View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6926_high_5 (Length: 412)
Name: NF6926_high_5
Description: NF6926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6926_high_5 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 158 - 412
Target Start/End: Complemental strand, 42592133 - 42591879
Alignment:
| Q |
158 |
tggatcctcatcacaatttcattgaaataaccatcaaattttagttcctaaagtaccatcaatgtctttctaattcatcaatttaacgttaatataatat |
257 |
Q |
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| T |
42592133 |
tggatcctcatcacaatttcattgaaataaccatcaaattttagttcctaaagtaccatcaatgtctttctaattcatcaatttaacgttaatataatat |
42592034 |
T |
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| Q |
258 |
acactagagactaacttcattgatttcatatactttaaggatgttcaannnnnnnatatatattttagaaagtaaattgaaaagagagtgatattttaaa |
357 |
Q |
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| T |
42592033 |
acactagagactaacttcattgatttcatatactttaaggatgttcaattttttaatatatattttagaaagtaaattgaaaagagagtgatattttaaa |
42591934 |
T |
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| Q |
358 |
actaaactgataggttattccaatttaaattactcatacctcgtggcatcagagc |
412 |
Q |
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| T |
42591933 |
acaaaactgataggttattctaatttaaattactcatacctcgtggcatcagagc |
42591879 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 42592287 - 42592194
Alignment:
| Q |
1 |
aactcctaagagaaagttttttagtagctaaatccacatctacaaatccagcaaatgatggcttgtacaagttactcgtcaaagaagaactgtc |
94 |
Q |
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| T |
42592287 |
aactcctaagagaaagttttttagtagcaaaatccacatctacaaatccagcaaatgatggcttgtacaagttactcgtcaaagaagaactgtc |
42592194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 25951077 - 25951146
Alignment:
| Q |
1 |
aactcctaagagaaagttttttagta---gctaaatccacatctacaaatccagcaaatgatggcttgta |
67 |
Q |
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| T |
25951077 |
aactcctaagagaaagtttcttattatttgccaaatccacatctacaaagcctccaaatgatggcttgta |
25951146 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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