View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6924_low_8 (Length: 251)
Name: NF6924_low_8
Description: NF6924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6924_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 168; Significance: 4e-90; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 30 - 247
Target Start/End: Complemental strand, 40780852 - 40780635
Alignment:
| Q |
30 |
aaacaaaaatagtagacaataccc-atttggattattttatgatttacactattttttgttaattatctagttgattgcccgattgagaaaaataatatg |
128 |
Q |
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| T |
40780852 |
aaacaaaaatagtagacaataccctatttggactattttatgatttacactattttttgttaattatctagttgattgcccgattgagaaaaataatatg |
40780753 |
T |
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| Q |
129 |
aattttgtatgttatgaatatatagaannnnnnnnnacctattattcatgaattttggtctggcttctgtatttgtcatctacattttgtggctgtagtg |
228 |
Q |
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| T |
40780752 |
aattttgtatgttatgaatatatagattttttttttacctattattcatgaattttggtctggcttctgta-ttgtcatctacattttgtggctgtagtg |
40780654 |
T |
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| Q |
229 |
aatctgctaattaagtagt |
247 |
Q |
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| T |
40780653 |
aatctgctaattaagtagt |
40780635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 205 - 239
Target Start/End: Complemental strand, 40773276 - 40773242
Alignment:
| Q |
205 |
catctacattttgtggctgtagtgaatctgctaat |
239 |
Q |
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| T |
40773276 |
catctacattttgtggctgtggtgaatctgctaat |
40773242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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