View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6926_low_1 (Length: 804)

Name: NF6926_low_1
Description: NF6926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6926_low_1
NF6926_low_1
[»] chr1 (23 HSPs)
chr1 (16-538)||(8116997-8117519)
chr1 (604-785)||(8117585-8117765)
chr1 (615-681)||(8108627-8108693)
chr1 (78-115)||(6332695-6332732)
chr1 (643-719)||(8106591-8106667)
chr1 (78-121)||(113324-113367)
chr1 (78-117)||(47989522-47989561)
chr1 (79-117)||(6612166-6612204)
chr1 (78-116)||(24577182-24577220)
chr1 (16-117)||(5944248-5944347)
chr1 (744-780)||(8106668-8106704)
chr1 (78-117)||(1486704-1486743)
chr1 (78-117)||(31694705-31694744)
chr1 (78-117)||(48547980-48548019)
chr1 (78-116)||(1704988-1705026)
chr1 (78-116)||(2218264-2218302)
chr1 (79-117)||(5376495-5376533)
chr1 (78-112)||(18337354-18337388)
chr1 (78-112)||(51410050-51410084)
chr1 (78-111)||(1815282-1815315)
chr1 (79-112)||(19058856-19058889)
chr1 (79-116)||(30173758-30173795)
chr1 (78-111)||(40258934-40258967)
[»] chr7 (14 HSPs)
chr7 (36-117)||(24339629-24339706)
chr7 (78-122)||(2334275-2334319)
chr7 (78-117)||(18039024-18039063)
chr7 (79-116)||(27945067-27945104)
chr7 (81-117)||(11272581-11272617)
chr7 (78-117)||(5409831-5409870)
chr7 (78-117)||(9778525-9778564)
chr7 (78-113)||(21560528-21560563)
chr7 (78-117)||(26033456-26033495)
chr7 (78-117)||(32094015-32094054)
chr7 (79-117)||(13770717-13770755)
chr7 (78-116)||(27229307-27229345)
chr7 (78-111)||(1401050-1401083)
chr7 (79-112)||(21880178-21880211)
[»] chr6 (14 HSPs)
chr6 (78-166)||(16766722-16766805)
chr6 (78-116)||(9911524-9911562)
chr6 (78-116)||(10770670-10770708)
chr6 (78-117)||(8365514-8365553)
chr6 (78-117)||(9107365-9107404)
chr6 (78-117)||(9522916-9522955)
chr6 (81-115)||(3398646-3398680)
chr6 (79-117)||(12696350-12696388)
chr6 (78-112)||(28152123-28152157)
chr6 (78-120)||(31384945-31384987)
chr6 (78-112)||(34595159-34595193)
chr6 (79-112)||(7977830-7977863)
chr6 (79-116)||(21395304-21395341)
chr6 (79-112)||(28715321-28715354)
[»] chr5 (9 HSPs)
chr5 (79-117)||(21542056-21542094)
chr5 (78-122)||(13287389-13287433)
chr5 (78-117)||(21351900-21351939)
chr5 (78-117)||(39698566-39698605)
chr5 (78-112)||(6247647-6247681)
chr5 (78-112)||(15884013-15884047)
chr5 (78-112)||(21191056-21191090)
chr5 (79-117)||(21522776-21522814)
chr5 (79-117)||(21533342-21533380)
[»] chr4 (8 HSPs)
chr4 (44-118)||(19312326-19312400)
chr4 (79-114)||(30298973-30299008)
chr4 (79-114)||(30327841-30327876)
chr4 (78-116)||(11596348-11596386)
chr4 (78-112)||(12797338-12797372)
chr4 (78-112)||(42640554-42640588)
chr4 (80-117)||(3947761-3947798)
chr4 (79-112)||(21945529-21945562)
[»] scaffold0025 (1 HSPs)
scaffold0025 (78-115)||(23795-23832)
[»] chr8 (6 HSPs)
chr8 (78-115)||(25566866-25566903)
chr8 (78-133)||(17468487-17468542)
chr8 (78-116)||(2572052-2572090)
chr8 (78-112)||(4948677-4948711)
chr8 (79-112)||(24669459-24669492)
chr8 (78-111)||(31557021-31557054)
[»] chr3 (9 HSPs)
chr3 (78-114)||(28918026-28918062)
chr3 (78-117)||(14209138-14209177)
chr3 (78-117)||(49651781-49651820)
chr3 (78-112)||(25775534-25775568)
chr3 (78-116)||(27505271-27505309)
chr3 (78-116)||(34185119-34185157)
chr3 (88-117)||(11155064-11155093)
chr3 (83-112)||(26492205-26492234)
chr3 (78-115)||(28812540-28812577)
[»] chr2 (9 HSPs)
chr2 (78-118)||(30717524-30717564)
chr2 (78-118)||(33153449-33153489)
chr2 (78-117)||(23058437-23058476)
chr2 (78-112)||(2438719-2438753)
chr2 (79-117)||(12668418-12668456)
chr2 (78-112)||(18421988-18422022)
chr2 (78-112)||(19536397-19536431)
chr2 (78-115)||(974772-974809)
chr2 (78-115)||(15657889-15657926)
[»] scaffold0223 (1 HSPs)
scaffold0223 (78-117)||(20197-20236)
[»] scaffold0171 (1 HSPs)
scaffold0171 (78-117)||(23445-23484)
[»] scaffold0086 (1 HSPs)
scaffold0086 (78-117)||(2953-2992)
[»] scaffold0136 (1 HSPs)
scaffold0136 (78-115)||(3846-3883)
[»] scaffold0083 (1 HSPs)
scaffold0083 (79-112)||(45530-45563)
[»] scaffold0004 (1 HSPs)
scaffold0004 (78-111)||(123653-123686)


Alignment Details
Target: chr1 (Bit Score: 443; Significance: 0; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 16 - 538
Target Start/End: Original strand, 8116997 - 8117519
Alignment:
Q  16 ggacatcagacactacacaaacattggcacaccgacacagctaataatttgaagnnnnnnnncacataattcagtgtaattacaagtatcggtgtcgtgt 115  Q
    ||||||||||||||||||||||| ||||||||| ||||||||||||||||||||        ||||||||||||||||||||||||||| |||||| |||    
T  8116997 ggacatcagacactacacaaacactggcacacctacacagctaataatttgaagaaaaaaaacacataattcagtgtaattacaagtattggtgtcatgt 8117096  T
