatgtctatatagcaattgggttatt 64  Q
    |||||||||| |||||||||||||||||||||||| ||| || |||||||| |||||||    
T  24111219 atccaaggggaagtgttatgaatattataagtggacgtccatttagcaattaggttatt 24111277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 23053556 - 23053471
Alignment:
Q  1 tggacatccaagggggagtgttatgaatattataagtggatgtctatatagcaattgggttattaggtcatactattagcttattg 86  Q
    |||||||||||||||||||||||| |||||||  |||||||||| | ||||||| || |||| | || ||||||| ||| ||||||    
T  23053556 tggacatccaagggggagtgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatactactaggttattg 23053471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 21171364 - 21171276
Alignment:
Q  1 tggacatccaagggggagtgttatgaatattataagtggatgtctatatagcaattgggttattaggtcatactattagcttattgggc 89  Q
    |||||||||||||||||||||||| |||||||  |||||||||| | || |||| || |||| | || ||||||| ||| |||||||||    
T  21171364 tggacatccaagggggagtgttataaatattaatagtggatgtccaaatggcaaatgtgttagtgggccatactactaggttattgggc 21171276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 112 - 189
Target Start/End: Original strand, 23775275 - 23775352
Alignment:
Q  112 tcattgtatttctctataaatagagctcatatgtaacctaattgtacataccaagagaataatataatcctctttctt 189  Q
    |||||||| |||||||||||||||| ||| ||||||  |||||||||||   ||||||||| || |||| ||||||||    
T  23775275 tcattgtacttctctataaatagagatcacatgtaagataattgtacatcagaagagaatattaaaatcatctttctt 23775352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 112 - 189
Target Start/End: Original strand, 23862229 - 23862306
Alignment:
Q  112 tcattgtatttctctataaatagagctcatatgtaacctaattgtacataccaagagaataatataatcctctttctt 189  Q
    |||||||| |||||||||||||||| ||| ||||||  |||||||||||   ||||||||| || |||| ||||||||    
T  23862229 tcattgtacttctctataaatagagatcacatgtaagataattgtacatcagaagagaatattaaaatcatctttctt 23862306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 112 - 196
Target Start/End: Complemental strand, 26459357 - 26459273
Alignment:
Q  112 tcattgtatttctctataaatagagctcatatgtaacctaattgtacataccaagagaataatataatcctctttcttctctctc 196  Q
    ||||||||  |||| |||||||||| ||| ||||||  ||||||||||   ||||| ||||||||||| |||| |||||||||||    
T  26459357 tcattgtacgtctccataaatagagatcacatgtaatataattgtacactacaagaaaataatataattctctctcttctctctc 26459273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 16675546 - 16675620
Alignment:
Q  1 tggacatccaagggggagtgttatgaatattataagtggatgtctatatagcaattgggttattaggtcatacta 75  Q
    |||||||||||||||||||||||| |||||||  |||| ||||| | ||||||| || |||| | || |||||||    
T  16675546 tggacatccaagggggagtgttataaatattaatagtgaatgtccaaatagcaaatgtgttagtgggccatacta 16675620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 114 - 179
Target Start/End: Complemental strand, 54502 - 54437
Alignment:
Q  114 attgtatttctctataaatagagctcatatgtaacctaattgtacataccaagagaataatataat 179  Q
    ||||||||||| ||||||||||| ||| |||||||  |||||||||   |||| ||||||||||||    
T  54502 attgtatttctatataaatagagttcacatgtaacacaattgtacaacacaagtgaataatataat 54437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 156; Significance: 4e-83; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 156; E-Value: 4e-83
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 27179148 - 27178953
Alignment:
Q  1 tggacatccaagggggagtgttatgaatattataagtggatgtctatatagcaattgggttattaggtcatactattagcttattgggccatattgtgct 100  Q
    |||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||| | ||||| | |||||||||||||||||||||||||    
T  27179148 tggacatccaagggggagtgttatgaatattacaagtggatgtccatataacaattgggttattggatcatattgttagcttattgggccatattgtgct 27179049  T
Q  101 tgctccccaagtcattgtatttctctataaatagagctcatatgtaacctaattgtacataccaagagaataatataatcctctttcttctctctc 196  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||  ||||||||||||||||||||||||||||||||||    
T  27179048 tgctccccaagtcattgtatttctctataaatagagctcatatgtaacctaattatacatcacaagagaataatataatcctctttcttctctctc 27178953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 4 - 196
Target Start/End: Original strand, 15716608 - 15716800
Alignment:
Q  4 acatccaagggggagtgttatgaatattataagtggatgtctatatagcaattgggttattaggtcatactattagcttattgggccatattgtgcttgc 103  Q
    ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| | ||||| | ||||||||||||||||||||||||||||    
T  15716608 acatccaagggggagtgttatgaatattacaagtggatgtccatatagcaattgggttattggatcatattgttagcttattgggccatattgtgcttgc 15716707  T
Q  104 tccccaagtcattgtatttctctataaatagagctcatatgtaacctaattgtacataccaagagaataatataatcctctttcttctctctc 196  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||  |||||||||||||||||| |||||||||||||||    
T  15716708 tccccaagtcattgtatttctctataaatagagctcatatgtaacgtaattatacatcacaagagaataatataatcttctttcttctctctc 15716800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 16 - 196
Target Start/End: Complemental strand, 27195134 - 27194954
Alignment:
Q  16 gagtgttatgaatattataagtggatgtctatatagcaattgggttattaggtcatactattagcttattgggccatattgtgcttgctccccaagtcat 115  Q
    ||||||||||||||||| ||||||||||||||||| ||||||||||||| | ||||| | ||||||||||||||||||||||||||||||||||||||||    
T  27195134 gagtgttatgaatattacaagtggatgtctatataacaattgggttattggatcatattgttagcttattgggccatattgtgcttgctccccaagtcat 27195035  T
Q  116 tgtatttctctataaatagagctcatatgtaacctaattgtacataccaagagaataatataatcctctttcttctctctc 196  Q
    ||||||||||||||||||||||||||||||||||||||| |||||  ||||||||||||||||||||||||||||||||||    
