View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6925_low_5 (Length: 203)
Name: NF6925_low_5
Description: NF6925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6925_low_5 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 189; Significance: 1e-103; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 189; E-Value: 1e-103
Query Start/End: Original strand, 1 - 189
Target Start/End: Original strand, 52926241 - 52926429
Alignment:
| Q |
1 |
aacataaatgaaagaggaagaatcgaagtcttgttgagagcgatagcaaacaaagagaccgcaaccgatgcaattcatgcggaattgtttctcgagtttg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52926241 |
aacataaatgaaagaggaagaatcgaagtcttgttgagagcgatagcaaacaaagagaccgcaaccgatgcaattcatgcggaattgtttctcgagtttg |
52926340 |
T |
|
| Q |
101 |
ccttggccacgctttaagagaacgttgccagcttcgtgaatattgaatcttgcaagatgtttggtcttatccaaaacgtaagctctgtc |
189 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52926341 |
ccttggccacgctttaagagaacgttgccagcttcgtgaatattgaatcttgcaagatgtttggtcttatccaaaacgtaagctctgtc |
52926429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University