Q  116 cgtgtcgttgttggacacatgtcgtgtccgacatcgggacatgcctaatccaagaaatgtctgcgattcatagactactaactacatgttcgctaccgag 215  Q
    |||||||||||||||||  |||||||||||||||||||||| ||||||||| || ||||||||||||||||||||||||||||||||||||| |||||||    
T  8117097 cgtgtcgttgttggacatgtgtcgtgtccgacatcgggacacgcctaatccgaggaatgtctgcgattcatagactactaactacatgttcgttaccgag 8117196  T
Q  216 acatgtctaatctaagaagtgtccgtgattcataaactatcatagttagtagataattataattcaaatgacacactattgttttcttgtgtgactaata 315  Q
    ||||||||||||| ||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  8117197 acatgtctaatctgagaagtgtctgtgattcataaactatcatagtttgtagataattataattcaaatgccacactattgttttcttgtgtgactaata 8117296  T
Q  316 tttagagaaactacctaattcctttgacaatttcaactgcagcaagaactcaagcagtgcaagaatagtatgaatttttccaaccagaaagtgggaagtt 415  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8117297 tttagagaaactacctaattcctttgacaatttcaactgcagcaagaactcaagcagtgcaagaatagtatgaatttttccaaccagaaagtgggaagtt 8117396  T
Q  416 gaagctaatttgaccaatacatgaatacattatacaattgtgaaaaatgtcaaaagtagcgtttacaagtctaacacaaaaatacataaattaagtttgt 515  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8117397 gaagctaatttgaccaatacatgaatacattatacaattgtgaaaaatgtcaaaagtagcgtttacaagtctaacacaaaaatacataaattaagtttgt 8117496  T
Q  516 gtttactaatactatggtctaac 538  Q
    |||||||||||||||||||||||    
T  8117497 gtttactaatactatggtctaac 8117519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 170; E-Value: 8e-91
Query Start/End: Original strand, 604 - 785
Target Start/End: Original strand, 8117585 - 8117765
Alignment:
Q  604 gtccaaatcgtgtcaaaattgcaaacgttgccaaataagactctctttttcttatccatttggtatatgtctccccagaaaaggttatagttgctggcaa 703  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8117585 gtccaaatcgtgtcaaaattgcaaacgttgccaaataagactctctttttcttatccatttggtatatgtctccccagaaaaggttatagttgctggcaa 8117684  T
Q  704 ctaagcagcaatagtagtaaacaaagttgccagcatacataacaaaattcaattgaaattcaagcacacttttgttctttac 785  Q
    |||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  8117685 ctaagcagcaatagtagtaaac-aagttgccagcagacataacaaaattcaattgaaattcaagcacacttttgttctttac 8117765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 615 - 681
Target Start/End: Original strand, 8108627 - 8108693
Alignment:
Q  615 gtcaaaattgcaaacgttgccaaataagactctctttttcttatccatttggtatatgtctccccag 681  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||  |||||||||    
T  8108627 gtcaaaattgcaaaagttgccaaataagactctctttttcttatccatttggtatacatctccccag 8108693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 78 - 115
Target Start/End: Original strand, 6332695 - 6332732
Alignment:
Q  78 cacataattcagtgtaattacaagtatcggtgtcgtgt 115  Q
    ||||||||||||||||||||||||||||||||||||||    
T  6332695 cacataattcagtgtaattacaagtatcggtgtcgtgt 6332732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 643 - 719
Target Start/End: Original strand, 8106591 - 8106667
Alignment:
Q  643 actctctttttcttatccatttggtatatgtctccccagaaaaggttatagttgctggcaactaagcagcaatagta 719  Q
    |||||||||||| |||| ||||||||| | ||||||||| || ||||| | ||||||||||||||||| ||| ||||    
T  8106591 actctctttttcatatcaatttggtatctatctccccaggaatggttacacttgctggcaactaagcaacaacagta 8106667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 78 - 121
Target Start/End: Original strand, 113324 - 113367
Alignment:
Q  78 cacataattcagtgtaattacaagtatcggtgtcgtgtcgtgtc 121  Q
    ||||||||||||||||||||||||| | ||||||||||||||||    
T  113324 cacataattcagtgtaattacaagtgtaggtgtcgtgtcgtgtc 113367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 78 - 117
Target Start/End: Original strand, 47989522 - 47989561
Alignment:
Q  78 cacataattcagtgtaattacaagtatcggtgtcgtgtcg 117  Q
    ||||||||||||||||||||||||| ||||||||||||||    
T  47989522 cacataattcagtgtaattacaagtgtcggtgtcgtgtcg 47989561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 79 - 117
Target Start/End: Complemental strand, 6612204 - 6612166
Alignment:
Q  79 acataattcagtgtaattacaagtatcggtgtcgtgtcg 117  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  6612204 acataattcagtgtaattacaagtgtcggtgtcgtgtcg 6612166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 78 - 116
Target Start/End: Complemental strand, 24577220 - 24577182
Alignment:
Q  78 cacataattcagtgtaattacaagtatcggtgtcgtgtc 116  Q
    ||||||||||||||||||||||||| |||||||||||||    
T  24577220 cacataattcagtgtaattacaagtgtcggtgtcgtgtc 24577182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 117
Target Start/End: Original strand, 5944248 - 5944347