T  27195034 tgtatttctctataaatagagctcatatgtaacctaattatacatcacaagagaataatataatcctctttcttctctctc 27194954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 138; E-Value: 2e-72
Query Start/End: Original strand, 19 - 196
Target Start/End: Complemental strand, 26711637 - 26711460
Alignment:
Q  19 tgttatgaatattataagtggatgtctatatagcaattgggttattaggtcatactattagcttattgggccatattgtgcttgctccccaagtcattgt 118  Q
    |||||||||||||| ||||||||||| ||||||||||||||||||| | ||||| | |||||||||||||||||||||||||||||||||||||||||||    
T  26711637 tgttatgaatattacaagtggatgtccatatagcaattgggttattggatcatattgttagcttattgggccatattgtgcttgctccccaagtcattgt 26711538  T
Q  119 atttctctataaatagagctcatatgtaacctaattgtacataccaagagaataatataatcctctttcttctctctc 196  Q
    ||||||||||||||||||||||||||||||||||||  ||||  ||||||||||||||||||||||||||||||||||    
T  26711537 atttctctataaatagagctcatatgtaacctaattagacatcacaagagaataatataatcctctttcttctctctc 26711460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 19 - 196
Target Start/End: Complemental strand, 33498579 - 33498402
Alignment:
Q  19 tgttatgaatattataagtggatgtctatatagcaattgggttattaggtcatactattagcttattgggccatattgtgcttgctccccaagtcattgt 118  Q
    |||||||||||||| ||||||||||| |||||||||||||||| || | ||||| | |||||||||||||| ||||||||||||||||||||||||||||    
T  33498579 tgttatgaatattacaagtggatgtccatatagcaattgggttgttggatcatatttttagcttattgggctatattgtgcttgctccccaagtcattgt 33498480  T
Q  119 atttctctataaatagagctcatatgtaacctaattgtacataccaagagaataatataatcctctttcttctctctc 196  Q
    |||||||||||||| ||||| ||||||||||||||| |||||  ||||||||||||||||||||||||||||||||||    
T  33498479 atttctctataaatggagcttatatgtaacctaattatacatcacaagagaataatataatcctctttcttctctctc 33498402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 19 - 196
Target Start/End: Original strand, 15711042 - 15711219
Alignment:
Q  19 tgttatgaatattataagtggatgtctatatagcaattgggttattaggtcatactattagcttattgggccatattgtgcttgctccccaagtcattgt 118  Q
    |||||||||||||| ||||||||||| ||||||||||||||||||| | ||||| | |||| ||||||| ||||||||||||||||||||||||||||||    
T  15711042 tgttatgaatattacaagtggatgtccatatagcaattgggttattggatcatattgttagtttattggaccatattgtgcttgctccccaagtcattgt 15711141  T
Q  119 atttctctataaatagagctcatatgtaacctaattgtacataccaagagaataatataatcctctttcttctctctc 196  Q
    |||||| ||||||||||||||||||||||| ||||| |||||  |||||||||||||||||| |||||||||||||||    
T  15711142 atttctttataaatagagctcatatgtaacgtaattatacatcacaagagaataatataatcttctttcttctctctc 15711219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 33493115 - 33492968
Alignment:
Q  1 tggacatccaagggggagtgttatgaatattataagtggatgtctatatagcaattgggttattaggtcatactattagcttattgggccatattgtgct 100  Q
    |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| ||| || | ||||| | |||||||||||||| ||||||||||    
T  33493115 tggacatccaagggggagtgttatgaatattacaagtggatgtccatatagcaattgagttgttggatcatattgttagcttattgggctatattgtgct 33493016  T
Q  101 tgctccccaagtcattgtatttctctataaatagagctcatatgtaac 148  Q
    ||||||| |||||||||||||||||||||||||||||| |||||||||    
T  33493015 tgctccctaagtcattgtatttctctataaatagagcttatatgtaac 33492968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 1 - 190
Target Start/End: Original strand, 17721699 - 17721909
Alignment:
Q  1 tggacatccaagggggagtgttatgaatattataagtggatgtctatatagcaattgggttattaggtcatactattagcttattgggccatattgtgct 100  Q
    ||||||| |||||||||||||||||||||||||||||||||||| || ||  |||| ||||||| |||||||||| ||||||||||||| |||||||| |    
T  17721699 tggacattcaagggggagtgttatgaatattataagtggatgtccatgtaagaatttggttattgggtcatactactagcttattgggctatattgtgtt 17721798  T
Q  101 tgc---------------------tccccaagtcattgtatttctctataaatagagctcatatgtaacctaattgtacataccaagagaataatataat 179  Q
    |||                     ||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||  |||||||||||||||||    
T  17721799 tgctcccaagtcattggtgtttgttccccaagtcattatatttctctataaatagagctcgtatgtaacctaattgtacatcacaagagaataatataat 17721898  T
Q  180 cctctttcttc 190  Q
    | ||| |||||    
T  17721899 catctctcttc 17721909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 35 - 117
Target Start/End: Complemental strand, 16498889 - 16498808
Alignment:
Q  35 agtggatgtctatatagcaattgggttattaggtcatactattagcttattgggccatattgtgcttgctccccaagtcattg 117  Q
    |||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||    
T  16498889 agtggatgtccatatagcaattgggttattaggttatactattagcttattgggccatattgtgcttgct-cccaagtcattg 16498808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 54 - 180
Target Start/End: Complemental strand, 3344002 - 3343872
Alignment:
Q  54 attgggttattaggtcatactattagcttattgggccatattgtgcttgctccc----caagtcattgtatttctctataaatagagctcatatgtaacc 149  Q
    ||||||||||| ||| ||||||||||||||||||| ||||||||||||||| ||    ||||||||||||||||| |||||||||| || ||||||||||    
T  3344002 attgggttattgggttatactattagcttattgggtcatattgtgcttgcttccttcccaagtcattgtatttctatataaatagaacttatatgtaacc 3343903  T
Q  150 taattgtacataccaagagaataatataatc 180  Q
    ||||| || ||| ||||| ||||||| ||||    
T  3343902 taattatatataacaagaaaataatagaatc 3343872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 107 - 155
Target Start/End: Complemental strand, 16498796 - 16498748
Alignment:
Q  107 ccaagtcattgtatttctctataaatagagctcatatgtaacctaattg 155  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||    
T  16498796 ccaagtcattgtatctctctataaatagagctcatatgtaacctaattg 16498748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 37356910 - 37356822
Alignment:
