View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6925_low_1 (Length: 342)
Name: NF6925_low_1
Description: NF6925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6925_low_1 |
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| [»] chr2 (10 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 306; Significance: 1e-172; HSPs: 10)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 16 - 342
Target Start/End: Original strand, 38792106 - 38792433
Alignment:
| Q |
16 |
tgtgcggagatagatttggatagacgtttgttgttgaatattatgcttttgctgtggtcgatatggacacaagaaaggtaactgtgttgaaagagttagt |
115 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38792106 |
tgtgtggagatagatttggatagacgtttgttgttgaatattatgcttttgctgtggtcgatatggacacaagaaaggtaactgtgttgaaagagttagt |
38792205 |
T |
|
| Q |
116 |
gatgtttgagagaaaatgcaggggaagattgaagagattgtcgaggatttagtcgcgaaggaagtagagctatgtttgatggaggacttgattggagagc |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38792206 |
gatgtttgagagaaaatgcaggggaagattgaagagattgtcgaggatttagtcgcgaaggaagtagagctatgtttgatggaggacttgattggagagc |
38792305 |
T |
|
| Q |
216 |
gtaggcaagaacttgagaaaaaagagaaggagctttatcaagtcatggatgacatttcaaaacagaagcatttggaaagccaagtgaaggagctggtgaa |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
38792306 |
gtaggcaagaacttgagaaaaaagagaaggagctttatcaagtcatggatgacatttc-aaacagaagcatttggaaagccaagtgaaggagctggtgaa |
38792404 |
T |
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| Q |
316 |
tgatttg--gtgttgagacaaaagcagtt |
342 |
Q |
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||||||| |||||||||||||||||||| |
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| T |
38792405 |
tgatttggtgtgttgagacaaaagcagtt |
38792433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 126 - 324
Target Start/End: Original strand, 39152012 - 39152210
Alignment:
| Q |
126 |
agaaaatgcaggggaagattgaagagattgtcgaggatttagtcgcgaaggaagtagagctatgtttgatggaggacttgattggagagcgtaggcaaga |
225 |
Q |
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|||||||||||||||| ||||| || |||| ||||||| || || ||||||| |||| | ||||||||||||||||||||||||||| | |||||| |
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| T |
39152012 |
agaaaatgcaggggaaaattgatgaatgtgtcaaggattttgtagcaaaggaagggcagctctatttgatggaggacttgattggagagcgcaagcaaga |
39152111 |
T |
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| Q |
226 |
acttgagaaaaaagagaaggagctttatcaagtcatggatgacatttcaaaacagaagcatttggaaagccaagtgaaggagctggtgaatgatttggt |
324 |
Q |
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||| ||| ||||||| ||| ||| | ||||||||||| ||||||||||||||||| | || ||||||||||| ||||||||||||||||||||||| |
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| T |
39152112 |
actcaagacaaaagagttggaacttcgtgaagtcatggataacatttcaaaacagaaggaatttgaaagccaagtaaaggagctggtgaatgatttggt |
39152210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 126 - 324
Target Start/End: Original strand, 39136395 - 39136593
Alignment:
| Q |
126 |
agaaaatgcaggggaagattgaagagattgtcgaggatttagtcgcgaaggaagtagagctatgtttgatggaggacttgattggagagcgtaggcaaga |
225 |
Q |
| |
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||||||||||||| || ||||| || |||| ||||||| || || ||||||| |||| ||||||||||||||||||||||||||| | | |||| |
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| T |
39136395 |
agaaaatgcagggaaaaattgacgaatgtgtcaaggattttgtagcaaaggaagggcagctcggtttgatggaggacttgattggagagcacaagaaaga |
39136494 |
T |
|
| Q |
226 |
acttgagaaaaaagagaaggagctttatcaagtcatggatgacatttcaaaacagaagcatttggaaagccaagtgaaggagctggtgaatgatttggt |
324 |
Q |
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||| ||| ||||||| ||| ||| ||||||||||||| ||||||||||||| ||| | |||||||||||||||||||||||||||||||||||||| |
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| T |
39136495 |
actaaagacaaaagagttggaacttcgtcaagtcatggataacatttcaaaacaaaaggaattggaaagccaagtgaaggagctggtgaatgatttggt |
39136593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 126 - 322