Alignment:
Q  16 ggacatcagacactacacaaacattggcacaccgacacagctaataatttgaagnnnnnnnncacataattcagtgtaattacaagtatcggtgtcgtgt 115  Q
    ||||||| ||||| ||||| ||| || ||| ||| ||||||||||||||||||         |||||||||||||||||||| |||| ||||||||||||    
T  5944248 ggacatcggacacgacacagacactgacacgccgccacagctaataatttgaa--aaaaaatcacataattcagtgtaattataagtgtcggtgtcgtgt 5944345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 744 - 780
Target Start/End: Original strand, 8106668 - 8106704
Alignment:
Q  744 aacaaaattcaattgaaattcaagcacacttttgttc 780  Q
    |||||||| ||||||||||||||||||||||||||||    
T  8106668 aacaaaatccaattgaaattcaagcacacttttgttc 8106704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 117
Target Start/End: Complemental strand, 1486743 - 1486704
Alignment:
Q  78 cacataattcagtgtaattacaagtatcggtgtcgtgtcg 117  Q
    |||||||||||||||||||| |||| ||||||||||||||    
T  1486743 cacataattcagtgtaattataagtgtcggtgtcgtgtcg 1486704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 117
Target Start/End: Complemental strand, 31694744 - 31694705
Alignment:
Q  78 cacataattcagtgtaattacaagtatcggtgtcgtgtcg 117  Q
    ||||||||||||| ||||||||||| ||||||||||||||    
T  31694744 cacataattcagtataattacaagtgtcggtgtcgtgtcg 31694705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 117
Target Start/End: Complemental strand, 48548019 - 48547980
Alignment:
Q  78 cacataattcagtgtaattacaagtatcggtgtcgtgtcg 117  Q
    ||||||||||| ||||||||||||||| ||||||||||||    
T  48548019 cacataattcaatgtaattacaagtattggtgtcgtgtcg 48547980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 78 - 116
Target Start/End: Complemental strand, 1705026 - 1704988
Alignment:
Q  78 cacataattcagtgtaattacaagtatcggtgtcgtgtc 116  Q
    |||||||||||| |||||||||||| |||||||||||||    
T  1705026 cacataattcagggtaattacaagtgtcggtgtcgtgtc 1704988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 78 - 116
Target Start/End: Original strand, 2218264 - 2218302
Alignment:
Q  78 cacataattcagtgtaattacaagtatcggtgtcgtgtc 116  Q
    ||||||||| ||||||||||||||| |||||||||||||    
T  2218264 cacataatttagtgtaattacaagtgtcggtgtcgtgtc 2218302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 79 - 117
Target Start/End: Complemental strand, 5376533 - 5376495
Alignment:
Q  79 acataattcagtgtaattacaagtatcggtgtcgtgtcg 117  Q
    ||||||||||||||||||| |||| ||||||||||||||    
T  5376533 acataattcagtgtaattaaaagtgtcggtgtcgtgtcg 5376495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 78 - 112
Target Start/End: Original strand, 18337354 - 18337388
Alignment:
Q  78 cacataattcagtgtaattacaagtatcggtgtcg 112  Q
    ||||||||||||||||||||||||| |||||||||    
T  18337354 cacataattcagtgtaattacaagtgtcggtgtcg 18337388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 78 - 112
Target Start/End: Original strand, 51410050 - 51410084
Alignment:
Q  78 cacataattcagtgtaattacaagtatcggtgtcg 112  Q
    ||||||||||||||||||||||||| |||||||||    
T  51410050 cacataattcagtgtaattacaagtgtcggtgtcg 51410084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 111
Target Start/End: Original strand, 1815282 - 1815315
Alignment:
Q  78 cacataattcagtgtaattacaagtatcggtgtc 111  Q
    ||||||||||||||||||||||||| ||||||||    
T  1815282 cacataattcagtgtaattacaagtgtcggtgtc 1815315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 112
Target Start/End: Complemental strand, 19058889 - 19058856
Alignment:
Q  79 acataattcagtgtaattacaagtatcggtgtcg 112  Q
    |||||||||||||||||||||||| |||||||||    
T  19058889 acataattcagtgtaattacaagtgtcggtgtcg 19058856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 116
Target Start/End: Complemental strand, 30173795 - 30173758
Alignment:
Q  79 acataattcagtgtaattacaagtatcggtgtcgtgtc 116  Q
    |||||| ||||||||||||||||| |||||||||||||    
T  30173795 acataactcagtgtaattacaagtgtcggtgtcgtgtc 30173758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 111
Target Start/End: Complemental strand, 40258967 - 40258934
Alignment:
Q  78 cacataattcagtgtaattacaagtatcggtgtc 111  Q
    ||||||||||||||||||||||||| ||||||||    
T  40258967 cacataattcagtgtaattacaagtgtcggtgtc 40258934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000005; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 36 - 117
Target Start/End: Original strand, 24339629 - 24339706
Alignment:
Q  36 acattggcacaccgacacagctaataatttgaagnnnnnnnncacataattcagtgtaattacaagtatcggtgtcgtgtcg 117  Q
    |||||| ||| ||||||||||||||||||||||         ||||||||||||||||||||||||| ||||||||||||||    