Q  1 tggacatccaagggggagtgttatgaatattataagtggatgtctatatagcaattgggttattaggtcatactattagcttattgggc 89  Q
    |||||||||||||||||||||||| |||||||  |||||||||| | ||||||| || |||||| || ||||||| ||| |||||||||    
T  37356910 tggacatccaagggggagtgttataaatattaatagtggatgtccaaatagcaaatgtgttattgggccatactactaggttattgggc 37356822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 18535156 - 18535068
Alignment:
Q  1 tggacatccaagggggagtgttatgaatattataagtggatgtctatatagcaattgggttattaggtcatactattagcttattgggc 89  Q
    |||||||||||||||||||||||| |||||||  |||||||||| | ||||||| || |||| | || ||||||| ||| |||||||||    
T  18535156 tggacatccaagggggagtgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatactactaggttattgggc 18535068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 31093124 - 31093036
Alignment:
Q  1 tggacatccaagggggagtgttatgaatattataagtggatgtctatatagcaattgggttattaggtcatactattagcttattgggc 89  Q
    |||||||||||||||||||||||| |||||||  |||||||||| | ||||||| || |||| | || ||||||| ||| |||||||||    
T  31093124 tggacatccaagggggagtgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatactactaggttattgggc 31093036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 144 - 196
Target Start/End: Complemental strand, 33491559 - 33491507
Alignment:
Q  144 gtaacctaattgtacataccaagagaataatataatcctctttcttctctctc 196  Q
    ||||||||||| |||||  ||||||||||||||||||||||||||||||||||    
T  33491559 gtaacctaattatacatcacaagagaataatataatcctctttcttctctctc 33491507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 104 - 159
Target Start/End: Original strand, 9088672 - 9088727
Alignment:
Q  104 tccccaagtcattgtatttctctataaatagagctcatatgtaacctaattgtaca 159  Q
    ||||||| ||||| ||||||||||||||||||||| |||||||| |||||||||||    
T  9088672 tccccaaatcattatatttctctataaatagagcttatatgtaatctaattgtaca 9088727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 112 - 180
Target Start/End: Complemental strand, 22575932 - 22575864
Alignment:
Q  112 tcattgtatttctctataaatagagctcatatgtaacctaattgtacataccaagagaataatataatc 180  Q
    |||||||| ||||||||||||||||  || ||||||| |||||| |||   ||||||||||||||||||    
T  22575932 tcattgtacttctctataaatagagaccacatgtaacataattgaacactacaagagaataatataatc 22575864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 112 - 196
Target Start/End: Original strand, 29644986 - 29645070
Alignment:
Q  112 tcattgtatttctctataaatagagctcatatgtaacctaattgtacataccaagagaataatataatcctctttcttctctctc 196  Q
    |||||||| ||||||||||||| |  ||| ||||||| ||||| |||||  ||| |  ||||||||||||| |||||||||||||    
T  29644986 tcattgtacttctctataaataaaaatcacatgtaacataattatacatcacaaaacgataatataatcctttttcttctctctc 29645070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 11660159 - 11660202
Alignment:
Q  1 tggacatccaagggggagtgttatgaatattataagtggatgtc 44  Q
    |||||||||||||||||||||||| |||||||  ||||||||||    
T  11660159 tggacatccaagggggagtgttataaatattaatagtggatgtc 11660202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 29547722 - 29547753
Alignment:
Q  1 tggacatccaagggggagtgttatgaatatta 32  Q
    ||||||||||||||||||||||||||||||||    
T  29547722 tggacatccaagggggagtgttatgaatatta 29547753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 28519257 - 28519331
Alignment:
Q  1 tggacatccaagggggagtgttatgaatattataagtggatgtctatatagcaattgggttattaggtcatacta 75  Q
    |||||||||||||||||||||||| |||||||  | |||||||| | ||||||| || |||| | || |||||||    
T  28519257 tggacatccaagggggagtgttataaatattaatattggatgtccaaatagcaaatgtgttagtgggccatacta 28519331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 38991081 - 38991155
Alignment:
Q  1 tggacatccaagggggagtgttatgaatattataagtggatgtctatatagcaattgggttattaggtcatacta 75  Q
    |||||||||||||||||||||||| |||||||  | |||||||| | ||||||| || |||| | || |||||||    
T  38991081 tggacatccaagggggagtgttataaatattaatattggatgtccaaatagcaaatgtgttagtgggccatacta 38991155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 145567 - 145538
Alignment:
Q  1 tggacatccaagggggagtgttatgaatat 30  Q
    ||||||||||||||||||||||||||||||    
T  145567 tggacatccaagggggagtgttatgaatat 145538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 21 - 62
Target Start/End: Complemental strand, 47364736 - 47364695
Alignment:
Q  21 ttatgaatattataagtggatgtctatatagcaattgggtta 62  Q
    |||||||||||||||||||||||||||| || || |||||||    
T  47364736 ttatgaatattataagtggatgtctatagagtaaatgggtta 47364695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 152; Significance: 1e-80; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 12756340 - 12756145
Alignment:
Q  1 tggacatccaagggggagtgttatgaatattataagtggatgtctatatagcaattgggttattaggtcatactattagcttattgggccatattgtgct 100  Q
    |||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||| | ||||| | |||||||||||||||||||||||||    
T  12756340 tggacatccaagggggagtgttatgaatattacaagtggatgtccatataacaattgggttattggatcatattgttagcttattgggccatattgtgct 12756241  T
Q  101 tgctccccaagtcattgtatttctctataaatagagctcatatgtaacctaattgtacataccaagagaataatataatcctctttcttctctctc 196  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||  |||||||||||||||||| |||||||||||||||    
T  12756240 tgctccccaagtcattgtatttctctataaatagagctcatatgtaacctaattatacatcacaagagaataatataatcatctttcttctctctc 12756145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 19 - 196
Target Start/End: Complemental strand, 24052194 - 24052017
Alignment:
Q  19 tgttatgaatattataagtggatgtctatatagcaattgggttattaggtcatactattagcttattgggccatattgtgcttgctccccaagtcattgt 118  Q
