View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6926_low_11 (Length: 341)
Name: NF6926_low_11
Description: NF6926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6926_low_11 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 341
Target Start/End: Complemental strand, 15369035 - 15368693
Alignment:
| Q |
1 |
atgtggaagaagaagaaatagttgggtatgatgcaatgaaagaatggttggagaagaagccgaaggggtttggagaagggaaagtgtatgatacttcagt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15369035 |
atgtggaagaagaagaaatagttgggtatgatgaaatgaaagaatggtgggagaagaagccgaaggggtttggagaagggaaagtgtatgatacttcagt |
15368936 |
T |
|
| Q |
101 |
tgaagataagttgtttgaagaaatgcagaagagtaaacaagctcaagctcttaatttgaaaaagcttaaaaccaatcctatcaaaaataatgtcacaaag |
200 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15368935 |
tgaagataagctgtttgaagaaatgcagaagagtaaacaagctcaagctcttaatttgaaaaagcttaaaaccaatcctatcaaaaataatgtcacaaag |
15368836 |
T |
|
| Q |
201 |
aagataggtaactcatcaaaattcagnnnnnnnnnnnnnnnnnnnncaaattatgttattgcaccctgttaaataggtatttgtttg--gaaattgttct |
298 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| ||||||||||| |
|
|
| T |
15368835 |
aagataggtaactcatcaaaattcagtttttttatattttatttttcaaattatgttattgcgccctgttaaataggtatttgtttggtgaaattgttct |
15368736 |
T |
|
| Q |
299 |
gttattgatgatggggttttgtttatgttctgttcttgttgct |
341 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
15368735 |
gttattaatgatggggttttgtttatgttctgttcttgttgct |
15368693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 139; Significance: 1e-72; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 9 - 187
Target Start/End: Complemental strand, 49398576 - 49398398
Alignment:
| Q |
9 |
gaagaagaaatagttgggtatgatgcaatgaaagaatggttggagaagaagccgaaggggtttggagaagggaaagtgtatgatacttcagttgaagata |
108 |
Q |
| |
|
|||||||| |||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49398576 |
gaagaagagatagttgggtttgatgaaatgaaagaatggttggagaagaagccgaaggggtttggagaagggaaagtgtatgatacttcagttgaagata |
49398477 |
T |
|
| Q |
109 |
agttgtttgaagaaatgcagaagagtaaacaagctcaagctcttaatttgaaaaagcttaaaaccaatcctatcaaaaa |
187 |
Q |
| |
|
|| ||||||||||||||||||| | |||||||| |||||||||||||||||| ||||||||||||||| | |||||||| |
|
|
| T |
49398476 |
agctgtttgaagaaatgcagaaaaataaacaagttcaagctcttaatttgaagaagcttaaaaccaattccatcaaaaa |
49398398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University