T  24339629 acattgacacgccgacacagctaataatttgaa----aaaatcacataattcagtgtaattacaagtgtcggtgtcgtgtcg 24339706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 78 - 122
Target Start/End: Original strand, 2334275 - 2334319
Alignment:
Q  78 cacataattcagtgtaattacaagtatcggtgtcgtgtcgtgtcg 122  Q
    ||||||||| ||||||||||||||| |||||||||||||||||||    
T  2334275 cacataatttagtgtaattacaagtgtcggtgtcgtgtcgtgtcg 2334319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 78 - 117
Target Start/End: Original strand, 18039024 - 18039063
Alignment:
Q  78 cacataattcagtgtaattacaagtatcggtgtcgtgtcg 117  Q
    ||||||||||||||||||||||||| ||||||||||||||    
T  18039024 cacataattcagtgtaattacaagtgtcggtgtcgtgtcg 18039063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 79 - 116
Target Start/End: Original strand, 27945067 - 27945104
Alignment:
Q  79 acataattcagtgtaattacaagtatcggtgtcgtgtc 116  Q
    |||||||||||||||||||||||| |||||||||||||    
T  27945067 acataattcagtgtaattacaagtgtcggtgtcgtgtc 27945104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 81 - 117
Target Start/End: Complemental strand, 11272617 - 11272581
Alignment:
Q  81 ataattcagtgtaattacaagtatcggtgtcgtgtcg 117  Q
    |||||||||||||||||||||| ||||||||||||||    
T  11272617 ataattcagtgtaattacaagtgtcggtgtcgtgtcg 11272581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 117
Target Start/End: Complemental strand, 5409870 - 5409831
Alignment:
Q  78 cacataattcagtgtaattacaagtatcggtgtcgtgtcg 117  Q
    |||||||||||||| |||||||||| ||||||||||||||    
T  5409870 cacataattcagtgcaattacaagtgtcggtgtcgtgtcg 5409831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 117
Target Start/End: Original strand, 9778525 - 9778564
Alignment:
Q  78 cacataattcagtgtaattacaagtatcggtgtcgtgtcg 117  Q
    ||||||||||||| ||||||||||| ||||||||||||||    
T  9778525 cacataattcagtataattacaagtgtcggtgtcgtgtcg 9778564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 113
Target Start/End: Original strand, 21560528 - 21560563
Alignment:
Q  78 cacataattcagtgtaattacaagtatcggtgtcgt 113  Q
    ||||||||||||||||||||||||| ||||||||||    
T  21560528 cacataattcagtgtaattacaagtgtcggtgtcgt 21560563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 117
Target Start/End: Complemental strand, 26033495 - 26033456
Alignment:
Q  78 cacataattcagtgtaattacaagtatcggtgtcgtgtcg 117  Q
    ||||||||||||||||||||||||| ||||| ||||||||    
T  26033495 cacataattcagtgtaattacaagtgtcggtctcgtgtcg 26033456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 117
Target Start/End: Complemental strand, 32094054 - 32094015
Alignment:
Q  78 cacataattcagtgtaattacaagtatcggtgtcgtgtcg 117  Q
    ||||||||||||||||||||||| | ||||||||||||||    
T  32094054 cacataattcagtgtaattacaaatgtcggtgtcgtgtcg 32094015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 79 - 117
Target Start/End: Original strand, 13770717 - 13770755
Alignment:
Q  79 acataattcagtgtaattacaagtatcggtgtcgtgtcg 117  Q
    |||||||||||||||||||||||| ||| ||||||||||    
T  13770717 acataattcagtgtaattacaagtgtcgttgtcgtgtcg 13770755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 78 - 116
Target Start/End: Complemental strand, 27229345 - 27229307
Alignment:
Q  78 cacataattcagtgtaattacaagtatcggtgtcgtgtc 116  Q
    ||||||||| |||||||||| ||||||||||||||||||    
T  27229345 cacataatttagtgtaattataagtatcggtgtcgtgtc 27229307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 111
Target Start/End: Original strand, 1401050 - 1401083
Alignment:
Q  78 cacataattcagtgtaattacaagtatcggtgtc 111  Q
    |||||||||||||||||||| |||||||||||||    
T  1401050 cacataattcagtgtaattataagtatcggtgtc 1401083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 112
Target Start/End: Original strand, 21880178 - 21880211
Alignment:
Q  79 acataattcagtgtaattacaagtatcggtgtcg 112  Q
    |||||||||||||||||||||||| |||||||||    
T  21880178 acataattcagtgtaattacaagtgtcggtgtcg 21880211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.00000000002; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 78 - 166
Target Start/End: Original strand, 16766722 - 16766805
Alignment:
Q  78 cacataattcagtgtaattacaagtatcggtgtcgtgtcgtgtcgttgttggacacatgtcgtgtccgacatcgggacatgcctaatcc 166  Q
    ||||||||||||||||||||||||| |||||||     ||||||| ||| |||||||   ||||||||||| ||||||| |||||||||    
T  16766722 cacataattcagtgtaattacaagtgtcggtgt-----cgtgtcggtgtcggacacaacacgtgtccgacaccgggacacgcctaatcc 16766805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 78 - 116
Target Start/End: Complemental strand, 9911562 - 9911524