    |||||||||||||| || |||||||| ||||| |||||| |||||| | ||||| | |||| ||||||||||||||||||||||||||||||||||||||    
T  24052194 tgttatgaatattacaaatggatgtccatataacaattgagttattggatcatattgttagtttattgggccatattgtgcttgctccccaagtcattgt 24052095  T
Q  119 atttctctataaatagagctcatatgtaacctaattgtacataccaagagaataatataatcctctttcttctctctc 196  Q
    |||||||||||||||||||||||||||||||||||| |||||  |||||||||||||||||| |||||||||||||||    
T  24052094 atttctctataaatagagctcatatgtaacctaattatacatcacaagagaataatataatcttctttcttctctctc 24052017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 19 - 196
Target Start/End: Original strand, 41043478 - 41043655
Alignment:
Q  19 tgttatgaatattataagtggatgtctatatagcaattgggttattaggtcatactattagcttattgggccatattgtgcttgctccccaagtcattgt 118  Q
    |||||||||||||| ||||||||||||||||||||||||||||||| | ||||| | ||||||||||||||  |||||||||| ||||||||||||||||    
T  41043478 tgttatgaatattacaagtggatgtctatatagcaattgggttattggatcatattgttagcttattgggctttattgtgcttactccccaagtcattgt 41043577  T
Q  119 atttctctataaatagagctcatatgtaacctaattgtacataccaagagaataatataatcctctttcttctctctc 196  Q
    |||||||||||||||||||||||||||||||||||| |||||  ||||||||||  ||||||||||||||||| ||||    
T  41043578 atttctctataaatagagctcatatgtaacctaattatacatcacaagagaatagcataatcctctttcttctatctc 41043655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 5 - 196
Target Start/End: Original strand, 41048844 - 41049028
Alignment:
Q  5 catccaagggggagtgttatgaatattataagtggatgtctatatagcaattgggttattaggtcatactattagcttattgggccatattgtgcttgct 104  Q
    ||||||||||| |||||||||||||||| ||||||||||| |||||||||||| |||||| | |       ||||||||||||| | |||| || |||||    
T  41048844 catccaaggggaagtgttatgaatattacaagtggatgtccatatagcaattgagttatttgat-------ttagcttattgggtcttattatgtttgct 41048936  T
Q  105 ccccaagtcattgtatttctctataaatagagctcatatgtaacctaattgtacataccaagagaataatataatcctctttcttctctctc 196  Q
    |||||||||||||||||| | ||||||||||||||||||||||||||||| |||||  ||||| ||||| |||||| |||||||||| ||||    
T  41048937 ccccaagtcattgtatttatttataaatagagctcatatgtaacctaattatacatcacaagataataacataatcttctttcttctatctc 41049028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 30714392 - 30714304
Alignment:
Q  1 tggacatccaagggggagtgttatgaatattataagtggatgtctatatagcaattgggttattaggtcatactattagcttattgggc 89  Q
    |||||||||||||||||||||||| |||||||  |||||||||| | |||||||||| |||| | || ||||||| ||| |||||||||    
T  30714392 tggacatccaagggggagtgttataaatattaatagtggatgtccaaatagcaattgtgttagtgggccatactactaggttattgggc 30714304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 30722169 - 30722081
Alignment:
Q  1 tggacatccaagggggagtgttatgaatattataagtggatgtctatatagcaattgggttattaggtcatactattagcttattgggc 89  Q
    |||||||||||||||||||||||| |||||||  |||||||||| | |||||||||| |||| | || ||||||| ||| |||||||||    
T  30722169 tggacatccaagggggagtgttataaatattaatagtggatgtccaaatagcaattgtgttagtgggccatactactaggttattgggc 30722081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 112 - 196
Target Start/End: Original strand, 2232107 - 2232190
Alignment:
Q  112 tcattgtatttctctataaatagagctcatatgtaacctaattgtacataccaagagaataatataatcctctttcttctctctc 196  Q
    ||||| || ||||||||||||| || ||||||||||| || |||||||   ||||| ||||||||||||||||||||||||||||    
T  2232107 tcattatacttctctataaatatagatcatatgtaacata-ttgtacaccacaagataataatataatcctctttcttctctctc 2232190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 148
Target Start/End: Complemental strand, 24042924 - 24042894
Alignment:
Q  118 tatttctctataaatagagctcatatgtaac 148  Q
    |||||||||||||||||||||||||||||||    
T  24042924 tatttctctataaatagagctcatatgtaac 24042894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 27679801 - 27679727
Alignment:
Q  1 tggacatccaagggggagtgttatgaatattataagtggatgtctatatagcaattgggttattaggtcatacta 75  Q
    |||||||||||||||||||||||| |||||||  | |||||||| | ||||||| || |||| | || |||||||    
T  27679801 tggacatccaagggggagtgttataaatattaatattggatgtccaaatagcaaatgtgttagtgggccatacta 27679727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 37209694 - 37209768
Alignment:
Q  1 tggacatccaagggggagtgttatgaatattataagtggatgtctatatagcaattgggttattaggtcatacta 75  Q
    |||||||||||||||||||||||| |||||||  | |||||||| | ||||||| || |||| | || |||||||    
T  37209694 tggacatccaagggggagtgttataaatattaatattggatgtccaaatagcaaatgtgttagtgggccatacta 37209768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 21247658 - 21247711
Alignment:
Q  1 tggacatccaagggggagtgttatgaatattataagtggatgtctatatagcaa 54  Q
    |||||||||||||||||||||||| |||||||  | |||||||| | |||||||    
T  21247658 tggacatccaagggggagtgttataaatattaatattggatgtccaaatagcaa 21247711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 23429515 - 23429544
Alignment:
Q  1 tggacatccaagggggagtgttatgaatat 30  Q
    ||||||||||||||||||||||||||||||    
T  23429515 tggacatccaagggggagtgttatgaatat 23429544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 152; Significance: 1e-80; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 20192770 - 20192575
Alignment:
Q  1 tggacatccaagggggagtgttatgaatattataagtggatgtctatatagcaattgggttattaggtcatactattagcttattgggccatattgtgct 100  Q
    |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| | ||||| | |||||||||||||||||||||||||    
T  20192770 tggacatccaagggggagtgttatgaatattacaagtggatgtccatatagcaattgggttattggatcatattgttagcttattgggccatattgtgct 20192671  T