Target Start/End: Complemental strand, 39488148 - 39487953
Alignment:
| Q |
126 |
agaaaatgcaggggaagattgaagagattgtcgaggatttagtcgcgaaggaagtagagctatgtttgatggaggacttgattggagagcgtaggcaaga |
225 |
Q |
| |
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|||||||||||||||| |||||||| |||| | ||||| || || ||||||| | |||||| ||||||||||||||||||||||| || | |||||| |
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| T |
39488148 |
agaaaatgcaggggaaaattgaagaatgtgtcaaagattttgtagcaaaggaaggacagctatatttgatggaggacttgattggag-gcacaagcaaga |
39488050 |
T |
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| Q |
226 |
acttgagaaaaaagagaaggagctttatcaagtcatggatgacatttcaaaacagaagcatttggaaagccaagtgaaggagctggtgaatgatttg |
322 |
Q |
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||| || | |||||||| ||| ||| | ||||||||||| ||||||||||||||||| | || |||||||| ||||||||||||||||||||||| |
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| T |
39488049 |
actcgatacaaaagagacggaacttcgtgaagtcatggataacatttcaaaacagaagaaatttgaaagccagatgaaggagctggtgaatgatttg |
39487953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 126 - 324
Target Start/End: Complemental strand, 39474235 - 39474037
Alignment:
| Q |
126 |
agaaaatgcaggggaagattgaagagattgtcgaggatttagtcgcgaaggaagtagagctatgtttgatggaggacttgattggagagcgtaggcaaga |
225 |
Q |
| |
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||||||||||||| || |||||||| |||| ||||||| || || ||||| | | |||| | |||| ||||||| |||||| |||||| | |||||| |
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| T |
39474235 |
agaaaatgcagggaaaaattgaagaatgtgtcaaggattttgtagcaaaggatggacagctctatttggtggaggaattgattcaagagcgcaagcaaga |
39474136 |
T |
|
| Q |
226 |
acttgagaaaaaagagaaggagctttatcaagtcatggatgacatttcaaaacagaagcatttggaaagccaagtgaaggagctggtgaatgatttggt |
324 |
Q |
| |
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||| | | |||||| | ||| |||| ||||||||||||| ||||||||||||||||| | || |||||||||||||||||||| |||||||||||||| |
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| T |
39474135 |
actcaacacaaaagatatggaactttgtcaagtcatggataacatttcaaaacagaaggaatttgaaagccaagtgaaggagctagtgaatgatttggt |
39474037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 190 - 306
Target Start/End: Original strand, 39458387 - 39458503
Alignment:
| Q |
190 |
tttgatggaggacttgattggagagcgtaggcaagaacttgagaaaaaagagaaggagctttatcaagtcatggatgacatttcaaaacagaagcatttg |
289 |
Q |
| |
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||||||||| ||||||||||||||||| | ||||||||| ||| |||||||| || ||| ||||||||| |||| |||||||||||||||||||||| |
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| T |
39458387 |
tttgatggaagacttgattggagagcgcaagcaagaactcaagacaaaagagatagaacttcatcaagtcaaggataacatttcaaaacagaagcatttt |
39458486 |
T |
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| Q |
290 |
gaaagccaagtgaagga |
306 |
Q |
| |
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||||| ||||||||||| |
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| T |
39458487 |
gaaagacaagtgaagga |
39458503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 126 - 324
Target Start/End: Complemental strand, 39422447 - 39422249
Alignment:
| Q |
126 |
agaaaatgcaggggaagattgaagagattgtcgaggatttagtcgcgaaggaagtagagctatgtttgatggaggacttgattggagagcgtaggcaaga |
225 |
Q |
| |
|
|||||||||||||||| |||||||| ||||||||| || || || |||||| | |||| | ||||||||| |||||||||||||||| | |||||| |
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| T |
39422447 |
agaaaatgcaggggaaaattgaagaatgtgtcgaggaattcgtagcaaaggaatcacagctctctttgatggaaaacttgattggagagcgcaagcaaga |
39422348 |
T |
|
| Q |
226 |
acttgagaaaaaagagaaggagctttatcaagtcatggatgacatttcaaaacagaagcatttggaaagccaagtgaaggagctggtgaatgatttggt |
324 |
Q |
| |
|
||| | | |||| || ||| ||| | ||||||||||||||||||||||||||||| | |||||| ||||| || ||||||| |||||||||||| |
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| T |
39422347 |
actcaacacaaaaaagctggaacttcgtaaagtcatggatgacatttcaaaacagaaggaattggaaggccaattggccgagctggagaatgatttggt |