Alignment:
Q  78 cacataattcagtgtaattacaagtatcggtgtcgtgtc 116  Q
    ||||||||||||||||||||||||| |||||||||||||    
T  9911562 cacataattcagtgtaattacaagtgtcggtgtcgtgtc 9911524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 78 - 116
Target Start/End: Complemental strand, 10770708 - 10770670
Alignment:
Q  78 cacataattcagtgtaattacaagtatcggtgtcgtgtc 116  Q
    ||||||||||||||||||||||||| |||||||||||||    
T  10770708 cacataattcagtgtaattacaagtgtcggtgtcgtgtc 10770670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 117
Target Start/End: Complemental strand, 8365553 - 8365514
Alignment:
Q  78 cacataattcagtgtaattacaagtatcggtgtcgtgtcg 117  Q
    |||||||||| |||||||||||||| ||||||||||||||    
T  8365553 cacataattcggtgtaattacaagtgtcggtgtcgtgtcg 8365514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 117
Target Start/End: Complemental strand, 9107404 - 9107365
Alignment:
Q  78 cacataattcagtgtaattacaagtatcggtgtcgtgtcg 117  Q
    |||| |||||||||||||||||||| ||||||||||||||    
T  9107404 cacaaaattcagtgtaattacaagtgtcggtgtcgtgtcg 9107365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 117
Target Start/End: Original strand, 9522916 - 9522955
Alignment:
Q  78 cacataattcagtgtaattacaagtatcggtgtcgtgtcg 117  Q
    ||||||||||||||||||||||||| ||||||| ||||||    
T  9522916 cacataattcagtgtaattacaagtgtcggtgttgtgtcg 9522955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 81 - 115
Target Start/End: Original strand, 3398646 - 3398680
Alignment:
Q  81 ataattcagtgtaattacaagtatcggtgtcgtgt 115  Q
    ||||||||||||||||| |||||||||||||||||    
T  3398646 ataattcagtgtaattataagtatcggtgtcgtgt 3398680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 79 - 117
Target Start/End: Original strand, 12696350 - 12696388
Alignment:
Q  79 acataattcagtgtaattacaagtatcggtgtcgtgtcg 117  Q
    |||||||||||||||||||||||| || |||||||||||    
T  12696350 acataattcagtgtaattacaagtgtcagtgtcgtgtcg 12696388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 78 - 112
Target Start/End: Original strand, 28152123 - 28152157
Alignment:
Q  78 cacataattcagtgtaattacaagtatcggtgtcg 112  Q
    ||||||||||||||||||||||||| |||||||||    
T  28152123 cacataattcagtgtaattacaagtgtcggtgtcg 28152157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 78 - 120
Target Start/End: Original strand, 31384945 - 31384987
Alignment:
Q  78 cacataattcagtgtaattacaagtatcggtgtcgtgtcgtgt 120  Q
    ||||||||||||||||||||||||| || ||||||||| ||||    
T  31384945 cacataattcagtgtaattacaagtgtcagtgtcgtgtagtgt 31384987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 78 - 112
Target Start/End: Original strand, 34595159 - 34595193
Alignment:
Q  78 cacataattcagtgtaattacaagtatcggtgtcg 112  Q
    ||||||||||||||||||||||||| |||||||||    
T  34595159 cacataattcagtgtaattacaagtgtcggtgtcg 34595193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 112
Target Start/End: Complemental strand, 7977863 - 7977830
Alignment:
Q  79 acataattcagtgtaattacaagtatcggtgtcg 112  Q
    |||||||||||||||||||||||| |||||||||    
T  7977863 acataattcagtgtaattacaagtgtcggtgtcg 7977830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 116
Target Start/End: Complemental strand, 21395341 - 21395304
Alignment:
Q  79 acataattcagtgtaattacaagtatcggtgtcgtgtc 116  Q
    |||||||| ||||||||||||||| |||||||||||||    
T  21395341 acataatttagtgtaattacaagtgtcggtgtcgtgtc 21395304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 112
Target Start/End: Original strand, 28715321 - 28715354
Alignment:
Q  79 acataattcagtgtaattacaagtatcggtgtcg 112  Q
    |||||||||||||||||||||||| |||||||||    
T  28715321 acataattcagtgtaattacaagtgtcggtgtcg 28715354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000003; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 79 - 117
Target Start/End: Original strand, 21542056 - 21542094
Alignment:
Q  79 acataattcagtgtaattacaagtatcggtgtcgtgtcg 117  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  21542056 acataattcagtgtaattacaagtgtcggtgtcgtgtcg 21542094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 78 - 122
Target Start/End: Complemental strand, 13287433 - 13287389
Alignment:
Q  78 cacataattcagtgtaattacaagtatcggtgtcgtgtcgtgtcg 122  Q
    ||||||||||||||||| ||||||| ||||||||||||| |||||    
T  13287433 cacataattcagtgtaactacaagtgtcggtgtcgtgtcctgtcg 13287389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 117
Target Start/End: Complemental strand, 21351939 - 21351900
Alignment:
Q  78 cacataattcagtgtaattacaagtatcggtgtcgtgtcg 117  Q