Q  101 tgctccccaagtcattgtatttctctataaatagagctcatatgtaacctaattgtacataccaagagaataatataatcctctttcttctctctc 196  Q
    ||||||| |||||||||||||||||||||||||||||| ||||||||||||||| |||||  ||||||||||||||||||||||||||||||||||    
T  20192670 tgctcccaaagtcattgtatttctctataaatagagcttatatgtaacctaattatacatcacaagagaataatataatcctctttcttctctctc 20192575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 6162229 - 6162424
Alignment:
Q  1 tggacatccaagggggagtgttatgaatattataagtggatgtctatatagcaattgggttattaggtcatactattagcttattgggccatattgtgct 100  Q
    |||||||||||||||||||||||||||||||| |||||||| || |||||| |||||||||||| | ||||| | |||| |||||||| |||||||||||    
T  6162229 tggacatccaagggggagtgttatgaatattacaagtggatatccatatagaaattgggttattggatcatattgttagtttattgggtcatattgtgct 6162328  T
Q  101 tgctccccaagtcattgtatttctctataaatagagctcatatgtaacctaattgtacataccaagagaataatataatcctctttcttctctctc 196  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||  |||||||||||||||||| |||||||||||||||    
T  6162329 tgctccccaagtcattgtatttctctataaatagagctcatatgtaacctaattatacatcacaagagaataatataatcatctttcttctctctc 6162424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 139; E-Value: 6e-73
Query Start/End: Original strand, 1 - 191
Target Start/End: Original strand, 53982076 - 53982265
Alignment:
Q  1 tggacatccaagggggagtgttatgaatattataagtggatgtctatatagcaattgggttattaggtcatactattagcttattgggccatattgtgct 100  Q
    |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| | ||||||| ||||||||||||||| |||||||||    
T  53982076 tggacatccaagggggagtgttatgaatattacaagtggatgtccatatagcaattgggttatttgatcatactgttagcttattgggccttattgtgct 53982175  T
Q  101 tgctccccaagtcattgtatttctctataaatagagctcatatgtaacctaattgtacataccaagagaataatataatcctctttcttct 191  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||  ||||||||||| |||||||||||| ||||    
T  53982176 tgct-cccaagtcattgtatttctctataaatagagctcatatgtaacctaattatacatcacaagagaataacataatcctcttttttct 53982265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 19 - 196
Target Start/End: Original strand, 6156550 - 6156727
Alignment:
Q  19 tgttatgaatattataagtggatgtctatatagcaattgggttattaggtcatactattagcttattgggccatattgtgcttgctccccaagtcattgt 118  Q
    |||||||||||||| ||||| ||||  |||||| |||||||||||| | ||||| | |||| ||||||||||||||||||||||||||||||||||||||    
T  6156550 tgttatgaatattacaagtgaatgttcatatagaaattgggttattggatcatattgttagtttattgggccatattgtgcttgctccccaagtcattgt 6156649  T
Q  119 atttctctataaatagagctcatatgtaacctaattgtacataccaagagaataatataatcctctttcttctctctc 196  Q
    |||||||||||||||||||||||||||||||||||| |||||  ||||||||||||||||||||||||||||||||||    
T  6156650 atttctctataaatagagctcatatgtaacctaattatacatcacaagagaataatataatcctctttcttctctctc 6156727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 19 - 196
Target Start/End: Complemental strand, 20198116 - 20197939
Alignment:
Q  19 tgttatgaatattataagtggatgtctatatagcaattgggttattaggtcatactattagcttattgggccatattgtgcttgctccccaagtcattgt 118  Q
    |||||||||||||| || |||||||| ||||||||||||||||||| | ||||| | |||| ||||||||||||||||||||||||||| ||||||||||    
T  20198116 tgttatgaatattacaaatggatgtccatatagcaattgggttattggatcatattgttagtttattgggccatattgtgcttgctcccaaagtcattgt 20198017  T
Q  119 atttctctataaatagagctcatatgtaacctaattgtacataccaagagaataatataatcctctttcttctctctc 196  Q
    |||||||||||||||||||| ||||||||||||||| |||||  ||||||||||||||||||||||||||||||||||    
T  20198016 atttctctataaatagagcttatatgtaacctaattatacatcacaagagaataatataatcctctttcttctctctc 20197939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 12659368 - 12659280
Alignment:
Q  1 tggacatccaagggggagtgttatgaatattataagtggatgtctatatagcaattgggttattaggtcatactattagcttattgggc 89  Q
    |||||||||||||||||||||||| |||||||  |||||||||| | ||||||| || |||||| || ||||||| ||| |||||||||    
T  12659368 tggacatccaagggggagtgttataaatattaatagtggatgtccaaatagcaaatgtgttattgggccatactactaggttattgggc 12659280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 16325895 - 16325807
Alignment:
Q  1 tggacatccaagggggagtgttatgaatattataagtggatgtctatatagcaattgggttattaggtcatactattagcttattgggc 89  Q
    |||||||||||||||||||||||| |||||||  |||||||||| | ||||||| || |||||| || ||||||| ||| |||||||||    
T  16325895 tggacatccaagggggagtgttataaatattaatagtggatgtccaaatagcaaatgtgttattgggccatactactaggttattgggc 16325807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 19582017 - 19582080
Alignment:
Q  1 tggacatccaagggggagtgttatgaatattataagtggatgtctatatagcaattgggttatt 64  Q
    |||||||| |||| |||||||||||||| ||||||||||||||| ||||| |||||||||||||    
T  19582017 tggacatctaaggaggagtgttatgaattttataagtggatgtccatatatcaattgggttatt 19582080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 1874169 - 1874081
Alignment:
Q  1 tggacatccaagggggagtgttatgaatattataagtggatgtctatatagcaattgggttattaggtcatactattagcttattgggc 89  Q
    |||||||||||||||||||||||| |||||||  |||||||||| | ||||||| || |||| | || ||||||||||  |||||||||    
T  1874169 tggacatccaagggggagtgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatactattatgttattgggc 1874081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 30673876 - 30673788
Alignment:
Q  1 tggacatccaagggggagtgttatgaatattataagtggatgtctatatagcaattgggttattaggtcatactattagcttattgggc 89  Q
    |||||||||||||||||||||||| |||||||  |||||||||| | ||||||| || |||| | || ||||||| ||| |||||||||    
T  30673876 tggacatccaagggggagtgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatactactaggttattgggc 30673788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 4 - 89