39422249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 154 - 324
Target Start/End: Complemental strand, 39416299 - 39416129
Alignment:
| Q |
154 |
tgtcgaggatttagtcgcgaaggaagtagagctatgtttgatggaggacttgattggagagcgtaggcaagaacttgagaaaaaagagaaggagctttat |
253 |
Q |
| |
|
|||| ||||||| || || ||||||| | |||| | |||| ||||||| |||||| | ||||| | ||||||||| ||| ||||||| ||| ||| | |
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| T |
39416299 |
tgtcaaggattttgtagcaaaggaaggacagctctatttggtggaggaattgattcgggagcgcaagcaagaactcaagacaaaagagttggaacttcgt |
39416200 |
T |
|
| Q |
254 |
caagtcatggatgacatttcaaaacagaagcatttggaaagccaagtgaaggagctggtgaatgatttggt |
324 |
Q |
| |
|
||| ||| ||| ||||||||||||||||| | || |||||||||||||||||||| | |||||||||||| |
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| T |
39416199 |
caaatcaccgataacatttcaaaacagaaggaatttgaaagccaagtgaaggagctagggaatgatttggt |
39416129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 125 - 285
Target Start/End: Original strand, 39215038 - 39215198
Alignment:
| Q |
125 |
gagaaaatgcaggggaagattgaagagattgtcgaggatttagtcgcgaaggaagtagagctatgtttgatggaggacttgattggagagcgtaggcaag |
224 |
Q |
| |
|
|||||||||||||| || |||||||| | | ||||||| || | |||||||| |||| | ||||||||| ||||||||||||||||| | ||||| |
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| T |
39215038 |
gagaaaatgcagggaaaaattgaagaatgtattaaggattttgtagtgaaggaagggaagctctatttgatggacgacttgattggagagcgcaagcaag |
39215137 |
T |
|
| Q |
225 |
aacttgagaaaaaagagaaggagctttatcaagtcatggatgacatttcaaaacagaagca |
285 |
Q |
| |
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| || ||| |||||||| || ||| ||||||||| | | ||||||||||| ||||||| |
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| T |
39215138 |
agctcaagacaaaagagatagaacttaatcaagtcaatggtaacatttcaaaagagaagca |
39215198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 228
Target Start/End: Complemental strand, 39495444 - 39495399
Alignment:
| Q |
183 |
agctatgtttgatggaggacttgattggagagcgtaggcaagaact |
228 |
Q |
| |
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|||| ||||||||||| ||||||||||||||||| | ||||||||| |
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| T |
39495444 |
agctctgtttgatggatgacttgattggagagcgcaagcaagaact |
39495399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 189 - 324
Target Start/End: Original strand, 19806819 - 19806954
Alignment:
| Q |
189 |
gtttgatggaggacttgattggagagcgtaggcaagaacttgagaaaaaagagaaggagctttatcaagtcatggatgacatttcaaaacagaagcattt |
288 |
Q |
| |
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|||||||||||||||||||||||||||| | | ||||||| ||| ||||||| ||| ||| |||||||||||||| ||||||||||||| ||| | || |
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| T |
19806819 |
gtttgatggaggacttgattggagagcgcaagaaagaactaaagacaaaagagttggaacttcatcaagtcatggataacatttcaaaacaaaaggaatt |
19806918 |
T |
|
| Q |
289 |
ggaaagccaagtgaaggagctggtgaatgatttggt |
324 |
Q |
| |
|
||||||||| |||||||||||| ||||||||||||| |
|
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| T |
19806919 |
ggaaagccacgtgaaggagctgatgaatgatttggt |
19806954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 194 - 304
Target Start/End: Original strand, 17059023 - 17059133
Alignment:
| Q |
194 |
atggaggacttgattggagagcgtaggcaagaacttgagaaaaaagagaaggagctttatcaagtcatggatgacatttcaaaacagaagcatttggaaa |
293 |
Q |
| |
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||||||||||||||||||||||| | ||||||||| | || |||||||| || ||| ||||||||||||| |||||||||||||||||||||| |||| |
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| T |
17059023 |
atggaggacttgattggagagcgcaagcaagaactcgtgacaaaagagagagaacttcgtcaagtcatggataacatttcaaaacagaagcattttgaaa |
17059122 |
T |
|
| Q |
294 |
gccaagtgaag |
304 |
Q |
| |
|
|| || ||||| |
|
|
| T |
17059123 |
gcaaattgaag |
17059133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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