    ||||||||||||||||||||||||| |||||||| |||||    
T  21351939 cacataattcagtgtaattacaagtgtcggtgtcatgtcg 21351900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 117
Target Start/End: Original strand, 39698566 - 39698605
Alignment:
Q  78 cacataattcagtgtaattacaagtatcggtgtcgtgtcg 117  Q
    ||||||||||||||||||||||||| || |||||||||||    
T  39698566 cacataattcagtgtaattacaagtgtcagtgtcgtgtcg 39698605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 78 - 112
Target Start/End: Original strand, 6247647 - 6247681
Alignment:
Q  78 cacataattcagtgtaattacaagtatcggtgtcg 112  Q
    ||||||||||||||||||||||||| |||||||||    
T  6247647 cacataattcagtgtaattacaagtgtcggtgtcg 6247681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 78 - 112
Target Start/End: Original strand, 15884013 - 15884047
Alignment:
Q  78 cacataattcagtgtaattacaagtatcggtgtcg 112  Q
    ||||||||||||||||||||||||| |||||||||    
T  15884013 cacataattcagtgtaattacaagtgtcggtgtcg 15884047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 78 - 112
Target Start/End: Complemental strand, 21191090 - 21191056
Alignment:
Q  78 cacataattcagtgtaattacaagtatcggtgtcg 112  Q
    ||||||||||||||||||||||||| |||||||||    
T  21191090 cacataattcagtgtaattacaagtgtcggtgtcg 21191056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 79 - 117
Target Start/End: Original strand, 21522776 - 21522814
Alignment:
Q  79 acataattcagtgtaattacaagtatcggtgtcgtgtcg 117  Q
    |||||||||||||||||||||| | ||||||||||||||    
T  21522776 acataattcagtgtaattacaattgtcggtgtcgtgtcg 21522814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 79 - 117
Target Start/End: Original strand, 21533342 - 21533380
Alignment:
Q  79 acataattcagtgtaattacaagtatcggtgtcgtgtcg 117  Q
    |||||||||||||||||||||| | ||||||||||||||    
T  21533342 acataattcagtgtaattacaattgtcggtgtcgtgtcg 21533380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000003; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 44 - 118
Target Start/End: Original strand, 19312326 - 19312400
Alignment:
Q  44 acaccgacacagctaataatttgaagnnnnnnnncacataattcagtgtaattacaagtatcggtgtcgtgtcgt 118  Q
    |||||||||||||||||||||| ||         ||||| |||||||||||||| ||||||||||||||||||||    
T  19312326 acaccgacacagctaataatttaaaaaaaaaaatcacatgattcagtgtaattataagtatcggtgtcgtgtcgt 19312400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 114
Target Start/End: Original strand, 30298973 - 30299008
Alignment:
Q  79 acataattcagtgtaattacaagtatcggtgtcgtg 114  Q
    |||||||||||||||||||||||| |||||||||||    
T  30298973 acataattcagtgtaattacaagtgtcggtgtcgtg 30299008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 114
Target Start/End: Original strand, 30327841 - 30327876
Alignment:
Q  79 acataattcagtgtaattacaagtatcggtgtcgtg 114  Q
    |||||||||||||||||||||||| |||||||||||    
T  30327841 acataattcagtgtaattacaagtgtcggtgtcgtg 30327876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 78 - 116
Target Start/End: Complemental strand, 11596386 - 11596348
Alignment:
Q  78 cacataattcagtgtaattacaagtatcggtgtcgtgtc 116  Q
    ||||||||||||||||||||||||| | |||||||||||    
T  11596386 cacataattcagtgtaattacaagtgtaggtgtcgtgtc 11596348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 78 - 112
Target Start/End: Complemental strand, 12797372 - 12797338
Alignment:
Q  78 cacataattcagtgtaattacaagtatcggtgtcg 112  Q
    ||||||||||||||||||||||||| |||||||||    
T  12797372 cacataattcagtgtaattacaagtgtcggtgtcg 12797338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 78 - 112
Target Start/End: Original strand, 42640554 - 42640588
Alignment:
Q  78 cacataattcagtgtaattacaagtatcggtgtcg 112  Q
    ||||||||||||||||||||||||| |||||||||    
T  42640554 cacataattcagtgtaattacaagtgtcggtgtcg 42640588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 117
Target Start/End: Complemental strand, 3947798 - 3947761
Alignment:
Q  80 cataattcagtgtaattacaagtatcggtgtcgtgtcg 117  Q
    ||||||||||||||||||||||| || |||||||||||    
T  3947798 cataattcagtgtaattacaagtgtcagtgtcgtgtcg 3947761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 112
Target Start/End: Original strand, 21945529 - 21945562
Alignment:
Q  79 acataattcagtgtaattacaagtatcggtgtcg 112  Q
    |||||||||||||||||||||||| |||||||||    
T  21945529 acataattcagtgtaattacaagtgtcggtgtcg 21945562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 78 - 115
Target Start/End: Original strand, 23795 - 23832
Alignment:
Q  78 cacataattcagtgtaattacaagtatcggtgtcgtgt 115  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  23795 cacataattcagtgtaattacaagtgtcggtgtcgtgt 23832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.000000001; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 78 - 115
Target Start/End: Original strand, 25566866 - 25566903
Alignment:
Q  78 cacataattcagtgtaattacaagtatcggtgtcgtgt 115  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  25566866 cacataattcagtgtaattacaagtgtcggtgtcgtgt 25566903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 133
Target Start/End: Complemental strand, 17468542 - 17468487
Alignment:
Q  78 cacataattcagtgtaattacaagtatcggtgtcgtgtcgtgtcgttgttggacac 133  Q
    |||||||| | |||||||||||||| | ||||||||||||||||| ||| ||||||    
T  17468542 cacataatgcggtgtaattacaagtgttggtgtcgtgtcgtgtcggtgtcggacac 17468487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 78 - 116
Target Start/End: Complemental strand, 2572090 - 2572052
Alignment:
Q  78 cacataattcagtgtaattacaagtatcggtgtcgtgtc 116  Q
    ||||||||| ||||||||||||||| |||||||||||||    
T  2572090 cacataatttagtgtaattacaagtgtcggtgtcgtgtc 2572052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 78 - 112
Target Start/End: Original strand, 4948677 - 4948711
Alignment:
Q  78 cacataattcagtgtaattacaagtatcggtgtcg 112  Q
    ||||||||||||||||||||||||| |||||||||    
T  4948677 cacataattcagtgtaattacaagtgtcggtgtcg 4948711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 112
Target Start/End: Original strand, 24669459 - 24669492
Alignment:
Q  79 acataattcagtgtaattacaagtatcggtgtcg 112  Q
    |||||||||||||||||||||||| |||||||||    
T  24669459 acataattcagtgtaattacaagtgtcggtgtcg 24669492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 111
Target Start/End: Original strand, 31557021 - 31557054
Alignment:
Q  78 cacataattcagtgtaattacaagtatcggtgtc 111  Q
    ||||||||||||||||||||||||| ||||||||    
T  31557021 cacataattcagtgtaattacaagtttcggtgtc 31557054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000005; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 78 - 114
Target Start/End: Original strand, 28918026 - 28918062
Alignment:
Q  78 cacataattcagtgtaattacaagtatcggtgtcgtg 114  Q
    ||||||||||||||||||||||||| |||||||||||    
T  28918026 cacataattcagtgtaattacaagtgtcggtgtcgtg 28918062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 117
Target Start/End: Original strand, 14209138 - 14209177
Alignment:
Q  78 cacataattcagtgtaattacaagtatcggtgtcgtgtcg 117  Q
    ||||||||||||||||||||||||| || |||||||||||    
T  14209138 cacataattcagtgtaattacaagtgtcagtgtcgtgtcg 14209177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 117
Target Start/End: Complemental strand, 49651820 - 49651781
Alignment:
Q  78 cacataattcagtgtaattacaagtatcggtgtcgtgtcg 117  Q
    ||||||||||| ||||||||||||| ||||||||||||||    
T  49651820 cacataattcactgtaattacaagtgtcggtgtcgtgtcg 49651781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 78 - 112
Target Start/End: Original strand, 25775534 - 25775568
Alignment:
Q  78 cacataattcagtgtaattacaagtatcggtgtcg 112  Q
    ||||||||||||||||||||||||| |||||||||    
T  25775534 cacataattcagtgtaattacaagtgtcggtgtcg 25775568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 78 - 116
Target Start/End: Original strand, 27505271 - 27505309
Alignment:
Q  78 cacataattcagtgtaattacaagtatcggtgtcgtgtc 116  Q
    ||||||||| ||||||||||||||| |||||||||||||    
T  27505271 cacataattaagtgtaattacaagtgtcggtgtcgtgtc 27505309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 78 - 116
Target Start/End: Complemental strand, 34185157 - 34185119
Alignment:
Q  78 cacataattcagtgtaattacaagtatcggtgtcgtgtc 116  Q
    |||| |||||||||||||||||||| |||||||||||||    
T  34185157 cacacaattcagtgtaattacaagtgtcggtgtcgtgtc 34185119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 117
Target Start/End: Original strand, 11155064 - 11155093
Alignment:
Q  88 agtgtaattacaagtatcggtgtcgtgtcg 117  Q
    ||||||||||||||||||||||||||||||    
T  11155064 agtgtaattacaagtatcggtgtcgtgtcg 11155093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 112
Target Start/End: Complemental strand, 26492234 - 26492205
Alignment:
Q  83 aattcagtgtaattacaagtatcggtgtcg 112  Q
    ||||||||||||||||||||||||||||||    
T  26492234 aattcagtgtaattacaagtatcggtgtcg 26492205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 115
Target Start/End: Original strand, 28812540 - 28812577
Alignment:
Q  78 cacataattcagtgtaattacaagtatcggtgtcgtgt 115  Q
    |||||||||||||||| |||||||| ||||||||||||    