Target Start/End: Complemental strand, 25687732 - 25687647
Alignment:
Q  4 acatccaagggggagtgttatgaatattataagtggatgtctatatagcaattgggttattaggtcatactattagcttattgggc 89  Q
    ||||||||||||||||||||| |||||||  |||||||||| | ||||||| || |||| | || ||||||| ||| |||||||||    
T  25687732 acatccaagggggagtgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatactactagtttattgggc 25687647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 115 - 155
Target Start/End: Complemental strand, 12733982 - 12733942
Alignment:
Q  115 ttgtatttctctataaatagagctcatatgtaacctaattg 155  Q
    |||||||||||||||||||||||||| ||||||||||||||    
T  12733982 ttgtatttctctataaatagagctcacatgtaacctaattg 12733942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 23200508 - 23200596
Alignment:
Q  1 tggacatccaagggggagtgttatgaatattataagtggatgtctatatagcaattgggttattaggtcatactattagcttattgggc 89  Q
    |||||||| ||||||||||||||| |||||||  |||||||||| | ||||||| || |||| | || ||||||| ||| |||||||||    
T  23200508 tggacatctaagggggagtgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatactactagtttattgggc 23200596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 16 - 70
Target Start/End: Complemental strand, 7739919 - 7739865
Alignment:
Q  16 gagtgttatgaatattataagtggatgtctatatagcaattgggttattaggtca 70  Q
    ||||||||| ||||||||||||||||||  ||||| ||||||||||||| |||||    
T  7739919 gagtgttataaatattataagtggatgttcatatatcaattgggttattgggtca 7739865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 12435523 - 12435449
Alignment:
Q  1 tggacatccaagggggagtgttatgaatattataagtggatgtctatatagcaattgggttattaggtcatacta 75  Q
    |||||||||||||||||||||||| |||||||  | |||||||| | ||||||| || |||| | || |||||||    
T  12435523 tggacatccaagggggagtgttataaatattaatattggatgtccaaatagcaaatgtgttagtgggccatacta 12435449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 159
Target Start/End: Complemental strand, 28295303 - 28295253
Alignment:
Q  109 aagtcattgtatttctctataaatagagctcatatgtaacctaattgtaca 159  Q
    |||| ||||| ||||||||||||||||||||| ||||||| || |||||||    
T  28295303 aagttattgtctttctctataaatagagctcacatgtaacatacttgtaca 28295253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 29333619 - 29333693
Alignment:
Q  1 tggacatccaagggggagtgttatgaatattataagtggatgtctatatagcaattgggttattaggtcatacta 75  Q
    |||||||||||||||||||||||| |||||||  | |||||||| | ||||||| || |||| | || |||||||    
T  29333619 tggacatccaagggggagtgttataaatattaatattggatgtccaaatagcaaatgtgttagtgggccatacta 29333693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 42411089 - 42411163
Alignment:
Q  1 tggacatccaagggggagtgttatgaatattataagtggatgtctatatagcaattgggttattaggtcatacta 75  Q
    |||||||||||||||||||||||| |||||||  | |||||||| | ||||||| || |||| | || |||||||    
T  42411089 tggacatccaagggggagtgttataaatattaatattggatgtccaaatagcaaatgtgttagtgggccatacta 42411163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 4393930 - 4393869
Alignment:
Q  1 tggacatccaagggggagtgttatgaatattataagtggatgtctatatagcaattgggtta 62  Q
    ||||||||||| || ||||||||| |||||||  |||||||||||| ||| ||| |||||||    
T  4393930 tggacatccaatggagagtgttataaatattaatagtggatgtctaaataacaaatgggtta 4393869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 78
Target Start/End: Original strand, 7156032 - 7156092
Alignment:
Q  19 tgttatgaatattataagtggatgtctatatagc-aattgggttattaggtcatactatta 78  Q
    ||||||||||||||||||||||| || ||||| | ||||  |||||| |||||||||||||    
T  7156032 tgttatgaatattataagtggatctccatataacaaattaagttattgggtcatactatta 7156092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 12429060 - 12428972
Alignment:
Q  1 tggacatccaagggggagtgttatgaatattataagtggatgtctatatagcaattgggttattaggtcatactattagcttattgggc 89  Q
    ||||||||||||| |||||||||| |||||||  |||||||||| | | ||||| | ||||  | || ||||||| ||| |||||||||    
T  12429060 tggacatccaaggaggagtgttataaatattaatagtggatgtccaaagagcaaataggtttatgggccatactaataggttattgggc 12428972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 89
Target Start/End: Original strand, 18890000 - 18890072
Alignment:
Q  17 agtgttatgaatattataagtggatgtctatatagcaattgggttattaggtcatactattagcttattgggc 89  Q
    |||||||| |||||||  |||||||||| | ||||||| || |||| | || ||||||||||| |||||||||    
T  18890000 agtgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatactattaggttattgggc 18890072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 151; Significance: 4e-80; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 151; E-Value: 4e-80
Query Start/End: Original strand, 1 - 195
Target Start/End: Original strand, 14855918 - 14856112
Alignment:
Q  1 tggacatccaagggggagtgttatgaatattataagtggatgtctatatagcaattgggttattaggtcatactattagcttattgggccatattgtgct 100  Q
    |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| | ||||| | ||||| |||||||||||||||||||    
T  14855918 tggacatccaagggggagtgttatgaatattacaagtggatgtccatatagcaattgggttattggatcatattgttagcatattgggccatattgtgct 14856017  T
Q  101 tgctccccaagtcattgtatttctctataaatagagctcatatgtaacctaattgtacataccaagagaataatataatcctctttcttctctct 195  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||  |||||||||||||||||||||||||||||||||    
T  14856018 tgctccccacgtcattgtatttctctataaatagagctcatatgtaacctaattatacatcacaagagaataatataatcctctttcttctctct 14856112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 19 - 196
Target Start/End: Original strand, 14847078 - 14847255
Alignment:
Q  19 tgttatgaatattataagtggatgtctatatagcaattgggttattaggtcatactattagcttattgggccatattgtgcttgctccccaagtcattgt 118  Q
