View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6924_low_3 (Length: 437)
Name: NF6924_low_3
Description: NF6924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6924_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 401; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 21 - 421
Target Start/End: Complemental strand, 40929900 - 40929500
Alignment:
| Q |
21 |
cacctcttccttaaaaccttgtttgggaagatccaagtcattcaacagcagaagcccatatttaagctccaaagcaaaaattctttgctcctgttgtgat |
120 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40929900 |
cacctcttccttaaaaccttgtttgggaagatccaagtcattcaacagcagaagcccatatttaagctccaaagcaaaaattctttgctcctgttgtgat |
40929801 |
T |
|
| Q |
121 |
tgagagtacaacttctgcagagtctgtagagcactagagccgattcaatttgaataaagttggagtgttctccgcgcatcagagttttcagtctctatct |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40929800 |
tgagagtacaacttctgcagagtctgtagagcactagagccgattcaatttgaataaagttggagtgttctccgcgcatcagagttttcagtctctatct |
40929701 |
T |
|
| Q |
221 |
tagtatgcttctctagaagctcatgatctttcaatgctatcttttgcaccaagttttcagcctctaacttgagacttcggtttgatttctccaaaatatc |
320 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40929700 |
tagtatgcttctctagaagctcatgatctttcaatgctatcttttgcaccaagttttcagcctctaacttgagacttcggtttgatttctccaaaatatc |
40929601 |
T |
|
| Q |
321 |
acaatgttttttagaactctcaagtttttcagcctcttactcagctttgtttttcagtttattagcattttcttacgcactcttaaaagggaactgatgt |
420 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40929600 |
acaatgttttttagaactctcaagtttttcagcctcttactcagctttgtttttcagtttattagcattttcttacgcactcttaaaagggaactgatgt |
40929501 |
T |
|
| Q |
421 |
c |
421 |
Q |
| |
|
| |
|
|
| T |
40929500 |
c |
40929500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 170; Significance: 4e-91; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 24 - 379
Target Start/End: Original strand, 944512 - 944861
Alignment:
| Q |
24 |
ctcttccttaaaaccttgtttgggaagatccaagtcattcaacagcagaagcccatatttaagctccaaagcaaaaattctttgctcctgttgtgattga |
123 |
Q |
| |
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||||||||||||| ||||||||| ||| |||||||| |||||||| |||||||||||||||||||||||||||| | |||||||||||| |||||||||| |
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| T |
944512 |
ctcttccttaaaatcttgtttggaaagttccaagtccttcaacagaagaagcccatatttaagctccaaagcaagatttctttgctccttttgtgattga |
944611 |
T |
|
| Q |
124 |
gagtacaacttctgcagagtctgtagagcactagagccgattcaatttgaataaagttggagtgttctccgcgcatcagagttttcagtctct--atctt |
221 |
Q |
| |
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||||||||||| ||||||| ||||||||| |||||||||||||||||||| || || ||||| |||||||||||| |||||||| |||| |
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| T |
944612 |
gagtacaacttttgcagagcctgtagagct--------gattcaatttgaataaagttagaatgctctccatgcatcagagtttgcagtctctctatctc |
944703 |
T |
|
| Q |
222 |
agtatgcttctctagaagctcatgatctttcaatgctatcttttgcaccaagttttcagcctctaacttgagacttcggtttgatttctccaaaatatca |
321 |
Q |
| |
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||||||||||||||||||||||||||||||| |||||||| | ||||| || |||||||||||||||| ||| || |||||||||||||||| ||| || |
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| T |
944704 |
agtatgcttctctagaagctcatgatctttcgatgctatcctctgcactaaattttcagcctctaactgaagattttggtttgatttctccaacatacca |
944803 |
T |
|
| Q |
322 |
caatgttttttagaactctcaagtttttcagcctcttactcagctttgtttttcagtt |
379 |
Q |
| |
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| |||||||| |||| ||||||||||||||||||||| ||| ||||||||| |||| |
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|
| T |
944804 |
cgatgtttttcagaaatctcaagtttttcagcctctttttcaattttgttttttagtt |
944861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 25 - 151
Target Start/End: Original strand, 46661898 - 46662024
Alignment:
| Q |
25 |
tcttccttaaaaccttgtttgggaagatccaagtcattcaacagcagaagcccatatttaagctccaaagcaaaaattctttgctcctgttgtgattgag |
124 |
Q |
| |
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||||| || ||||| | ||||| ||| |||| ||| | ||||||| ||||||| | ||||||||||||||||| | |||||||||| |||||| |||| |
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| T |
46661898 |
tcttctttgaaaccctttttggaaagttccaggtcctccaacagctgaagcccgtgtttaagctccaaagcaagagacctttgctcctcttgtgactgag |
46661997 |
T |
|
| Q |
125 |
agtacaacttctgcagagtctgtagag |
151 |
Q |
| |
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||||| | || ||||||||||| |||| |
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|
| T |
46661998 |
agtacgagttttgcagagtctgcagag |
46662024 |
T |
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