T  28812540 cacataattcagtgtagttacaagtgtcggtgtcgtgt 28812577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000005; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 78 - 118
Target Start/End: Complemental strand, 30717564 - 30717524
Alignment:
Q  78 cacataattcagtgtaattacaagtatcggtgtcgtgtcgt 118  Q
    ||||||||||||||||||||||||| ||| |||||||||||    
T  30717564 cacataattcagtgtaattacaagtgtcgatgtcgtgtcgt 30717524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 78 - 118
Target Start/End: Original strand, 33153449 - 33153489
Alignment:
Q  78 cacataattcagtgtaattacaagtatcggtgtcgtgtcgt 118  Q
    ||||||||||||||||||||||||| || ||||||||||||    
T  33153449 cacataattcagtgtaattacaagtgtccgtgtcgtgtcgt 33153489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 117
Target Start/End: Complemental strand, 23058476 - 23058437
Alignment:
Q  78 cacataattcagtgtaattacaagtatcggtgtcgtgtcg 117  Q
    |||||||| |||||||||||||||| ||||||||||||||    
T  23058476 cacataatccagtgtaattacaagtgtcggtgtcgtgtcg 23058437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 78 - 112
Target Start/End: Complemental strand, 2438753 - 2438719
Alignment:
Q  78 cacataattcagtgtaattacaagtatcggtgtcg 112  Q
    ||||||||||||||||||||||||| |||||||||    
T  2438753 cacataattcagtgtaattacaagtgtcggtgtcg 2438719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 79 - 117
Target Start/End: Complemental strand, 12668456 - 12668418
Alignment:
Q  79 acataattcagtgtaattacaagtatcggtgtcgtgtcg 117  Q
    ||||||||||||||||||| |||| ||||||||||||||    
T  12668456 acataattcagtgtaattataagtgtcggtgtcgtgtcg 12668418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 78 - 112
Target Start/End: Original strand, 18421988 - 18422022
Alignment:
Q  78 cacataattcagtgtaattacaagtatcggtgtcg 112  Q
    ||||||||||||||||||||||||| |||||||||    
T  18421988 cacataattcagtgtaattacaagtgtcggtgtcg 18422022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 78 - 112
Target Start/End: Complemental strand, 19536431 - 19536397
Alignment:
Q  78 cacataattcagtgtaattacaagtatcggtgtcg 112  Q
    ||||||||||||||||||||||||| |||||||||    
T  19536431 cacataattcagtgtaattacaagtgtcggtgtcg 19536397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 115
Target Start/End: Original strand, 974772 - 974809
Alignment:
Q  78 cacataattcagtgtaattacaagtatcggtgtcgtgt 115  Q
    ||||| ||||||||||||||||||| ||||||||||||    
T  974772 cacattattcagtgtaattacaagtgtcggtgtcgtgt 974809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 115
Target Start/End: Original strand, 15657889 - 15657926
Alignment:
Q  78 cacataattcagtgtaattacaagtatcggtgtcgtgt 115  Q
    ||||||||||||||||||||||| | ||||||||||||    
T  15657889 cacataattcagtgtaattacaaatgtcggtgtcgtgt 15657926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0223 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 117
Target Start/End: Original strand, 20197 - 20236
Alignment:
Q  78 cacataattcagtgtaattacaagtatcggtgtcgtgtcg 117  Q
    ||||||||||||||||||||||||| || |||||||||||    
T  20197 cacataattcagtgtaattacaagtgtcagtgtcgtgtcg 20236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 117
Target Start/End: Original strand, 23445 - 23484
Alignment:
Q  78 cacataattcagtgtaattacaagtatcggtgtcgtgtcg 117  Q
    |||||||||||||||||||| |||| ||||||||||||||    
T  23445 cacataattcagtgtaattataagtgtcggtgtcgtgtcg 23484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 117
Target Start/End: Original strand, 2953 - 2992
Alignment:
Q  78 cacataattcagtgtaattacaagtatcggtgtcgtgtcg 117  Q
    ||||||||| |||||||||||||||||| |||||||||||    
T  2953 cacataatttagtgtaattacaagtatcagtgtcgtgtcg 2992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0136 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 115
Target Start/End: Complemental strand, 3883 - 3846
Alignment:
Q  78 cacataattcagtgtaattacaagtatcggtgtcgtgt 115  Q
    ||||||||||||||||||||||||| || |||||||||    
T  3883 cacataattcagtgtaattacaagtgtcagtgtcgtgt 3846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 112
Target Start/End: Complemental strand, 45563 - 45530
Alignment:
Q  79 acataattcagtgtaattacaagtatcggtgtcg 112  Q
    |||||||||||||||||||||||| |||||||||    
T  45563 acataattcagtgtaattacaagtgtcggtgtcg 45530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 111
Target Start/End: Original strand, 123653 - 123686
Alignment:
Q  78 cacataattcagtgtaattacaagtatcggtgtc 111  Q
    ||||||||||||||||||||||||| ||||||||    
T  123653 cacataattcagtgtaattacaagtgtcggtgtc 123686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University