    |||||||||||||| |||||||| || ||||||||||||||||||| | ||||| | ||||||||||||||||||||||| |||||||||| ||||||||    
T  14847078 tgttatgaatattacaagtggatatccatatagcaattgggttatttgatcatattgttagcttattgggccatattgtgattgctccccacgtcattgt 14847177  T
Q  119 atttctctataaatagagctcatatgtaacctaattgtacataccaagagaataatataatcctctttcttctctctc 196  Q
    ||||||||||||||||| |||||||||||||||||| |||||  |||||||||||||||||| |||||||||||||||    
T  14847178 atttctctataaatagaactcatatgtaacctaattatacatcacaagagaataatataatcttctttcttctctctc 14847255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 18 - 196
Target Start/End: Original strand, 26680569 - 26680746
Alignment:
Q  18 gtgttatgaatattataagtggatgtctatatagcaattgggttattaggtcatactattagcttattgggccatattgtgcttgctccccaagtcattg 117  Q
    ||||||||||||||| ||||||||||| || ||||||||| ||| || | ||||||| |||| |||||||||| |||||||||||||||| |||||||||    
T  26680569 gtgttatgaatattacaagtggatgtccatgtagcaattgagttttttgatcatactgttagtttattgggccttattgtgcttgctccc-aagtcattg 26680667  T
Q  118 tatttctctataaatagagctcatatgtaacctaattgtacataccaagagaataatataatcctctttcttctctctc 196  Q
    ||||||||||||||||||||||||||||||||||||| |||||  ||||||||||| ||||||||||||||||| ||||    
T  26680668 tatttctctataaatagagctcatatgtaacctaattatacatcacaagagaataacataatcctctttcttctatctc 26680746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 2 - 106
Target Start/End: Original strand, 6933022 - 6933126
Alignment:
Q  2 ggacatccaagggggagtgttatgaatattataagtggatgtctatatagcaattgggttattaggtcatactattagcttattgggccatattgtgctt 101  Q
    |||||||||||| |  ||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| |||||||||||| | |||||||| ||    
T  6933022 ggacatccaaggagctgtgttatgaatattataagtggatgtccatatagcaattgggttattgggtcatactgttagcttattggactatattgtgttt 6933121  T
Q  102 gctcc 106  Q
    |||||    
T  6933122 gctcc 6933126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 19 - 73
Target Start/End: Original strand, 6924849 - 6924903
Alignment:
Q  19 tgttatgaatattataagtggatgtctatatagcaattgggttattaggtcatac 73  Q
    |||||||||||||||||||||||||| ||||||||||||||||||| | ||||||    
T  6924849 tgttatgaatattataagtggatgtcgatatagcaattgggttattggatcatac 6924903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 108 - 180
Target Start/End: Complemental strand, 10345793 - 10345722
Alignment:
Q  108 caagtcattgtatttctctataaatagagctcatatgtaacctaattgtacataccaagagaataatataatc 180  Q
    ||||||||| ||||||| ||||||||||| ||| ||||||| |||||| |||   ||||||||||||||||||    
T  10345793 caagtcattctatttctatataaatagagttcacatgtaacttaattg-acaacacaagagaataatataatc 10345722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 19441344 - 19441301
Alignment:
Q  1 tggacatccaagggggagtgttatgaatattataagtggatgtctat 47  Q
    |||||||||||||||||||||||||||||||   |||||||||||||    
T  19441344 tggacatccaagggggagtgttatgaatatt---agtggatgtctat 19441301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 112 - 196
Target Start/End: Original strand, 31023400 - 31023484
Alignment:
Q  112 tcattgtatttctctataaatagagctcatatgtaacctaattgtacataccaagagaataatataatcctctttcttctctctc 196  Q
    |||||||| |||| ||||||||||| ||| ||||||| |||||||| ||  || || |||||||||||| ||| |||||| ||||    
T  31023400 tcattgtagttctatataaatagagatcacatgtaacataattgtatatcacatgaaaataatataatcatctctcttctttctc 31023484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 92 - 157
Target Start/End: Original strand, 28956607 - 28956672
Alignment:
Q  92 tattgtgcttgctccccaagtcattgtatttctctataaatagagctcatatgtaacctaattgta 157  Q
    ||||||| ||| | || |||| |||||||||| ||| |||||||||||| |||||| |||||||||    
T  28956607 tattgtgtttgtttccaaagttattgtatttcactagaaatagagctcacatgtaatctaattgta 28956672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 17270366 - 17270338
Alignment:
Q  1 tggacatccaagggggagtgttatgaata 29  Q
    |||||||||||||||||||||||||||||    
T  17270366 tggacatccaagggggagtgttatgaata 17270338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 140; Significance: 2e-73; HSPs: 2)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 345849 - 345654
Alignment:
Q  1 tggacatccaagggggagtgttatgaatattataagtggatgtctatatagcaattgggttattaggtcatactattagcttattgggccatattgtgct 100  Q
    |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| | ||||| | |||||||||||||||||||||||||    
T  345849 tggacatccaagggggagtgttatgaatattacaagtggatgtccatatagcaattgggttattggatcatattgttagcttattgggccatattgtgct 345750  T
Q  101 tgctccccaagtcattgtatttctctataaatagagctcatatgtaacctaattgtacataccaagagaataatataatcctctttcttctctctc 196  Q
    | |||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||   |||| ||||||||||||||| ||||||||||||    
T  345749 tactccccaagtcattgtatttctctataaatagagctcacatgtaacctaattatacatcataagaaaataatataatcctcattcttctctctc 345654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #2
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 19 - 196
Target Start/End: Complemental strand, 351152 - 350975
Alignment:
Q  19 tgttatgaatattataagtggatgtctatatagcaattgggttattaggtcatactattagcttattgggccatattgtgcttgctccccaagtcattgt 118  Q
    |||||||||||||| ||||||||||| ||||||||||||||||||| | ||||| | |||||||||||| ||||||||||||||||||||||||||||||    
T  351152 tgttatgaatattacaagtggatgtccatatagcaattgggttattggatcatattgttagcttattggtccatattgtgcttgctccccaagtcattgt 351053  T
Q  119 atttctctataaatagagctcatatgtaacctaattgtacataccaagagaataatataatcctctttcttctctctc 196  Q
