View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6925_low_2 (Length: 216)
Name: NF6925_low_2
Description: NF6925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6925_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 74; Significance: 4e-34; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 136 - 209
Target Start/End: Complemental strand, 3894986 - 3894913
Alignment:
| Q |
136 |
tggctttctcccacattgaacctgcagcatcttttgtcttctcatttgtatcacgtgcaaattgtttgatgtcc |
209 |
Q |
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| T |
3894986 |
tggctttctcccacattgaacctgcagcatcttttgtcttctcatttgtatcacgtgcaaattgtttgatgtcc |
3894913 |
T |
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Target: chr2; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 3895112 - 3895045
Alignment:
| Q |
1 |
cttctctggctttatcccacacagaacctgctgcttcattggttctgtcttttacctcataagcatag |
68 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3895112 |
cttctctggctttatcccacacagaacctgctgcttcattggttctgtcttttacctcataagcatag |
3895045 |
T |
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