    |||||||||||||||||||||||||||||||||||| |||||   |||||||||||||||||||||||||||||||||    
T  351052 atttctctataaatagagctcatatgtaacctaattatacatcataagagaataatataatcctctttcttctctctc 350975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0169 (Bit Score: 131; Significance: 4e-68; HSPs: 2)
Name: scaffold0169
Description:

Target: scaffold0169; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 42 - 196
Target Start/End: Original strand, 10980 - 11134
Alignment:
Q  42 gtctatatagcaattgggttattaggtcatactattagcttattgggccatattgtgcttgctccccaagtcattgtatttctctataaatagagctcat 141  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10980 gtctatatagcaattgggttattgggtcatactattagcttattgggtcatattgtgcttgctccccaagtcattgtatttctctataaatagagctcat 11079  T
Q  142 atgtaacctaattgtacataccaagagaataatataatcctctttcttctctctc 196  Q
    || ||||||||||| | |||||||||||||||||||||| |||||||||||||||    
T  11080 atataacctaattggatataccaagagaataatataatcatctttcttctctctc 11134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0169; HSP #2
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 18 - 177
Target Start/End: Original strand, 8694 - 8853
Alignment:
Q  18 gtgttatgaatattataagtggatgtctatatagcaattgggttattaggtcatactattagcttattgggccatattgtgcttgctccccaagtcattg 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  8694 gtgttatgaatattataagtggatgtctatatagcaattgggttattgggtcatactattagcttattgggtcatattgtgcttgctccccaagtcattg 8793  T
Q  118 tatttctctataaatagagctcatatgtaacctaattgtacataccaagagaataatata 177  Q
    ||||||||||||||||||| | |||||||| ||||||| | | |||||||||||||||||    
T  8794 tatttctctataaatagagattatatgtaatctaattggatacaccaagagaataatata 8853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0211 (Bit Score: 125; Significance: 1e-64; HSPs: 1)
Name: scaffold0211
Description:

Target: scaffold0211; HSP #1
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 19 - 195
Target Start/End: Original strand, 26903 - 27079
Alignment:
Q  19 tgttatgaatattataagtggatgtctatatagcaattgggttattaggtcatactattagcttattgggccatattgtgcttgctccccaagtcattgt 118  Q
    |||||||||||||| ||||||||||| ||||||||||||||||||| | ||||| | ||||||||||||| |||||||||||||||||||||||||||||    
T  26903 tgttatgaatattacaagtggatgtccatatagcaattgggttattggatcatattgttagcttattgggtcatattgtgcttgctccccaagtcattgt 27002  T
Q  119 atttctctataaatagagctcatatgtaacctaattgtacataccaagagaataatataatcctctttcttctctct 195  Q
    |||||||||||||||||||||||||||||| ||||   |||||  ||||||||||||||||||||||||||||||||    
T  27003 atttctctataaatagagctcatatgtaacataataaaacataaaaagagaataatataatcctctttcttctctct 27079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0124 (Bit Score: 102; Significance: 7e-51; HSPs: 1)
Name: scaffold0124
Description:

Target: scaffold0124; HSP #1
Raw Score: 102; E-Value: 7e-51
Query Start/End: Original strand, 9 - 195
Target Start/End: Original strand, 39431 - 39639
Alignment:
Q  9 caagggggagtgttatgaatattataagtggatgtctatatagcaattgggttattaggtcatactattagcttattgggccatattgtg---------- 98  Q
    |||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||| |||| ||||||||||||||||| ||||||||||              
T  39431 caagggggagtgttatgaatattataagtggatgtccatataacaattaggttattgggtcgtactattagcttattggaccatattgtgcttgctccct 39530  T
Q  99 ------------cttgctccccaagtcattgtatttctctataaatagagctcatatgtaacctaattgtacataccaagagaataatataatcctcttt 186  Q
                |||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||    
T  39531 aagtcattggtgcttgctcctcaagtcattgtatttctctataaatagagctcatatgtaacctaatggtacatactaagagaataatataatcctcttt 39630  T
Q  187 cttctctct 195  Q
    |||||||||    
T  39631 cttctctct 39639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0121 (Bit Score: 101; Significance: 3e-50; HSPs: 1)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 19 - 196
Target Start/End: Complemental strand, 11608 - 11409
Alignment:
Q  19 tgttatgaatattataagtggatgtctatatagcaattgggttattaggtcatactattagcttattgggccatattgtg-------------------- 98  Q
    |||||||||||||||||||||||||| | ||||||||| ||||||| |||||||||||||||||||||| ||||||||||                        
T  11608 tgttatgaatattataagtggatgtccacatagcaattaggttattgggtcatactattagcttattggaccatattgtggttgctccctaagtcattgg 11509  T
Q  99 --cttgctccccaagtcattgtatttctctataaatagagctcatatgtaacctaattgtacataccaagagaataatataatcctctttcttctctctc 196  Q
      ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||    
T  11508 tgcttgctccccaagtcattgtatttctctataaatagagctcatatgtaacctaatggtacatactaagagaataatataatcctctttcttctctctc 11409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 111857 - 111945
Alignment:
Q  1 tggacatccaagggggagtgttatgaatattataagtggatgtctatatagcaattgggttattaggtcatactattagcttattgggc 89  Q
    |||||||||||||||||||||||| |||||||  |||||||||| | ||||||| || |||| | || ||||||||||| |||||||||    
T  111857 tggacatccaagggggagtgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatactattaggttattgggc 111945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0102 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0102
Description:

Target: scaffold0102; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 14007 - 14060
Alignment:
Q  1 tggacatccaagggggagtgttatgaatattataagtggatgtctatatagcaa 54  Q
    |||||||||||||||||||||||| |||||||  |||||||||| | |||||||    
T  14007 tggacatccaagggggagtgttataaatattaatagtggatgtccaaatagcaa 14060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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